Wall clock time and date at job start Tue Mar 31 2020 15:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47065 * 300.00551 * 3 2 1 6 6 H 1.48504 * 109.47249 * 60.00319 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01554 * 306.39088 * 11 10 9 13 13 C 1.54266 * 110.07584 * 67.80610 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.92024 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 17 17 N 1.46506 * 110.48485 * 156.62546 * 15 14 13 18 18 C 1.34778 * 120.00144 * 90.22399 * 17 15 14 19 19 O 1.21702 * 119.99593 * 359.97438 * 18 17 15 20 20 C 1.46571 * 119.99878 * 180.02562 * 18 17 15 21 21 C 1.36670 * 125.45293 * 179.97438 * 20 18 17 22 22 C 1.37528 * 113.28810 * 179.97438 * 21 20 18 23 23 Cl 1.73601 * 122.45648 * 180.02562 * 22 21 20 24 24 C 1.33866 * 115.07883 * 359.97438 * 22 21 20 25 25 S 1.70611 * 110.96334 * 359.72560 * 24 22 21 26 26 C 1.53872 * 110.03213 * 185.00094 * 11 10 9 27 27 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00059 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47298 * 59.99994 * 10 9 7 30 30 H 1.09007 * 109.47072 * 299.99613 * 10 9 7 31 31 H 1.09002 * 110.48438 * 261.59643 * 13 11 10 32 32 H 1.08998 * 110.48431 * 24.10471 * 13 11 10 33 33 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 34 34 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 35 35 H 0.97000 * 119.99605 * 270.22132 * 17 15 14 36 36 H 1.08005 * 123.35586 * 359.97263 * 21 20 18 37 37 H 1.08005 * 124.51730 * 180.02562 * 24 22 21 38 38 H 1.09003 * 110.03622 * 121.37719 * 26 11 10 39 39 H 1.09003 * 110.07498 * 359.96565 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3593 -4.7086 0.8230 13 6 0.3044 -4.8662 -1.3431 14 6 0.1414 -6.3787 -1.6350 15 6 1.4872 -6.9682 -1.1449 16 1 2.2621 -6.8283 -1.8986 17 7 1.3367 -8.3889 -0.8203 18 6 1.5491 -9.3230 -1.7684 19 8 1.8655 -8.9862 -2.8943 20 6 1.3979 -10.7443 -1.4437 21 6 1.5846 -11.7807 -2.3149 22 6 1.3766 -13.0147 -1.7445 23 17 1.5495 -14.4942 -2.6360 24 6 1.0321 -12.9911 -0.4512 25 16 0.9566 -11.3893 0.1313 26 6 1.8160 -6.1562 0.1248 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6848 -3.7145 0.8894 30 1 2.6848 -3.7145 -0.8906 31 1 -0.6709 -4.3892 -1.2461 32 1 0.8872 -4.3846 -2.1282 33 1 0.0089 -6.5538 -2.7027 34 1 -0.6917 -6.7940 -1.0679 35 1 1.0842 -8.6573 0.0770 36 1 1.8672 -11.6442 -3.3484 37 1 0.8336 -13.8693 0.1454 38 1 1.4765 -6.6937 1.0102 39 1 2.8895 -5.9771 0.1859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755743276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:31 Heat of formation + Delta-G solvation = -11.656452 kcal Electronic energy + Delta-G solvation = -22113.338435 eV Core-core repulsion = 18594.059607 eV Total energy + Delta-G solvation = -3519.278828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.25492 -38.72611 -37.90069 -36.43270 -34.89872 -33.52013 -31.22131 -30.32423 -28.81424 -27.79823 -25.51441 -24.30303 -22.17627 -22.06216 -20.65028 -19.91869 -19.48603 -18.98850 -17.00838 -16.87319 -16.48237 -15.94205 -15.36447 -14.97319 -14.57626 -14.28031 -14.10233 -13.73984 -13.69419 -13.37856 -13.28422 -13.21068 -12.78218 -12.20334 -11.94271 -11.85951 -11.73678 -11.48249 -11.35701 -11.07847 -10.86605 -10.73181 -10.65491 -10.35904 -10.31251 -10.14871 -9.90043 -9.66833 -9.53478 -9.21487 -9.00351 -8.85227 -6.89100 -5.74872 -3.02910 -0.11853 0.68513 1.01780 1.64949 1.99824 2.82570 2.84395 3.44432 3.50182 3.52340 4.24077 4.47243 4.59116 4.63847 4.69076 4.78596 5.01380 5.08491 5.34850 5.47883 5.52677 5.54636 5.54878 5.60072 5.64956 5.84409 5.88010 6.06502 6.12713 6.26590 6.28036 6.42000 6.54224 6.64281 6.81494 6.94230 7.16665 7.72414 7.85856 8.44451 9.55664 10.14524 10.49146 11.48187 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.044646 B = 0.001849 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.000624 B =15140.975860 C =15326.700425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.139 3.861 16 H 0.100 0.900 17 N -0.715 5.715 18 C 0.589 3.411 19 O -0.521 6.521 20 C -0.254 4.254 21 C -0.053 4.053 22 C -0.059 4.059 23 Cl -0.045 7.045 24 C -0.232 4.232 25 S 0.251 5.749 26 C -0.121 4.121 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.066 0.934 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 -30.583 0.705 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.173 4.173 15 C 0.036 3.964 16 H 0.118 0.882 17 N -0.366 5.366 18 C 0.374 3.626 19 O -0.398 6.398 20 C -0.374 4.374 21 C -0.086 4.086 22 C -0.100 4.100 23 Cl -0.017 7.017 24 C -0.371 4.371 25 S 0.518 5.482 26 C -0.160 4.160 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.182 0.818 37 H 0.198 0.802 38 H 0.085 0.915 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.533 -29.689 1.239 29.719 hybrid contribution 0.312 -0.195 -0.934 1.004 sum 0.845 -29.883 0.304 29.897 Atomic orbital electron populations 1.69669 1.05087 1.25468 1.58055 1.24737 0.95533 0.97681 1.03198 0.86123 0.78786 0.84173 0.77154 1.20584 1.21899 1.21923 1.19288 0.91067 0.84244 1.42260 0.91186 1.42360 1.05883 0.99967 1.89401 1.20798 0.93040 0.85365 0.97679 1.21884 0.97722 0.93672 0.98213 0.90686 1.22321 1.01125 0.94053 0.97367 1.22907 0.96405 0.96645 1.01293 1.22058 0.98866 0.77280 0.98239 0.88222 1.46010 1.70475 1.06991 1.13117 1.16831 0.77395 0.83160 0.85182 1.90869 1.47102 1.81285 1.20591 1.24633 1.15925 0.97921 0.98966 1.20538 0.97670 0.88615 1.01770 1.19558 1.08819 0.89015 0.92585 1.98384 1.96386 1.32049 1.74848 1.25265 1.08556 1.04501 0.98781 1.83158 1.62000 0.94427 1.08635 1.22419 1.01628 0.95898 0.96060 0.93619 0.78260 0.96529 0.96216 0.91121 0.90757 0.91300 0.91471 0.76983 0.81798 0.80219 0.91533 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.39 5.45 -59.91 -0.33 -18.72 16 10 C 0.16 3.12 5.32 -4.04 -0.02 3.10 16 11 C -0.10 -1.45 2.96 -89.50 -0.26 -1.72 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.66 6.09 -25.07 -0.15 -1.82 16 14 C -0.13 -1.68 6.58 -24.74 -0.16 -1.84 16 15 C 0.14 1.64 3.22 -66.27 -0.21 1.43 16 16 H 0.10 1.35 7.56 -51.93 -0.39 0.96 16 17 N -0.72 -7.11 5.15 -53.53 -0.28 -7.38 16 18 C 0.59 6.84 7.78 -12.90 -0.10 6.74 16 19 O -0.52 -8.02 16.49 5.19 0.09 -7.93 16 20 C -0.25 -2.30 6.45 -36.79 -0.24 -2.54 16 21 C -0.05 -0.48 9.89 -40.41 -0.40 -0.87 16 22 C -0.06 -0.46 6.25 -41.38 -0.26 -0.71 16 23 Cl -0.05 -0.34 29.10 -51.86 -1.51 -1.85 16 24 C -0.23 -1.38 10.77 29.20 0.31 -1.06 16 25 S 0.25 1.43 22.15 -107.50 -2.38 -0.95 16 26 C -0.12 -1.42 6.19 -25.61 -0.16 -1.58 16 27 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.09 7.55 -40.82 -0.31 9.78 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.40 8.01 -51.92 -0.42 -0.02 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.24 7.76 -51.93 -0.40 0.84 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 2.89 7.48 -40.82 -0.31 2.59 16 36 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 39 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -32.55 355.98 -10.37 -42.93 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.13 Total: 6.83 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.90 Total: -8.25 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.12 Total: -53.66 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.38 Total: -0.95 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.55 -10.37 -42.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.270 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds