Wall clock time and date at job start Tue Mar 31 2020 14:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.88902 * 2 1 4 4 C 1.55129 * 111.18906 * 236.06452 * 2 1 3 5 5 N 1.47421 * 104.72458 * 279.19201 * 4 2 1 6 6 C 1.34784 * 125.64843 * 155.81647 * 5 4 2 7 7 O 1.21722 * 119.99412 * 359.71977 * 6 5 4 8 8 C 1.46431 * 120.00014 * 179.71962 * 6 5 4 9 9 S 1.75831 * 125.46303 * 0.02686 * 8 6 5 10 10 C 1.70608 * 91.58662 * 179.97438 * 9 8 6 11 11 C 1.33773 * 110.99930 * 359.97438 * 10 9 8 12 12 C 1.36791 * 125.46078 * 179.71949 * 8 6 5 13 13 Cl 1.73600 * 123.38091 * 0.02562 * 12 8 6 14 14 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 15 15 C 1.54320 * 107.27210 * 1.28563 * 14 5 4 16 16 H 1.08997 * 110.72011 * 140.73537 * 15 14 5 17 17 N 1.46497 * 110.71903 * 263.83160 * 15 14 5 18 18 C 1.36945 * 119.99889 * 273.54606 * 17 15 14 19 19 H 1.07997 * 119.99945 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00096 * 180.02562 * 18 17 15 21 21 N 1.31631 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00170 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46839 * 90.00181 * 22 20 18 24 24 H 1.48499 * 109.47424 * 209.99653 * 22 20 18 25 25 H 1.48500 * 109.47077 * 330.00212 * 22 20 18 26 26 H 1.09006 * 109.47338 * 296.12230 * 1 2 3 27 27 H 1.09007 * 109.47338 * 56.11847 * 1 2 3 28 28 H 1.08992 * 109.47872 * 176.11933 * 1 2 3 29 29 H 1.09008 * 109.46727 * 183.88277 * 3 2 1 30 30 H 1.09000 * 109.47082 * 303.87774 * 3 2 1 31 31 H 1.08995 * 109.47036 * 63.88411 * 3 2 1 32 32 H 1.09005 * 110.49746 * 160.35615 * 4 2 1 33 33 H 1.08997 * 110.34301 * 37.96022 * 4 2 1 34 34 H 1.08003 * 124.50212 * 179.97438 * 10 9 8 35 35 H 1.08005 * 122.45148 * 179.97438 * 11 10 9 36 36 H 1.09010 * 109.88204 * 120.70275 * 14 5 4 37 37 H 1.09002 * 109.88404 * 241.86735 * 14 5 4 38 38 H 0.96995 * 120.00271 * 93.54166 * 17 15 14 39 39 H 0.96999 * 119.99785 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8075 -1.2000 5 7 2.0137 -2.2162 -0.7725 6 6 1.9469 -3.2836 -1.5928 7 8 1.9417 -3.1242 -2.7995 8 6 1.8804 -4.6347 -1.0323 9 16 1.8780 -5.0294 0.6812 10 6 1.7838 -6.6993 0.3449 11 6 1.7566 -6.9220 -0.9739 12 6 1.8043 -5.7920 -1.7577 13 17 1.7751 -5.8313 -3.4930 14 6 2.0284 -2.2644 0.6969 15 6 2.0860 -0.8076 1.2025 16 1 1.4547 -0.6792 2.0817 17 7 3.4666 -0.4152 1.4963 18 6 4.0065 -0.6797 2.7267 19 1 3.4144 -1.1772 3.4806 20 6 5.3144 -0.3075 3.0053 21 7 6.0359 0.2993 2.0867 22 14 6.0507 -0.6676 4.6838 23 1 6.6980 -2.0041 4.6640 24 1 7.0631 0.3677 5.0129 25 1 4.9764 -0.6531 5.7090 26 1 -0.3634 0.4525 0.9227 27 1 -0.3634 0.5729 -0.8532 28 1 -0.3634 -1.0252 -0.0695 29 1 3.1630 1.4032 -0.0696 30 1 1.6698 1.9731 -0.8532 31 1 1.7824 1.9301 0.9227 32 1 3.1252 -0.5273 -1.3986 33 1 1.4763 -0.6457 -2.0857 34 1 1.7506 -7.4739 1.0968 35 1 1.6985 -7.9158 -1.3928 36 1 1.1216 -2.7476 1.0610 37 1 2.9061 -2.8113 1.0411 38 1 3.9982 0.0319 0.8194 39 1 6.9500 0.5591 2.2813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995834310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:45 Heat of formation + Delta-G solvation = 11.667002 kcal Electronic energy + Delta-G solvation = -24042.434493 eV Core-core repulsion = 20524.167046 eV Total energy + Delta-G solvation = -3518.267447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08317 -38.52457 -37.30682 -35.99633 -34.01301 -33.29645 -30.84421 -29.98911 -28.06132 -26.79782 -26.50299 -24.63740 -23.80830 -21.79057 -20.71895 -19.24288 -18.87688 -17.66921 -17.23070 -16.11980 -15.88610 -15.74194 -14.97224 -14.51537 -14.19560 -13.97723 -13.86232 -13.55382 -13.29281 -13.00365 -12.80131 -12.73738 -12.51681 -12.20138 -11.88085 -11.78944 -11.57970 -11.39815 -11.18104 -10.98790 -10.95310 -10.76994 -10.60991 -10.42420 -10.28130 -9.91972 -9.75473 -9.65279 -9.05573 -8.96319 -8.61367 -8.20073 -7.13216 -5.89275 -3.19910 0.37765 1.19264 1.74617 2.16861 2.50410 3.17409 3.32150 3.35821 3.41227 3.43446 4.46640 4.53863 4.80972 4.98265 5.01408 5.06208 5.19470 5.37544 5.53635 5.56036 5.57571 5.67602 5.80616 5.87053 5.89314 5.93582 6.05212 6.14797 6.17138 6.18838 6.30072 6.33292 6.49452 6.57581 6.68587 6.86948 7.58374 7.74959 8.28006 8.33622 9.40421 9.93931 10.28801 11.32576 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.004466 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.384944 B = 6267.948723 C = 7498.938762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.596 3.404 7 O -0.525 6.525 8 C -0.258 4.258 9 S 0.283 5.717 10 C -0.254 4.254 11 C -0.146 4.146 12 C 0.010 3.990 13 Cl -0.023 7.023 14 C 0.055 3.945 15 C 0.185 3.815 16 H 0.074 0.926 17 N -0.710 5.710 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.927 5.927 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.388 0.612 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 -9.446 -3.750 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.002 3.998 5 N -0.332 5.332 6 C 0.383 3.617 7 O -0.404 6.404 8 C -0.380 4.380 9 S 0.552 5.448 10 C -0.392 4.392 11 C -0.177 4.177 12 C -0.033 4.033 13 Cl 0.006 6.994 14 C -0.072 4.072 15 C 0.072 3.928 16 H 0.091 0.909 17 N -0.351 5.351 18 C -0.381 4.381 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.224 0.776 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.761 -8.622 -3.050 14.898 hybrid contribution 0.737 -1.354 -0.629 1.665 sum -11.023 -9.977 -3.679 15.316 Atomic orbital electron populations 1.21685 0.93831 1.01524 1.01728 1.22058 0.95389 0.96147 0.95413 1.21577 1.02125 0.93416 1.01166 1.22346 1.01304 0.79019 0.97146 1.48217 1.71359 1.06197 1.07457 1.16371 0.77720 0.81877 0.85706 1.90853 1.51174 1.85226 1.13163 1.24568 1.17848 0.97443 0.98112 1.84000 1.64509 0.95363 1.00977 1.25633 1.08139 1.04962 1.00420 1.19664 1.06687 0.99040 0.92307 1.20256 1.03309 0.92495 0.87199 1.98382 1.96292 1.98652 1.06112 1.23506 1.00977 1.03699 0.79038 1.21164 0.88887 0.88292 0.94451 0.90866 1.42481 1.08190 1.69684 1.14759 1.19206 0.95548 1.32810 0.90488 0.90930 1.24748 0.96823 1.00773 0.97881 1.69657 1.09548 1.44980 1.33223 0.86223 0.78936 0.77501 0.83677 1.21647 1.21740 1.20623 0.92189 0.92676 0.92883 0.91150 0.93505 0.91980 0.90916 0.90839 0.81010 0.83451 0.92229 0.89724 0.77633 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.59 37.15 0.32 -1.30 16 2 C -0.09 -1.32 0.83 -152.24 -0.13 -1.45 16 3 C -0.13 -1.89 8.22 37.16 0.31 -1.58 16 4 C 0.12 2.03 5.82 -2.41 -0.01 2.01 16 5 N -0.60 -10.18 3.31 -172.01 -0.57 -10.75 16 6 C 0.60 10.69 7.81 -12.96 -0.10 10.59 16 7 O -0.53 -10.60 15.34 5.17 0.08 -10.52 16 8 C -0.26 -4.02 6.38 -36.81 -0.23 -4.25 16 9 S 0.28 3.52 18.42 -107.50 -1.98 1.54 16 10 C -0.25 -2.65 10.92 29.17 0.32 -2.33 16 11 C -0.15 -1.68 10.06 -41.38 -0.42 -2.10 16 12 C 0.01 0.15 6.40 -40.34 -0.26 -0.11 16 13 Cl -0.02 -0.34 27.24 -51.86 -1.41 -1.76 16 14 C 0.06 0.90 4.59 -3.07 -0.01 0.89 16 15 C 0.18 3.22 2.86 -66.10 -0.19 3.03 16 16 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 17 N -0.71 -15.79 4.61 -51.65 -0.24 -16.03 16 18 C -0.25 -6.24 9.98 -15.06 -0.15 -6.39 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 21 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 22 Si 0.91 21.03 29.55 -169.99 -5.02 16.00 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 28 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 29 H 0.07 1.24 6.38 -51.92 -0.33 0.91 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.30 7.99 -51.93 -0.41 0.89 16 33 H 0.07 1.16 7.95 -51.93 -0.41 0.74 16 34 H 0.17 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.06 0.84 6.83 -51.92 -0.35 0.48 16 37 H 0.08 1.54 6.89 -51.93 -0.36 1.18 16 38 H 0.39 9.34 6.10 -40.82 -0.25 9.09 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -29.53 343.71 -8.93 -38.46 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.03 Total: 6.72 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.66 Total: -3.23 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.08 Total: -52.39 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.98 Total: 1.54 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.41 Total: -1.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.53 -8.93 -38.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995834310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.128 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds