Wall clock time and date at job start Tue Mar 31 2020 15:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47244 * 2 1 4 4 C 1.53008 * 109.46767 * 240.00742 * 2 1 3 5 5 F 1.39904 * 109.47074 * 179.97438 * 4 2 1 6 6 N 1.46500 * 109.47354 * 120.00926 * 2 1 3 7 7 C 1.34781 * 119.99683 * 274.99464 * 6 2 1 8 8 O 1.21368 * 119.99807 * 0.02562 * 7 6 2 9 9 C 1.49265 * 119.99738 * 180.02562 * 7 6 2 10 10 O 1.21390 * 119.99909 * 359.97438 * 9 7 6 11 11 N 1.34773 * 119.99853 * 179.72983 * 9 7 6 12 12 C 1.38965 * 120.00332 * 176.01320 * 11 9 7 13 13 C 1.39561 * 119.84275 * 34.75829 * 12 11 9 14 14 C 1.36313 * 120.17460 * 179.71850 * 13 12 11 15 15 C 1.40939 * 119.85655 * 0.55779 * 14 13 12 16 16 C 1.41063 * 120.15793 * 179.74201 * 15 14 13 17 17 H 1.07994 * 120.00034 * 214.75463 * 16 15 14 18 18 C 1.39984 * 119.99795 * 34.75716 * 16 15 14 19 19 N 1.30828 * 119.99735 * 355.57748 * 18 16 15 20 20 Si 1.86793 * 119.99839 * 175.58689 * 18 16 15 21 21 H 1.48500 * 109.47689 * 59.99345 * 20 18 16 22 22 H 1.48508 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47143 * 299.99472 * 20 18 16 24 24 C 1.40890 * 119.69354 * 359.71597 * 15 14 13 25 25 C 1.36429 * 119.81881 * 0.02562 * 24 15 14 26 26 Cl 1.73606 * 119.92598 * 179.97438 * 25 24 15 27 27 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46569 * 299.98797 * 1 2 3 29 29 H 1.08993 * 109.47155 * 59.99296 * 1 2 3 30 30 H 1.08995 * 109.47175 * 299.99677 * 4 2 1 31 31 H 1.08998 * 109.46855 * 60.00015 * 4 2 1 32 32 H 0.96993 * 120.00105 * 95.00322 * 6 2 1 33 33 H 0.97002 * 119.99942 * 356.00981 * 11 9 7 34 34 H 1.08002 * 119.91043 * 359.97438 * 13 12 11 35 35 H 1.08004 * 120.07405 * 180.25108 * 14 13 12 36 36 H 0.97001 * 119.99574 * 179.97438 * 19 18 16 37 37 H 1.07994 * 120.08816 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 9 3.4390 -0.7207 -1.2498 6 7 2.0184 -0.6908 1.1960 7 6 2.1472 -0.0185 2.3571 8 8 1.8582 1.1590 2.4118 9 6 2.6454 -0.7222 3.5756 10 8 2.9340 -1.9000 3.5209 11 7 2.7794 -0.0487 4.7352 12 6 3.1636 -0.7212 5.8890 13 6 4.0627 -1.7853 5.8058 14 6 4.4486 -2.4460 6.9339 15 6 3.9285 -2.0601 8.1857 16 6 4.3193 -2.7429 9.3565 17 1 3.6119 -2.8855 10.1601 18 6 5.6239 -3.2357 9.4769 19 7 6.4547 -3.1398 8.4708 20 14 6.1785 -4.0305 11.0737 21 1 5.3219 -5.2082 11.3643 22 1 7.5921 -4.4669 10.9446 23 1 6.0624 -3.0486 12.1818 24 6 3.0167 -0.9887 8.2623 25 6 2.6434 -0.3330 7.1257 26 17 1.5196 0.9871 7.2168 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 -1.7488 -1.2495 31 1 1.6766 -0.2072 -2.1393 32 1 2.2491 -1.6319 1.1523 33 1 2.6077 0.9056 4.7645 34 1 4.4570 -2.0834 4.8455 35 1 5.1476 -3.2667 6.8682 36 1 7.3589 -3.4810 8.5543 37 1 2.6145 -0.6874 9.2182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453765708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:14 Heat of formation + Delta-G solvation = -129.614515 kcal Electronic energy + Delta-G solvation = -24758.692247 eV Core-core repulsion = 20668.085198 eV Total energy + Delta-G solvation = -4090.607049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.61992 -42.02597 -40.40228 -39.09682 -37.36425 -37.16532 -36.21203 -34.80239 -32.49337 -31.52662 -30.90422 -27.71687 -27.47462 -25.65648 -23.56588 -22.99387 -22.12318 -21.38361 -19.90818 -19.41165 -18.42757 -17.85212 -17.40517 -17.10920 -16.88813 -16.76985 -16.23447 -16.18509 -15.80584 -15.60519 -15.03470 -14.94078 -14.77609 -14.34652 -14.14084 -13.87999 -13.59377 -13.42264 -13.30292 -12.95193 -12.90861 -12.71020 -12.50048 -12.34397 -12.14154 -12.04941 -11.78545 -11.76501 -11.56130 -11.30869 -10.90112 -10.61218 -10.43894 -9.49941 -8.91398 -8.59124 -6.43614 0.08326 0.76786 0.85752 1.21045 1.32572 1.42783 1.51742 1.54559 2.08033 2.22361 2.57825 2.69225 3.29423 3.38405 3.51405 3.86640 3.94257 4.21547 4.24652 4.39678 4.61239 4.75414 4.76132 4.79690 4.87206 4.91681 5.08998 5.15984 5.22306 5.26826 5.37057 5.48482 5.81737 5.90701 5.97903 6.11020 6.31723 6.53419 6.66532 6.80657 6.84316 6.94026 8.33171 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.002914 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.717678 B = 9606.057281 C =10862.395009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 H 0.090 0.910 4 C 0.053 3.947 5 F -0.234 7.234 6 N -0.685 5.685 7 C 0.523 3.477 8 O -0.537 6.537 9 C 0.491 3.509 10 O -0.530 6.530 11 N -0.613 5.613 12 C 0.009 3.991 13 C -0.086 4.086 14 C -0.159 4.159 15 C 0.087 3.913 16 C -0.483 4.483 17 H 0.085 0.915 18 C 0.030 3.970 19 N -0.830 5.830 20 Si 0.991 3.009 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.260 1.260 24 C -0.204 4.204 25 C -0.011 4.011 26 Cl -0.082 7.082 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.419 0.581 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.289 0.711 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 3.734 -15.196 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.002 4.002 3 H 0.108 0.892 4 C -0.002 4.002 5 F -0.216 7.216 6 N -0.339 5.339 7 C 0.303 3.697 8 O -0.414 6.414 9 C 0.273 3.727 10 O -0.408 6.408 11 N -0.258 5.258 12 C -0.085 4.085 13 C -0.106 4.106 14 C -0.179 4.179 15 C 0.084 3.916 16 C -0.512 4.512 17 H 0.103 0.897 18 C -0.185 4.185 19 N -0.456 5.456 20 Si 0.812 3.188 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.225 4.225 25 C -0.040 4.040 26 Cl -0.054 7.054 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.146 0.854 32 H 0.256 0.744 33 H 0.255 0.745 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.292 3.820 -15.328 17.841 hybrid contribution 0.513 -0.096 0.837 0.986 sum -7.779 3.724 -14.492 16.864 Atomic orbital electron populations 1.22093 0.91830 1.03917 1.03826 1.22001 0.96807 0.98101 0.83265 0.89188 1.22639 0.74777 1.04426 0.98339 1.92780 1.32837 1.98177 1.97775 1.45803 1.64466 1.15275 1.08317 1.19697 0.78901 0.86510 0.84626 1.90744 1.49858 1.15779 1.85034 1.20432 0.80116 0.86988 0.85150 1.90744 1.49026 1.16273 1.84715 1.42552 1.64216 1.12505 1.06560 1.16940 1.05136 1.02381 0.84088 1.20637 0.95688 0.95522 0.98747 1.21290 1.03361 1.01988 0.91255 1.17925 0.89989 0.90073 0.93641 1.19778 0.97643 1.31877 1.01924 0.89716 1.26831 0.96190 0.93747 1.01682 1.69802 1.07052 1.36085 1.32671 0.85095 0.77798 0.78983 0.76928 1.18254 1.19478 1.18439 1.20787 1.06571 0.98930 0.96170 1.20239 0.96310 0.93497 0.93919 1.98275 1.60977 1.47525 1.98585 0.90530 0.93425 0.88014 0.87642 0.85439 0.74354 0.74455 0.86395 0.86102 0.90033 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.48 71.98 0.68 -1.15 16 2 C 0.10 1.55 2.94 44.99 0.13 1.69 16 3 H 0.09 1.65 7.58 -2.38 -0.02 1.63 16 4 C 0.05 0.53 7.05 71.98 0.51 1.04 16 5 F -0.23 -4.48 17.28 44.97 0.78 -3.70 16 6 N -0.69 -15.00 4.99 -444.03 -2.22 -17.22 16 7 C 0.52 15.39 7.85 87.21 0.68 16.08 16 8 O -0.54 -17.26 16.14 -3.30 -0.05 -17.32 16 9 C 0.49 17.49 7.71 87.21 0.67 18.16 16 10 O -0.53 -21.07 13.86 -3.37 -0.05 -21.11 16 11 N -0.61 -23.05 5.00 -304.45 -1.52 -24.57 16 12 C 0.01 0.40 6.31 38.68 0.24 0.64 16 13 C -0.09 -4.13 8.61 22.14 0.19 -3.93 16 14 C -0.16 -8.26 8.61 22.48 0.19 -8.06 16 15 C 0.09 4.50 5.55 -21.28 -0.12 4.38 16 16 C -0.48 -24.68 9.02 23.39 0.21 -24.46 16 17 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 18 C 0.03 1.43 5.42 85.27 0.46 1.89 16 19 N -0.83 -41.91 10.59 21.83 0.23 -41.68 16 20 Si 0.99 36.78 29.56 68.60 2.03 38.81 16 21 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 24 C -0.20 -9.60 9.50 22.50 0.21 -9.38 16 25 C -0.01 -0.49 6.30 22.19 0.14 -0.35 16 26 Cl -0.08 -2.93 27.92 -2.72 -0.08 -3.01 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.13 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.42 8.51 8.07 -92.71 -0.75 7.76 16 33 H 0.42 14.40 7.52 -92.71 -0.70 13.70 16 34 H 0.12 5.59 6.18 -2.91 -0.02 5.58 16 35 H 0.12 6.61 6.13 -2.91 -0.02 6.59 16 36 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 37 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -62.22 341.42 3.05 -59.17 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.29 Total: 34.09 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.22 Total: -3.46 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.51 Total: -83.48 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.10 Total: -38.43 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.08 Total: -3.01 kcal Total: -62.22 3.05 -59.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453765708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.440 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds