Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29380 * 1 3 3 Si 1.86808 * 120.00158 * 2 1 4 4 H 1.48499 * 109.47086 * 269.99842 * 3 2 1 5 5 H 1.48495 * 109.46782 * 30.00053 * 3 2 1 6 6 H 1.48502 * 109.47150 * 149.99877 * 3 2 1 7 7 C 1.46601 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99957 * 180.02562 * 7 2 1 9 9 O 1.22295 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.35694 * 116.99899 * 185.93858 * 9 7 2 11 11 C 1.38995 * 120.00083 * 6.05708 * 10 9 7 12 12 C 1.37940 * 120.00200 * 180.02562 * 11 10 9 13 13 C 1.38993 * 119.99798 * 359.97438 * 12 11 10 14 14 N 1.39784 * 120.00252 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99882 * 32.99230 * 14 13 12 16 16 O 1.21566 * 119.99979 * 5.38193 * 15 14 13 17 17 C 1.47809 * 120.00377 * 185.38621 * 15 14 13 18 18 C 1.39617 * 120.14265 * 357.30897 * 17 15 14 19 19 C 1.37936 * 119.85236 * 179.97438 * 18 17 15 20 20 C 1.38386 * 120.14187 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.29982 * 0.02562 * 20 19 18 22 22 C 1.37973 * 120.14457 * 0.02562 * 21 20 19 23 23 N 1.48018 * 120.07235 * 180.02562 * 22 21 20 24 24 O 1.31700 * 119.99977 * 52.82418 * 23 22 21 25 25 O 1.31699 * 120.00079 * 232.81581 * 23 22 21 26 26 C 1.39004 * 120.00052 * 0.26438 * 13 12 11 27 27 C 1.37942 * 119.99509 * 359.50105 * 26 13 12 28 28 H 0.97001 * 120.00141 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99414 * 359.97438 * 11 10 9 30 30 H 1.07994 * 120.00068 * 179.97438 * 12 11 10 31 31 H 0.96995 * 120.00431 * 212.99183 * 14 13 12 32 32 H 1.07999 * 120.07399 * 359.95613 * 18 17 15 33 33 H 1.07991 * 119.92426 * 179.72484 * 19 18 17 34 34 H 1.08006 * 119.84829 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.92944 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00097 * 179.72973 * 26 13 12 37 37 H 1.07997 * 119.99686 * 180.22443 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2279 1.6178 0.0000 4 1 2.4754 2.0464 -1.4001 5 1 1.4253 2.6526 0.7000 6 1 3.5254 1.4402 0.7001 7 6 2.0268 -1.2696 0.0006 8 1 3.1069 -1.2696 0.0010 9 8 1.4153 -2.3287 0.0006 10 6 2.1487 -3.4635 0.1262 11 6 3.5142 -3.3846 0.3733 12 6 4.2598 -4.5382 0.5005 13 6 3.6455 -5.7793 0.3821 14 7 4.4011 -6.9483 0.5104 15 6 5.4581 -6.9792 1.3461 16 8 5.6963 -6.0248 2.0604 17 6 6.3279 -8.1733 1.3940 18 6 6.0253 -9.2927 0.6164 19 6 6.8413 -10.4037 0.6654 20 6 7.9582 -10.4101 1.4825 21 6 8.2637 -9.3042 2.2555 22 6 7.4552 -8.1869 2.2167 23 7 7.7840 -7.0044 3.0440 24 8 8.9845 -6.4670 2.9770 25 8 6.8760 -6.4894 3.8470 26 6 2.2808 -5.8581 0.1300 27 6 1.5344 -4.7046 0.0076 28 1 -0.4850 0.8400 -0.0004 29 1 3.9915 -2.4202 0.4649 30 1 5.3209 -4.4769 0.6921 31 1 4.1648 -7.7373 -0.0019 32 1 5.1540 -9.2889 -0.0217 33 1 6.6059 -11.2718 0.0678 34 1 8.5936 -11.2827 1.5175 35 1 9.1366 -9.3159 2.8914 36 1 1.8043 -6.8225 0.0336 37 1 0.4734 -4.7658 -0.1846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = 71.594848 kcal Electronic energy + Delta-G solvation = -26349.814730 eV Core-core repulsion = 22257.992834 eV Total energy + Delta-G solvation = -4091.821897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -41.10631 -40.10813 -39.23910 -38.24275 -36.93427 -34.31865 -34.17424 -32.68869 -32.24876 -32.03375 -30.08670 -28.27213 -26.84153 -25.27619 -24.45577 -22.91913 -22.27890 -21.43854 -20.30422 -19.19443 -18.44700 -18.00531 -17.90388 -17.34831 -16.81773 -16.15365 -15.87351 -15.38490 -15.19389 -14.81470 -14.69008 -14.33609 -14.22951 -14.09538 -13.59305 -13.39521 -12.95161 -12.93889 -12.48255 -12.36424 -12.07031 -11.67261 -11.63812 -11.25974 -11.12816 -11.04099 -10.74871 -10.53674 -10.44262 -10.09844 -9.92769 -9.82153 -9.58365 -9.17776 -8.91653 -8.09247 -7.01643 -6.81376 -3.66213 -0.60332 0.10917 0.47810 1.04733 2.05903 2.36374 2.50532 2.94521 3.03075 3.05793 3.10015 3.22761 3.80780 3.84419 4.00402 4.12448 4.31755 4.37203 4.47428 4.60437 4.89163 5.02212 5.15275 5.18254 5.26255 5.45185 5.57373 5.71579 5.83898 5.91856 6.17796 6.28797 6.41521 6.74067 6.81558 6.86753 7.02736 7.07898 7.30851 7.45273 7.64417 7.78735 7.90157 8.23533 8.61101 9.94024 10.40991 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.002715 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.387903 B =10309.973551 C =11379.448548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.400 4.400 8 H 0.089 0.911 9 O -0.107 6.107 10 C 0.103 3.897 11 C -0.236 4.236 12 C -0.045 4.045 13 C -0.003 4.003 14 N -0.636 5.636 15 C 0.522 3.478 16 O -0.490 6.490 17 C -0.073 4.073 18 C -0.083 4.083 19 C -0.083 4.083 20 C -0.092 4.092 21 C -0.072 4.072 22 C 0.055 3.945 23 N -0.040 5.040 24 O -0.193 6.193 25 O -0.060 6.060 26 C -0.082 4.082 27 C -0.183 4.183 28 H 0.284 0.716 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.397 0.603 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.110 0.890 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.574 -22.189 -1.141 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.106 0.894 9 O -0.003 6.003 10 C 0.046 3.954 11 C -0.256 4.256 12 C -0.065 4.065 13 C -0.096 4.096 14 N -0.280 5.280 15 C 0.307 3.693 16 O -0.365 6.365 17 C -0.078 4.078 18 C -0.102 4.102 19 C -0.101 4.101 20 C -0.111 4.111 21 C -0.091 4.091 22 C -0.029 4.029 23 N 0.453 4.547 24 O -0.377 6.377 25 O -0.282 6.282 26 C -0.102 4.102 27 C -0.204 4.204 28 H 0.096 0.904 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.233 0.767 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.128 0.872 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.285 -21.793 -1.145 24.568 hybrid contribution 0.511 0.679 0.018 0.850 sum 11.796 -21.114 -1.127 24.212 Atomic orbital electron populations 1.68918 1.07858 1.29665 1.38136 1.26876 0.95169 0.98784 0.96594 0.85651 0.79671 0.78856 0.79224 1.19491 1.19935 1.18409 1.20856 0.92998 0.82684 1.51292 0.89383 1.80351 1.37012 1.11933 1.71020 1.19393 0.90473 0.86949 0.98537 1.20686 0.94115 0.98246 1.12601 1.20540 0.98914 0.90537 0.96540 1.16966 0.90430 0.84595 1.17588 1.42892 1.28770 1.14416 1.41960 1.18040 0.82575 0.87039 0.81645 1.91023 1.70658 1.35622 1.39148 1.20013 0.93848 0.96816 0.97081 1.21451 1.00152 0.91235 0.97354 1.21531 0.93389 0.98293 0.96895 1.21365 0.97403 0.97688 0.94648 1.20962 0.98261 0.90763 0.99147 1.20227 0.98261 0.86777 0.97645 1.50174 1.02290 1.01467 1.00754 1.96271 1.02810 1.63942 1.74670 1.96339 1.39115 1.62733 1.29968 1.20183 0.91059 0.97158 1.01836 1.19737 0.99286 0.89413 1.11923 0.90424 0.85707 0.86823 0.76736 0.83165 0.83261 0.83071 0.83122 0.87199 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.40 13.66 55.99 0.76 -21.63 16 2 C 0.04 1.03 5.69 -15.21 -0.09 0.94 16 3 Si 0.94 19.75 29.64 -169.99 -5.04 14.71 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.40 -10.99 9.43 34.10 0.32 -10.67 16 8 H 0.09 2.32 5.12 -52.48 -0.27 2.05 16 9 O -0.11 -3.00 9.28 21.09 0.20 -2.80 16 10 C 0.10 2.54 6.59 -39.02 -0.26 2.28 16 11 C -0.24 -5.58 9.06 -39.41 -0.36 -5.94 16 12 C -0.05 -0.98 8.65 -39.41 -0.34 -1.32 16 13 C 0.00 -0.06 6.29 -83.67 -0.53 -0.59 16 14 N -0.64 -9.11 5.29 -10.69 -0.06 -9.16 16 15 C 0.52 8.25 7.48 -12.34 -0.09 8.16 16 16 O -0.49 -10.05 10.32 -19.50 -0.20 -10.25 16 17 C -0.07 -0.85 5.87 -104.97 -0.62 -1.46 16 18 C -0.08 -0.54 9.54 -39.18 -0.37 -0.92 16 19 C -0.08 -0.33 10.03 -39.64 -0.40 -0.73 16 20 C -0.09 -0.41 10.04 -39.49 -0.40 -0.81 16 21 C -0.07 -0.57 9.88 -39.64 -0.39 -0.96 16 22 C 0.06 0.68 6.37 -79.55 -0.51 0.18 16 23 N -0.04 -0.68 4.10 34.16 0.14 -0.54 16 24 O -0.19 -3.39 19.90 -31.57 -0.63 -4.02 16 25 O -0.06 -1.15 16.69 -40.09 -0.67 -1.82 16 26 C -0.08 -1.48 9.95 -39.41 -0.39 -1.87 16 27 C -0.18 -3.90 9.99 -39.41 -0.39 -4.29 16 28 H 0.28 6.99 8.26 -40.82 -0.34 6.65 16 29 H 0.13 2.98 5.78 -52.49 -0.30 2.67 16 30 H 0.11 2.49 6.38 -52.49 -0.34 2.15 16 31 H 0.40 3.82 6.86 -40.82 -0.28 3.54 16 32 H 0.15 0.57 6.41 -52.49 -0.34 0.23 16 33 H 0.15 0.09 8.06 -52.49 -0.42 -0.33 16 34 H 0.15 0.16 8.06 -52.48 -0.42 -0.26 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -35.37 334.15 -8.04 -43.40 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -2.77 Total: 5.08 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -4.81 Total: -18.00 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.85 Total: -31.33 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.30 Total: -18.89 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.04 Total: 14.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.37 -8.04 -43.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.996 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds