Wall clock time and date at job start Tue Mar 31 2020 15:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47065 * 300.00551 * 3 2 1 6 6 H 1.48504 * 109.47249 * 60.00319 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01554 * 306.39088 * 11 10 9 13 13 C 1.54266 * 110.07584 * 67.80610 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.92024 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 17 17 N 1.46506 * 110.48485 * 156.62546 * 15 14 13 18 18 C 1.34778 * 120.00144 * 90.22399 * 17 15 14 19 19 O 1.21702 * 119.99593 * 359.97438 * 18 17 15 20 20 C 1.46571 * 119.99878 * 180.02562 * 18 17 15 21 21 C 1.36670 * 125.45293 * 179.97438 * 20 18 17 22 22 C 1.37528 * 113.28810 * 179.97438 * 21 20 18 23 23 Cl 1.73601 * 122.45648 * 180.02562 * 22 21 20 24 24 C 1.33866 * 115.07883 * 359.97438 * 22 21 20 25 25 S 1.70611 * 110.96334 * 359.72560 * 24 22 21 26 26 C 1.53872 * 110.03213 * 185.00094 * 11 10 9 27 27 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00059 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47298 * 59.99994 * 10 9 7 30 30 H 1.09007 * 109.47072 * 299.99613 * 10 9 7 31 31 H 1.09002 * 110.48438 * 261.59643 * 13 11 10 32 32 H 1.08998 * 110.48431 * 24.10471 * 13 11 10 33 33 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 34 34 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 35 35 H 0.97000 * 119.99605 * 270.22132 * 17 15 14 36 36 H 1.08005 * 123.35586 * 359.97263 * 21 20 18 37 37 H 1.08005 * 124.51730 * 180.02562 * 24 22 21 38 38 H 1.09003 * 110.03622 * 121.37719 * 26 11 10 39 39 H 1.09003 * 110.07498 * 359.96565 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3593 -4.7086 0.8230 13 6 0.3044 -4.8662 -1.3431 14 6 0.1414 -6.3787 -1.6350 15 6 1.4872 -6.9682 -1.1449 16 1 2.2621 -6.8283 -1.8986 17 7 1.3367 -8.3889 -0.8203 18 6 1.5491 -9.3230 -1.7684 19 8 1.8655 -8.9862 -2.8943 20 6 1.3979 -10.7443 -1.4437 21 6 1.5846 -11.7807 -2.3149 22 6 1.3766 -13.0147 -1.7445 23 17 1.5495 -14.4942 -2.6360 24 6 1.0321 -12.9911 -0.4512 25 16 0.9566 -11.3893 0.1313 26 6 1.8160 -6.1562 0.1248 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6848 -3.7145 0.8894 30 1 2.6848 -3.7145 -0.8906 31 1 -0.6709 -4.3892 -1.2461 32 1 0.8872 -4.3846 -2.1282 33 1 0.0089 -6.5538 -2.7027 34 1 -0.6917 -6.7940 -1.0679 35 1 1.0842 -8.6573 0.0770 36 1 1.8672 -11.6442 -3.3484 37 1 0.8336 -13.8693 0.1454 38 1 1.4765 -6.6937 1.0102 39 1 2.8895 -5.9771 0.1859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755743276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:30 Heat of formation + Delta-G solvation = -32.337433 kcal Electronic energy + Delta-G solvation = -22114.235230 eV Core-core repulsion = 18594.059607 eV Total energy + Delta-G solvation = -3520.175622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16964 -39.56728 -38.80959 -37.01992 -36.45348 -34.92209 -32.98641 -31.12220 -30.12996 -28.95237 -26.54856 -25.73009 -23.92527 -22.86366 -21.64324 -20.94185 -20.39793 -19.76039 -19.03404 -17.65089 -17.27838 -16.74622 -16.67289 -16.24232 -15.89754 -15.54555 -15.15582 -14.97371 -14.74406 -14.58914 -14.25420 -14.23563 -13.90707 -13.51410 -13.23282 -12.88647 -12.81971 -12.52578 -12.44169 -12.39460 -12.11459 -12.09841 -11.91504 -11.76602 -11.73790 -11.56790 -11.37172 -11.24264 -10.91048 -10.28798 -9.99021 -9.50421 -8.96815 -7.94321 -5.22154 -0.71979 0.18592 0.44393 1.02388 1.45545 1.47515 1.48299 1.58325 2.00048 2.01175 2.56845 3.39203 3.52007 3.60157 3.70383 3.88958 3.93378 4.10014 4.16237 4.38953 4.48478 4.50564 4.52737 4.61083 4.67021 4.77523 4.82538 4.89229 4.91805 5.05719 5.07848 5.14254 5.24841 5.40692 5.48089 5.50019 5.57415 6.28864 6.36643 7.03367 7.35124 8.12857 8.35840 9.29448 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.044646 B = 0.001849 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.000624 B =15140.975860 C =15326.700425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.087 4.087 12 H 0.076 0.924 13 C -0.110 4.110 14 C -0.123 4.123 15 C 0.146 3.854 16 H 0.080 0.920 17 N -0.702 5.702 18 C 0.589 3.411 19 O -0.570 6.570 20 C -0.287 4.287 21 C -0.059 4.059 22 C -0.079 4.079 23 Cl -0.049 7.049 24 C -0.221 4.221 25 S 0.327 5.673 26 C -0.109 4.109 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.022 0.978 30 H 0.015 0.985 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.150 0.850 37 H 0.208 0.792 38 H 0.099 0.901 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -32.411 2.759 32.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.029 3.971 11 C -0.106 4.106 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.041 3.959 16 H 0.098 0.902 17 N -0.353 5.353 18 C 0.376 3.624 19 O -0.450 6.450 20 C -0.408 4.408 21 C -0.093 4.093 22 C -0.119 4.119 23 Cl -0.020 7.020 24 C -0.360 4.360 25 S 0.594 5.406 26 C -0.148 4.148 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.168 0.832 37 H 0.225 0.775 38 H 0.118 0.882 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.814 -31.556 3.334 31.742 hybrid contribution 0.236 0.287 -1.530 1.574 sum 1.050 -31.269 1.804 31.338 Atomic orbital electron populations 1.69816 1.06529 1.25938 1.59706 1.25553 0.96433 1.01050 1.03894 0.85087 0.78211 0.79888 0.76661 1.19149 1.22177 1.21890 1.19685 0.91489 0.85553 1.40857 0.90826 1.42572 1.05693 1.01151 1.89252 1.20993 0.93843 0.84879 0.97346 1.21775 0.96961 0.93784 0.98090 0.90528 1.22228 1.00060 0.95720 0.96776 1.22805 0.97577 0.94688 1.01079 1.21796 0.97749 0.78434 0.97894 0.90231 1.45794 1.69920 1.05902 1.13707 1.17159 0.76347 0.84306 0.84570 1.90842 1.49344 1.82274 1.22582 1.24425 1.18248 0.96473 1.01654 1.20545 0.97753 0.89479 1.01492 1.19506 1.10579 0.88439 0.93343 1.98380 1.96528 1.31983 1.75146 1.25704 1.05990 1.06008 0.98262 1.82866 1.59626 0.92993 1.05082 1.22316 1.01389 0.93908 0.97145 0.94040 0.79317 0.95981 0.96728 0.92267 0.93164 0.92301 0.89573 0.75074 0.83214 0.77530 0.88214 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -37.76 5.45 -343.45 -1.87 -39.63 16 10 C 0.16 6.07 5.32 86.38 0.46 6.53 16 11 C -0.09 -2.55 2.96 -10.07 -0.03 -2.58 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.11 -3.33 6.09 31.67 0.19 -3.13 16 14 C -0.12 -2.99 6.58 31.89 0.21 -2.78 16 15 C 0.15 3.27 3.22 46.06 0.15 3.42 16 16 H 0.08 2.16 7.56 -2.39 -0.02 2.15 16 17 N -0.70 -12.58 5.15 -441.50 -2.28 -14.86 16 18 C 0.59 13.29 7.78 86.42 0.67 13.97 16 19 O -0.57 -18.04 16.49 -4.36 -0.07 -18.11 16 20 C -0.29 -4.83 6.45 24.08 0.16 -4.68 16 21 C -0.06 -1.03 9.89 21.73 0.21 -0.81 16 22 C -0.08 -1.09 6.25 21.11 0.13 -0.96 16 23 Cl -0.05 -0.68 29.10 -2.72 -0.08 -0.76 16 24 C -0.22 -1.91 10.77 66.83 0.72 -1.19 16 25 S 0.33 2.59 22.15 -56.49 -1.25 1.34 16 26 C -0.11 -2.29 6.19 31.32 0.19 -2.10 16 27 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.37 20.10 7.55 -92.70 -0.70 19.40 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.01 0.59 8.01 -2.38 -0.02 0.58 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.75 7.76 -2.39 -0.02 1.73 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 4.61 7.48 -92.71 -0.69 3.92 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.10 1.49 7.73 -2.39 -0.02 1.47 16 39 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 Total: -1.00 -71.92 355.98 0.83 -71.08 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.30 Total: 22.90 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.37 Total: -11.24 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -3.86 Total: -113.78 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.07 Total: -18.11 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.25 Total: 1.34 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -71.92 0.83 -71.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.747 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds