Wall clock time and date at job start Tue Mar 31 2020 15:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47244 * 2 1 4 4 C 1.53008 * 109.46767 * 240.00742 * 2 1 3 5 5 F 1.39904 * 109.47074 * 179.97438 * 4 2 1 6 6 N 1.46500 * 109.47354 * 120.00926 * 2 1 3 7 7 C 1.34781 * 119.99683 * 274.99464 * 6 2 1 8 8 O 1.21368 * 119.99807 * 0.02562 * 7 6 2 9 9 C 1.49265 * 119.99738 * 180.02562 * 7 6 2 10 10 O 1.21390 * 119.99909 * 359.97438 * 9 7 6 11 11 N 1.34773 * 119.99853 * 179.72983 * 9 7 6 12 12 C 1.38965 * 120.00332 * 176.01320 * 11 9 7 13 13 C 1.39561 * 119.84275 * 34.75829 * 12 11 9 14 14 C 1.36313 * 120.17460 * 179.71850 * 13 12 11 15 15 C 1.40939 * 119.85655 * 0.55779 * 14 13 12 16 16 C 1.41063 * 120.15793 * 179.74201 * 15 14 13 17 17 H 1.07994 * 120.00034 * 214.75463 * 16 15 14 18 18 C 1.39984 * 119.99795 * 34.75716 * 16 15 14 19 19 N 1.30828 * 119.99735 * 355.57748 * 18 16 15 20 20 Si 1.86793 * 119.99839 * 175.58689 * 18 16 15 21 21 H 1.48500 * 109.47689 * 59.99345 * 20 18 16 22 22 H 1.48508 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47143 * 299.99472 * 20 18 16 24 24 C 1.40890 * 119.69354 * 359.71597 * 15 14 13 25 25 C 1.36429 * 119.81881 * 0.02562 * 24 15 14 26 26 Cl 1.73606 * 119.92598 * 179.97438 * 25 24 15 27 27 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46569 * 299.98797 * 1 2 3 29 29 H 1.08993 * 109.47155 * 59.99296 * 1 2 3 30 30 H 1.08995 * 109.47175 * 299.99677 * 4 2 1 31 31 H 1.08998 * 109.46855 * 60.00015 * 4 2 1 32 32 H 0.96993 * 120.00105 * 95.00322 * 6 2 1 33 33 H 0.97002 * 119.99942 * 356.00981 * 11 9 7 34 34 H 1.08002 * 119.91043 * 359.97438 * 13 12 11 35 35 H 1.08004 * 120.07405 * 180.25108 * 14 13 12 36 36 H 0.97001 * 119.99574 * 179.97438 * 19 18 16 37 37 H 1.07994 * 120.08816 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 9 3.4390 -0.7207 -1.2498 6 7 2.0184 -0.6908 1.1960 7 6 2.1472 -0.0185 2.3571 8 8 1.8582 1.1590 2.4118 9 6 2.6454 -0.7222 3.5756 10 8 2.9340 -1.9000 3.5209 11 7 2.7794 -0.0487 4.7352 12 6 3.1636 -0.7212 5.8890 13 6 4.0627 -1.7853 5.8058 14 6 4.4486 -2.4460 6.9339 15 6 3.9285 -2.0601 8.1857 16 6 4.3193 -2.7429 9.3565 17 1 3.6119 -2.8855 10.1601 18 6 5.6239 -3.2357 9.4769 19 7 6.4547 -3.1398 8.4708 20 14 6.1785 -4.0305 11.0737 21 1 5.3219 -5.2082 11.3643 22 1 7.5921 -4.4669 10.9446 23 1 6.0624 -3.0486 12.1818 24 6 3.0167 -0.9887 8.2623 25 6 2.6434 -0.3330 7.1257 26 17 1.5196 0.9871 7.2168 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 -1.7488 -1.2495 31 1 1.6766 -0.2072 -2.1393 32 1 2.2491 -1.6319 1.1523 33 1 2.6077 0.9056 4.7645 34 1 4.4570 -2.0834 4.8455 35 1 5.1476 -3.2667 6.8682 36 1 7.3589 -3.4810 8.5543 37 1 2.6145 -0.6874 9.2182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453765708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:14 Heat of formation + Delta-G solvation = -112.288013 kcal Electronic energy + Delta-G solvation = -24757.940914 eV Core-core repulsion = 20668.085198 eV Total energy + Delta-G solvation = -4089.855716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.94526 -40.64425 -38.97820 -37.44547 -36.16742 -35.68588 -34.61746 -33.07428 -31.59104 -29.70816 -29.12263 -26.96291 -26.07435 -24.20329 -22.00818 -21.48908 -20.94632 -19.98233 -18.51045 -17.58798 -17.25720 -16.50206 -16.25621 -16.11577 -15.70196 -15.44305 -15.22537 -14.70937 -14.47848 -14.17734 -13.91001 -13.43956 -13.15368 -13.07688 -12.74175 -12.57423 -12.39710 -12.19974 -11.84996 -11.63312 -11.58333 -11.32111 -11.28376 -11.14731 -10.84775 -10.68578 -10.47524 -10.07675 -9.84381 -9.58186 -9.47356 -9.26998 -9.00468 -7.67656 -7.12229 -6.81279 -4.55766 1.48593 2.35713 2.56745 2.70841 2.97224 3.01670 3.05083 3.06886 3.48041 3.80858 3.85128 3.96425 4.44061 4.46681 4.48860 4.68745 4.71552 4.96975 5.22444 5.31494 5.37863 5.51330 5.82552 6.01756 6.06630 6.46648 6.55427 6.74822 6.89588 6.94836 7.04585 7.19655 7.30373 7.64001 7.70810 7.83510 7.91796 8.04485 8.37003 8.42166 8.68588 8.71405 10.09032 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.002914 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.717678 B = 9606.057281 C =10862.395009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 H 0.103 0.897 4 C 0.055 3.945 5 F -0.211 7.211 6 N -0.700 5.700 7 C 0.516 3.484 8 O -0.522 6.522 9 C 0.491 3.509 10 O -0.511 6.511 11 N -0.611 5.611 12 C 0.002 3.998 13 C -0.080 4.080 14 C -0.141 4.141 15 C 0.113 3.887 16 C -0.452 4.452 17 H 0.081 0.919 18 C 0.070 3.930 19 N -0.799 5.799 20 Si 0.921 3.079 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.198 4.198 25 C -0.007 4.007 26 Cl -0.116 7.116 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.414 0.586 33 H 0.410 0.590 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.283 0.717 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 3.387 -14.098 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.003 3.997 3 H 0.121 0.879 4 C -0.001 4.001 5 F -0.192 7.192 6 N -0.354 5.354 7 C 0.298 3.702 8 O -0.397 6.397 9 C 0.272 3.728 10 O -0.388 6.388 11 N -0.256 5.256 12 C -0.092 4.092 13 C -0.100 4.100 14 C -0.161 4.161 15 C 0.109 3.891 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.148 4.148 19 N -0.425 5.425 20 Si 0.745 3.255 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.218 4.218 25 C -0.035 4.035 26 Cl -0.087 7.087 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.251 0.749 33 H 0.247 0.753 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.171 3.466 -14.176 16.261 hybrid contribution 0.281 -0.068 0.672 0.732 sum -6.890 3.398 -13.504 15.536 Atomic orbital electron populations 1.22130 0.93503 1.03050 1.03600 1.21692 0.95541 0.98691 0.83776 0.87935 1.22356 0.76378 1.02836 0.98498 1.92824 1.30582 1.98035 1.97718 1.45701 1.66101 1.15078 1.08532 1.20291 0.78448 0.86837 0.84657 1.90744 1.48661 1.15403 1.84887 1.19841 0.81223 0.87126 0.84604 1.90757 1.48486 1.15237 1.84272 1.42579 1.63851 1.12185 1.06955 1.16917 1.06254 1.03155 0.82841 1.20623 0.95227 0.94863 0.99300 1.21390 1.02692 1.01586 0.90459 1.17641 0.88999 0.89023 0.93401 1.19506 0.96610 1.30385 1.01621 0.90084 1.25959 0.96625 0.93746 0.98422 1.69724 1.06564 1.35388 1.30812 0.86155 0.78080 0.79958 0.81312 1.18834 1.20236 1.18887 1.20665 1.06802 0.99174 0.95206 1.20211 0.96088 0.92801 0.94421 1.98273 1.62393 1.49435 1.98637 0.91720 0.90976 0.90927 0.89873 0.88948 0.74887 0.75340 0.86297 0.84430 0.90573 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.48 37.16 0.35 -0.82 16 2 C 0.11 0.94 2.94 -67.93 -0.20 0.74 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 4 C 0.05 0.36 7.05 37.16 0.26 0.62 16 5 F -0.21 -2.20 17.28 2.25 0.04 -2.16 16 6 N -0.70 -8.14 4.99 -54.29 -0.27 -8.41 16 7 C 0.52 7.81 7.85 -11.67 -0.09 7.72 16 8 O -0.52 -8.61 16.14 5.48 0.09 -8.52 16 9 C 0.49 8.81 7.71 -11.67 -0.09 8.72 16 10 O -0.51 -10.13 13.86 5.46 0.08 -10.05 16 11 N -0.61 -11.58 5.00 -10.18 -0.05 -11.63 16 12 C 0.00 0.05 6.31 -83.60 -0.53 -0.48 16 13 C -0.08 -1.87 8.61 -39.78 -0.34 -2.22 16 14 C -0.14 -3.53 8.61 -39.25 -0.34 -3.87 16 15 C 0.11 2.83 5.55 -106.80 -0.59 2.24 16 16 C -0.45 -11.27 9.02 -37.86 -0.34 -11.61 16 17 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 18 C 0.07 1.66 5.42 -17.33 -0.09 1.56 16 19 N -0.80 -19.65 10.59 55.55 0.59 -19.06 16 20 Si 0.92 17.93 29.56 -169.99 -5.03 12.91 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.20 -4.60 9.50 -39.23 -0.37 -4.98 16 25 C -0.01 -0.16 6.30 -39.70 -0.25 -0.41 16 26 Cl -0.12 -2.14 27.92 -51.86 -1.45 -3.59 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 4.50 8.07 -40.82 -0.33 4.17 16 33 H 0.41 7.21 7.52 -40.82 -0.31 6.91 16 34 H 0.12 2.73 6.18 -52.49 -0.32 2.41 16 35 H 0.14 3.56 6.13 -52.48 -0.32 3.24 16 36 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 37 H 0.11 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -28.17 341.42 -7.24 -35.41 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.76 Total: 12.73 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.63 Total: -2.76 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.27 Total: -39.11 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -1.45 Total: -3.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.17 -7.24 -35.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453765708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.878 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds