Wall clock time and date at job start Tue Mar 31 2020 15:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48498 * 109.46846 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47219 * 300.00584 * 3 2 1 6 6 H 1.48509 * 109.46801 * 60.00463 * 3 2 1 7 7 C 1.38804 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00140 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46872 * 179.97438 * 10 9 7 12 12 H 1.08992 * 110.67025 * 56.78317 * 11 10 9 13 13 C 1.54885 * 110.75482 * 293.54324 * 11 10 9 14 14 C 1.54270 * 104.19829 * 203.56092 * 13 11 10 15 15 C 1.53875 * 106.59595 * 23.61108 * 14 13 11 16 16 H 1.08996 * 110.03232 * 119.33758 * 15 14 13 17 17 N 1.46506 * 110.03438 * 240.71881 * 15 14 13 18 18 C 1.34777 * 119.99873 * 272.91110 * 17 15 14 19 19 O 1.21704 * 120.00041 * 359.97438 * 18 17 15 20 20 C 1.46566 * 119.99905 * 179.97438 * 18 17 15 21 21 C 1.36678 * 125.44940 * 179.97438 * 20 18 17 22 22 C 1.37537 * 113.28627 * 179.97438 * 21 20 18 23 23 Cl 1.73593 * 122.46011 * 180.02562 * 22 21 20 24 24 C 1.33878 * 115.07781 * 0.02562 * 22 21 20 25 25 S 1.70617 * 110.96057 * 359.71723 * 24 22 21 26 26 C 1.54265 * 106.64087 * 0.02562 * 15 14 13 27 27 H 0.96995 * 120.00468 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99605 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47534 * 60.00109 * 10 9 7 30 30 H 1.09003 * 109.47400 * 299.99846 * 10 9 7 31 31 H 1.09001 * 110.48924 * 84.88550 * 13 11 10 32 32 H 1.09004 * 110.60270 * 322.29119 * 13 11 10 33 33 H 1.09004 * 110.03289 * 264.32908 * 14 13 11 34 34 H 1.08989 * 110.07729 * 142.91648 * 14 13 11 35 35 H 0.96995 * 120.00050 * 92.63225 * 17 15 14 36 36 H 1.07996 * 123.36051 * 359.97438 * 21 20 18 37 37 H 1.07999 * 124.51776 * 179.97438 * 24 22 21 38 38 H 1.09004 * 110.48387 * 95.04238 * 26 15 14 39 39 H 1.09006 * 110.49011 * 217.68575 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3889 -4.7493 -0.8528 13 6 0.2680 -4.8606 1.3282 14 6 -0.1955 -6.3273 1.4465 15 6 0.7814 -7.1662 0.6041 16 1 1.2900 -7.8939 1.2365 17 7 0.0572 -7.8533 -0.4682 18 6 -0.5032 -9.0573 -0.2390 19 8 -0.4073 -9.5741 0.8587 20 6 -1.2282 -9.7444 -1.3116 21 6 -1.8365 -10.9635 -1.2027 22 6 -2.4458 -11.3729 -2.3658 23 17 -3.2895 -12.8846 -2.4934 24 6 -2.3403 -10.5200 -3.3923 25 16 -1.4609 -9.1290 -2.9421 26 6 1.8052 -6.1811 0.0033 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7145 0.8895 30 1 2.6848 -3.7145 -0.8905 31 1 -0.5913 -4.1919 1.2788 32 1 0.9096 -4.5945 2.1682 33 1 -1.2084 -6.4313 1.0575 34 1 -0.1609 -6.6478 2.4876 35 1 -0.0224 -7.4398 -1.3420 36 1 -1.8387 -11.5471 -0.2940 37 1 -2.7597 -10.6881 -4.3733 38 1 2.6967 -6.1289 0.6285 39 1 2.0675 -6.4758 -1.0128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755743274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:28 Heat of formation + Delta-G solvation = -11.513670 kcal Electronic energy + Delta-G solvation = -22274.604490 eV Core-core repulsion = 18755.331853 eV Total energy + Delta-G solvation = -3519.272636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27460 -38.69819 -37.83449 -36.38287 -34.85910 -33.43435 -31.25552 -30.27271 -28.82249 -27.85181 -25.49366 -24.36347 -22.24325 -22.08840 -20.30582 -19.72284 -19.66651 -19.04766 -17.08224 -16.78773 -16.40367 -15.85929 -15.42015 -14.94218 -14.62635 -14.30882 -14.06552 -13.85648 -13.66079 -13.41344 -13.25292 -12.99807 -12.83536 -12.22167 -11.97994 -11.79208 -11.77039 -11.32504 -11.20610 -11.11792 -10.89029 -10.80226 -10.55485 -10.32940 -10.29787 -10.24113 -9.94539 -9.67658 -9.49556 -9.22392 -8.95050 -8.87416 -6.91153 -5.76896 -3.05034 -0.06379 0.74724 1.08277 1.69546 2.05017 2.84974 2.89849 3.42711 3.48438 3.50631 4.29547 4.51023 4.56313 4.68091 4.70864 4.74304 5.01362 5.13268 5.39867 5.45815 5.51810 5.56720 5.58342 5.64660 5.69606 5.81891 5.85620 6.03900 6.09332 6.22937 6.29834 6.41912 6.57014 6.59701 6.78414 6.91862 7.20316 7.70325 7.88566 8.42456 9.53630 10.12471 10.46920 11.46144 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.002090 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.950888 B =13394.695769 C =13967.274404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.098 4.098 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.142 3.858 16 H 0.092 0.908 17 N -0.714 5.714 18 C 0.590 3.410 19 O -0.525 6.525 20 C -0.256 4.256 21 C -0.053 4.053 22 C -0.060 4.060 23 Cl -0.046 7.046 24 C -0.233 4.233 25 S 0.258 5.742 26 C -0.124 4.124 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.084 0.916 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -24.849 -6.715 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.117 4.117 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.038 3.962 16 H 0.110 0.890 17 N -0.365 5.365 18 C 0.375 3.625 19 O -0.403 6.403 20 C -0.377 4.377 21 C -0.086 4.086 22 C -0.101 4.101 23 Cl -0.018 7.018 24 C -0.371 4.371 25 S 0.525 5.475 26 C -0.163 4.163 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.103 0.897 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.825 -23.892 -6.692 25.105 hybrid contribution -0.614 -0.373 0.113 0.727 sum -4.440 -24.265 -6.579 25.530 Atomic orbital electron populations 1.69665 1.05089 1.25491 1.58025 1.24738 0.95533 0.97689 1.03187 0.86125 0.78780 0.84174 0.77168 1.20582 1.21914 1.21898 1.19282 0.91055 0.84230 1.42294 0.91189 1.42349 1.05878 0.99949 1.89410 1.20636 0.93052 0.85303 0.97707 1.22349 0.97477 0.93846 0.98020 0.90773 1.22344 1.00364 0.94533 0.97736 1.22620 0.98917 0.95751 0.99960 1.21753 0.92348 0.94036 0.88041 0.89006 1.46090 1.55504 1.19117 1.15832 1.16822 0.78426 0.80897 0.86311 1.90849 1.59623 1.66207 1.23604 1.24632 1.11841 1.01604 0.99619 1.20513 0.94910 0.94548 0.98649 1.19552 1.04004 0.91758 0.94777 1.98380 1.75977 1.29229 1.98194 1.25295 1.07599 0.99747 1.04504 1.83294 1.46145 1.15991 1.02091 1.22712 0.97864 0.94429 1.01248 0.93604 0.78273 0.96256 0.96500 0.91049 0.91191 0.91583 0.91272 0.76768 0.81883 0.80207 0.89709 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.09 5.45 -59.91 -0.33 -18.42 16 10 C 0.16 3.08 5.71 -4.04 -0.02 3.05 16 11 C -0.10 -1.45 2.96 -88.56 -0.26 -1.71 16 12 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.66 5.96 -25.07 -0.15 -1.80 16 14 C -0.13 -1.70 6.59 -25.61 -0.17 -1.86 16 15 C 0.14 1.63 3.23 -66.81 -0.22 1.42 16 16 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 17 N -0.71 -7.49 4.93 -54.06 -0.27 -7.76 16 18 C 0.59 7.02 7.77 -12.90 -0.10 6.92 16 19 O -0.53 -7.99 16.51 5.19 0.09 -7.90 16 20 C -0.26 -2.47 6.45 -36.79 -0.24 -2.71 16 21 C -0.05 -0.50 9.89 -40.40 -0.40 -0.90 16 22 C -0.06 -0.50 6.25 -41.37 -0.26 -0.76 16 23 Cl -0.05 -0.36 29.10 -51.86 -1.51 -1.87 16 24 C -0.23 -1.57 10.78 29.20 0.31 -1.25 16 25 S 0.26 1.74 22.15 -107.50 -2.38 -0.64 16 26 C -0.12 -1.42 5.89 -25.00 -0.15 -1.57 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.38 9.95 7.53 -40.82 -0.31 9.64 16 29 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.08 8.02 -51.93 -0.42 0.67 16 33 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 34 H 0.07 0.86 8.14 -51.94 -0.42 0.44 16 35 H 0.40 3.44 7.68 -40.82 -0.31 3.12 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 39 H 0.07 0.72 7.99 -51.93 -0.41 0.30 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -32.03 356.75 -10.39 -42.43 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.18 Total: 7.27 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.89 Total: -8.45 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.13 Total: -53.48 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.38 Total: -0.64 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.03 -10.39 -42.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.913 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds