Wall clock time and date at job start Tue Mar 31 2020 15:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48498 * 109.46846 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47219 * 300.00584 * 3 2 1 6 6 H 1.48509 * 109.46801 * 60.00463 * 3 2 1 7 7 C 1.38804 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00140 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46872 * 179.97438 * 10 9 7 12 12 H 1.08992 * 110.67025 * 56.78317 * 11 10 9 13 13 C 1.54885 * 110.75482 * 293.54324 * 11 10 9 14 14 C 1.54270 * 104.19829 * 203.56092 * 13 11 10 15 15 C 1.53875 * 106.59595 * 23.61108 * 14 13 11 16 16 H 1.08996 * 110.03232 * 119.33758 * 15 14 13 17 17 N 1.46506 * 110.03438 * 240.71881 * 15 14 13 18 18 C 1.34777 * 119.99873 * 272.91110 * 17 15 14 19 19 O 1.21704 * 120.00041 * 359.97438 * 18 17 15 20 20 C 1.46566 * 119.99905 * 179.97438 * 18 17 15 21 21 C 1.36678 * 125.44940 * 179.97438 * 20 18 17 22 22 C 1.37537 * 113.28627 * 179.97438 * 21 20 18 23 23 Cl 1.73593 * 122.46011 * 180.02562 * 22 21 20 24 24 C 1.33878 * 115.07781 * 0.02562 * 22 21 20 25 25 S 1.70617 * 110.96057 * 359.71723 * 24 22 21 26 26 C 1.54265 * 106.64087 * 0.02562 * 15 14 13 27 27 H 0.96995 * 120.00468 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99605 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47534 * 60.00109 * 10 9 7 30 30 H 1.09003 * 109.47400 * 299.99846 * 10 9 7 31 31 H 1.09001 * 110.48924 * 84.88550 * 13 11 10 32 32 H 1.09004 * 110.60270 * 322.29119 * 13 11 10 33 33 H 1.09004 * 110.03289 * 264.32908 * 14 13 11 34 34 H 1.08989 * 110.07729 * 142.91648 * 14 13 11 35 35 H 0.96995 * 120.00050 * 92.63225 * 17 15 14 36 36 H 1.07996 * 123.36051 * 359.97438 * 21 20 18 37 37 H 1.07999 * 124.51776 * 179.97438 * 24 22 21 38 38 H 1.09004 * 110.48387 * 95.04238 * 26 15 14 39 39 H 1.09006 * 110.49011 * 217.68575 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3889 -4.7493 -0.8528 13 6 0.2680 -4.8606 1.3282 14 6 -0.1955 -6.3273 1.4465 15 6 0.7814 -7.1662 0.6041 16 1 1.2900 -7.8939 1.2365 17 7 0.0572 -7.8533 -0.4682 18 6 -0.5032 -9.0573 -0.2390 19 8 -0.4073 -9.5741 0.8587 20 6 -1.2282 -9.7444 -1.3116 21 6 -1.8365 -10.9635 -1.2027 22 6 -2.4458 -11.3729 -2.3658 23 17 -3.2895 -12.8846 -2.4934 24 6 -2.3403 -10.5200 -3.3923 25 16 -1.4609 -9.1290 -2.9421 26 6 1.8052 -6.1811 0.0033 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7145 0.8895 30 1 2.6848 -3.7145 -0.8905 31 1 -0.5913 -4.1919 1.2788 32 1 0.9096 -4.5945 2.1682 33 1 -1.2084 -6.4313 1.0575 34 1 -0.1609 -6.6478 2.4876 35 1 -0.0224 -7.4398 -1.3420 36 1 -1.8387 -11.5471 -0.2940 37 1 -2.7597 -10.6881 -4.3733 38 1 2.6967 -6.1289 0.6285 39 1 2.0675 -6.4758 -1.0128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755743274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:27 Heat of formation + Delta-G solvation = -31.271499 kcal Electronic energy + Delta-G solvation = -22275.461253 eV Core-core repulsion = 18755.331853 eV Total energy + Delta-G solvation = -3520.129400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20632 -39.53972 -38.76519 -37.02037 -36.44335 -34.78331 -32.98972 -31.10465 -30.13269 -28.99612 -26.52724 -25.79591 -23.95333 -22.90304 -21.27241 -20.97540 -20.44614 -19.78948 -19.08688 -17.54953 -17.26074 -16.70854 -16.66923 -16.32784 -15.79996 -15.72569 -15.06782 -15.05588 -14.66365 -14.52367 -14.38750 -14.25283 -13.88963 -13.52674 -13.09445 -12.93870 -12.81818 -12.45730 -12.41338 -12.27529 -12.11480 -12.05168 -11.92358 -11.86497 -11.61189 -11.50241 -11.44314 -11.24891 -10.90381 -10.30832 -10.00382 -9.52386 -8.95020 -7.93052 -5.20661 -0.71971 0.17563 0.45022 1.02200 1.45036 1.48691 1.49068 1.59164 1.99652 2.05499 2.57742 3.40722 3.52155 3.58295 3.68446 3.90333 3.92869 4.09944 4.19176 4.43499 4.48276 4.53238 4.55480 4.61813 4.72926 4.77560 4.81684 4.88821 4.90048 5.06337 5.08930 5.17977 5.24239 5.37889 5.50637 5.53978 5.58040 6.30152 6.36071 7.02059 7.36450 8.14791 8.36929 9.30770 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.002090 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.950888 B =13394.695769 C =13967.274404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.090 4.090 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.090 0.910 17 N -0.706 5.706 18 C 0.591 3.409 19 O -0.566 6.566 20 C -0.287 4.287 21 C -0.056 4.056 22 C -0.078 4.078 23 Cl -0.047 7.047 24 C -0.221 4.221 25 S 0.314 5.686 26 C -0.110 4.110 27 H 0.250 0.750 28 H 0.374 0.626 29 H 0.020 0.980 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.154 0.846 37 H 0.206 0.794 38 H 0.093 0.907 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -25.500 -8.340 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.109 4.109 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.109 0.891 17 N -0.357 5.357 18 C 0.378 3.622 19 O -0.447 6.447 20 C -0.407 4.407 21 C -0.090 4.090 22 C -0.118 4.118 23 Cl -0.019 7.019 24 C -0.360 4.360 25 S 0.581 5.419 26 C -0.148 4.148 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.172 0.828 37 H 0.223 0.777 38 H 0.111 0.889 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.998 -24.561 -8.345 26.113 hybrid contribution -0.861 -0.212 0.572 1.055 sum -3.860 -24.773 -7.773 26.249 Atomic orbital electron populations 1.69815 1.06549 1.25888 1.59841 1.25545 0.96404 1.01046 1.04034 0.85098 0.78276 0.79967 0.76582 1.19040 1.22051 1.22268 1.19685 0.91511 0.85485 1.40610 0.90689 1.42574 1.05680 1.01183 1.89253 1.20822 0.93777 0.84595 0.97636 1.22229 0.96829 0.94001 0.97854 0.90705 1.22254 0.99360 0.95506 0.97576 1.22525 0.99059 0.94362 1.00471 1.21598 0.92003 0.93782 0.88201 0.89149 1.45985 1.54969 1.18728 1.16055 1.17090 0.77983 0.80874 0.86277 1.90822 1.61253 1.67217 1.25412 1.24465 1.13041 1.02173 1.01053 1.20548 0.94984 0.94567 0.98928 1.19524 1.05000 0.92355 0.94888 1.98377 1.76005 1.29321 1.98168 1.25688 1.06095 0.99082 1.05123 1.83094 1.44750 1.14891 0.99153 1.22630 0.97524 0.91844 1.02845 0.94101 0.79404 0.96240 0.95906 0.93323 0.92156 0.91844 0.91151 0.75507 0.82838 0.77663 0.88892 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.81 5.45 -343.45 -1.87 -38.68 16 10 C 0.16 5.89 5.71 86.38 0.49 6.39 16 11 C -0.09 -2.55 2.96 -9.46 -0.03 -2.58 16 12 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.11 -3.22 5.96 31.67 0.19 -3.03 16 14 C -0.13 -3.11 6.59 31.32 0.21 -2.90 16 15 C 0.15 3.19 3.23 45.71 0.15 3.34 16 16 H 0.09 2.07 7.58 -2.39 -0.02 2.05 16 17 N -0.71 -13.67 4.93 -443.16 -2.19 -15.86 16 18 C 0.59 13.62 7.77 86.41 0.67 14.29 16 19 O -0.57 -17.32 16.51 -4.36 -0.07 -17.39 16 20 C -0.29 -5.22 6.45 24.08 0.16 -5.06 16 21 C -0.06 -1.03 9.89 21.74 0.22 -0.81 16 22 C -0.08 -1.17 6.25 21.11 0.13 -1.04 16 23 Cl -0.05 -0.69 29.10 -2.72 -0.08 -0.77 16 24 C -0.22 -2.38 10.78 66.83 0.72 -1.66 16 25 S 0.31 3.42 22.15 -56.49 -1.25 2.17 16 26 C -0.11 -2.26 5.89 31.71 0.19 -2.07 16 27 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.37 19.71 7.53 -92.71 -0.70 19.01 16 29 H 0.02 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.88 8.02 -2.38 -0.02 1.86 16 33 H 0.06 1.61 7.92 -2.38 -0.02 1.59 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.41 6.08 7.68 -92.71 -0.71 5.37 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.09 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.09 1.55 7.99 -2.38 -0.02 1.54 16 Total: -1.00 -69.15 356.75 0.93 -68.23 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.32 Total: 24.74 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.40 Total: -11.60 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -3.77 Total: -113.24 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.07 Total: -17.39 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.25 Total: 2.17 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -69.15 0.93 -68.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.957 kcal (2) G-P(sol) polarization free energy of solvation -69.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds