Wall clock time and date at job start Tue Mar 31 2020 15:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.69810 * 2 1 4 4 C 1.53195 * 109.58339 * 239.64959 * 2 1 3 5 5 C 1.53041 * 109.31092 * 294.84430 * 4 2 1 6 6 H 1.09007 * 109.45925 * 58.64647 * 5 4 2 7 7 N 1.46497 * 109.46148 * 178.61244 * 5 4 2 8 8 C 1.36937 * 120.00409 * 205.02915 * 7 5 4 9 9 H 1.07990 * 119.99892 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99781 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00531 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99465 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47479 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.46962 * 239.99742 * 12 10 8 15 15 H 1.48494 * 109.47300 * 120.00031 * 12 10 8 16 16 C 1.53034 * 109.52875 * 298.63113 * 5 4 2 17 17 C 1.53197 * 109.31354 * 61.38640 * 16 5 4 18 18 N 1.46921 * 108.76078 * 305.34187 * 17 16 5 19 19 C 1.34783 * 120.63241 * 233.63454 * 18 17 16 20 20 O 1.21654 * 119.99668 * 174.35961 * 19 18 17 21 21 C 1.47043 * 119.99732 * 354.36281 * 19 18 17 22 22 C 1.44503 * 123.49295 * 316.03626 * 21 19 18 23 23 C 1.32693 * 113.09674 * 179.97438 * 22 21 19 24 24 S 1.75499 * 110.63052 * 359.97438 * 23 22 21 25 25 C 1.36224 * 123.48927 * 135.73460 * 21 19 18 26 26 Cl 1.73603 * 124.60680 * 0.04226 * 25 21 19 27 27 H 1.09000 * 109.47400 * 180.35620 * 1 2 3 28 28 H 1.09001 * 109.46836 * 300.35519 * 1 2 3 29 29 H 1.08999 * 109.47894 * 60.34925 * 1 2 3 30 30 H 1.09002 * 109.49800 * 174.89974 * 4 2 1 31 31 H 1.09002 * 109.49835 * 54.79608 * 4 2 1 32 32 H 0.97001 * 119.99512 * 25.03660 * 7 5 4 33 33 H 0.96998 * 119.99660 * 0.02562 * 11 10 8 34 34 H 1.09005 * 109.50207 * 181.32247 * 16 5 4 35 35 H 1.09001 * 109.50015 * 301.41822 * 16 5 4 36 36 H 1.09002 * 109.58333 * 185.56825 * 17 16 5 37 37 H 1.08994 * 109.71428 * 65.19953 * 17 16 5 38 38 H 1.07993 * 123.45159 * 359.97438 * 22 21 19 39 39 H 1.08001 * 124.68587 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0434 -0.7293 -1.2455 5 6 1.6414 -2.2040 -1.1703 6 1 0.5564 -2.2814 -1.0992 7 7 2.1021 -2.8977 -2.3756 8 6 1.4644 -4.0335 -2.7980 9 1 0.6220 -4.4181 -2.2424 10 6 1.9014 -4.6909 -3.9398 11 7 2.9283 -4.2224 -4.6167 12 14 1.0309 -6.2399 -4.5164 13 1 -0.0849 -6.5553 -3.5886 14 1 1.9933 -7.3708 -4.5349 15 1 0.4928 -6.0255 -5.8837 16 6 2.2802 -2.8461 0.0632 17 6 1.7691 -2.1411 1.3236 18 7 2.0226 -0.6997 1.1944 19 6 2.6945 -0.0319 2.1531 20 8 2.9876 1.1373 1.9884 21 6 3.0731 -0.7165 3.3981 22 6 2.1830 -1.5865 4.1323 23 6 2.7370 -2.0955 5.2253 24 16 4.3877 -1.5271 5.4041 25 6 4.3014 -0.6011 3.9758 26 17 5.6013 0.3611 3.3446 27 1 -0.3634 -1.0276 0.0064 28 1 -0.3633 0.5194 0.8868 29 1 -0.3635 0.5084 -0.8930 30 1 3.1296 -0.6503 -1.2915 31 1 1.6073 -0.2783 -2.1369 32 1 2.8590 -2.5524 -2.8744 33 1 3.3800 -3.4179 -4.3175 34 1 2.0127 -3.9021 0.1036 35 1 3.3641 -2.7470 0.0049 36 1 2.2945 -2.5276 2.1969 37 1 0.6989 -2.3154 1.4341 38 1 1.1707 -1.8004 3.8230 39 1 2.2406 -2.7669 5.9103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044762521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:24 Heat of formation + Delta-G solvation = 7.051273 kcal Electronic energy + Delta-G solvation = -23834.401089 eV Core-core repulsion = 20315.933489 eV Total energy + Delta-G solvation = -3518.467600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.51882 -38.15053 -37.12690 -36.68285 -34.77308 -32.48813 -31.93238 -29.92580 -29.11321 -27.25692 -25.49399 -23.94738 -23.13957 -22.07380 -21.22099 -19.87978 -18.79386 -18.15037 -17.28765 -16.74411 -16.31109 -15.28724 -14.78248 -14.70167 -14.30208 -14.18347 -13.92073 -13.71815 -13.63903 -13.53746 -13.34767 -12.85875 -12.83379 -12.51214 -11.99015 -11.86380 -11.66221 -11.44184 -11.29546 -11.11067 -10.92868 -10.83183 -10.54365 -10.41913 -10.07660 -9.91722 -9.83506 -9.18935 -9.14001 -8.93830 -8.79800 -8.51626 -7.05948 -6.12092 -3.12391 0.36085 0.72654 1.39262 1.73539 1.93065 2.85848 3.11144 3.49403 3.56180 3.65087 4.35983 4.63821 4.71459 4.77071 5.01286 5.11303 5.16511 5.24493 5.33779 5.41861 5.53230 5.55427 5.59589 5.69314 5.73229 5.76518 5.83403 5.99768 6.08950 6.21242 6.28476 6.38039 6.42493 6.57298 6.82191 6.96259 7.43981 7.78821 8.14738 8.73653 9.20617 10.07080 10.22371 11.36361 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003270 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.899004 B = 8561.684091 C = 8916.536687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.097 0.903 4 C -0.135 4.135 5 C 0.185 3.815 6 H 0.053 0.947 7 N -0.736 5.736 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.150 4.150 17 C 0.103 3.897 18 N -0.592 5.592 19 C 0.577 3.423 20 O -0.530 6.530 21 C -0.139 4.139 22 C -0.099 4.099 23 C -0.225 4.225 24 S 0.218 5.782 25 C -0.134 4.134 26 Cl 0.010 6.990 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.366 0.634 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.159 0.841 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 6.200 22.317 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.115 0.885 4 C -0.174 4.174 5 C 0.075 3.925 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.590 5.590 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.221 1.221 15 H -0.220 1.220 16 C -0.191 4.191 17 C -0.020 4.020 18 N -0.324 5.324 19 C 0.363 3.637 20 O -0.407 6.407 21 C -0.158 4.158 22 C -0.128 4.128 23 C -0.360 4.360 24 S 0.482 5.518 25 C -0.280 4.280 26 Cl 0.039 6.961 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.199 0.801 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.176 0.824 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.227 5.361 22.149 22.789 hybrid contribution -0.720 1.450 -0.086 1.621 sum -0.493 6.811 22.063 23.096 Atomic orbital electron populations 1.22145 0.94843 1.02815 1.02027 1.21200 0.94009 0.97154 0.83653 0.88483 1.22231 1.01307 0.97299 0.96530 1.20129 0.96838 0.88892 0.86674 0.92952 1.42460 1.37779 1.30094 1.27410 1.20081 1.12793 1.03128 1.10237 0.91693 1.25749 0.99422 1.04386 0.94667 1.70809 1.22202 1.24446 1.41508 0.83169 0.74647 0.75109 0.75542 1.22129 1.22054 1.22024 1.22652 1.01113 1.00535 0.94782 1.22032 1.00810 0.79240 0.99950 1.48090 1.54737 1.09560 1.20035 1.17454 0.77904 0.86027 0.82300 1.90808 1.54234 1.16079 1.79597 1.20318 0.93321 1.02954 0.99196 1.21158 1.00854 0.96447 0.94361 1.25539 0.98510 1.08381 1.03609 1.83180 1.11124 1.39529 1.17959 1.25176 0.94981 1.04998 1.02863 1.98412 1.44132 1.68180 1.85425 0.91617 0.92786 0.91214 0.91952 0.90590 0.80066 0.93270 0.90600 0.92382 0.89996 0.91382 0.82380 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.02 37.16 0.34 -1.67 16 2 C 0.14 2.08 3.22 -67.60 -0.22 1.87 16 3 H 0.10 1.49 7.00 -51.93 -0.36 1.13 16 4 C -0.13 -2.25 5.02 -26.61 -0.13 -2.39 16 5 C 0.18 3.51 2.52 -67.89 -0.17 3.34 16 6 H 0.05 1.01 6.44 -51.92 -0.33 0.68 16 7 N -0.74 -17.96 5.12 -53.39 -0.27 -18.23 16 8 C -0.33 -9.05 9.93 -15.06 -0.15 -9.20 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 11 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 12 Si 1.08 25.63 29.92 -169.99 -5.09 20.54 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 17 C 0.10 1.35 4.95 -3.71 -0.02 1.33 16 18 N -0.59 -8.45 2.68 -166.62 -0.45 -8.90 16 19 C 0.58 8.81 7.18 -12.69 -0.09 8.72 16 20 O -0.53 -9.57 15.67 5.23 0.08 -9.49 16 21 C -0.14 -1.76 4.98 -104.59 -0.52 -2.28 16 22 C -0.10 -0.92 8.00 -39.00 -0.31 -1.24 16 23 C -0.22 -1.67 11.11 28.84 0.32 -1.35 16 24 S 0.22 1.83 23.02 -107.50 -2.47 -0.65 16 25 C -0.13 -1.62 6.85 30.01 0.21 -1.41 16 26 Cl 0.01 0.13 28.15 -51.86 -1.46 -1.33 16 27 H 0.06 0.84 5.72 -51.93 -0.30 0.54 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.37 9.41 6.63 -40.82 -0.27 9.14 16 33 H 0.26 7.78 6.77 -40.82 -0.28 7.50 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.96 4.94 -51.93 -0.26 0.70 16 37 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 38 H 0.16 1.22 7.40 -52.49 -0.39 0.83 16 39 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -32.79 340.65 -9.51 -42.30 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.74 Total: 7.22 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.00 Total: -8.34 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.04 Total: -55.38 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.54 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.47 Total: -0.65 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.46 Total: -1.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.79 -9.51 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044762521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.349 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds