Wall clock time and date at job start Tue Mar 31 2020 14:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29380 * 1 3 3 Si 1.86808 * 120.00158 * 2 1 4 4 H 1.48499 * 109.47086 * 269.99842 * 3 2 1 5 5 H 1.48495 * 109.46782 * 30.00053 * 3 2 1 6 6 H 1.48502 * 109.47150 * 149.99877 * 3 2 1 7 7 C 1.46601 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99957 * 180.02562 * 7 2 1 9 9 O 1.22295 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.35694 * 116.99899 * 185.93858 * 9 7 2 11 11 C 1.38995 * 120.00083 * 6.05708 * 10 9 7 12 12 C 1.37940 * 120.00200 * 180.02562 * 11 10 9 13 13 C 1.38993 * 119.99798 * 359.97438 * 12 11 10 14 14 N 1.39784 * 120.00252 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99882 * 32.99230 * 14 13 12 16 16 O 1.21566 * 119.99979 * 5.38193 * 15 14 13 17 17 C 1.47809 * 120.00377 * 185.38621 * 15 14 13 18 18 C 1.39617 * 120.14265 * 357.30897 * 17 15 14 19 19 C 1.37936 * 119.85236 * 179.97438 * 18 17 15 20 20 C 1.38386 * 120.14187 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.29982 * 0.02562 * 20 19 18 22 22 C 1.37973 * 120.14457 * 0.02562 * 21 20 19 23 23 N 1.48018 * 120.07235 * 180.02562 * 22 21 20 24 24 O 1.31700 * 119.99977 * 52.82418 * 23 22 21 25 25 O 1.31699 * 120.00079 * 232.81581 * 23 22 21 26 26 C 1.39004 * 120.00052 * 0.26438 * 13 12 11 27 27 C 1.37942 * 119.99509 * 359.50105 * 26 13 12 28 28 H 0.97001 * 120.00141 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99414 * 359.97438 * 11 10 9 30 30 H 1.07994 * 120.00068 * 179.97438 * 12 11 10 31 31 H 0.96995 * 120.00431 * 212.99183 * 14 13 12 32 32 H 1.07999 * 120.07399 * 359.95613 * 18 17 15 33 33 H 1.07991 * 119.92426 * 179.72484 * 19 18 17 34 34 H 1.08006 * 119.84829 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.92944 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00097 * 179.72973 * 26 13 12 37 37 H 1.07997 * 119.99686 * 180.22443 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2279 1.6178 0.0000 4 1 2.4754 2.0464 -1.4001 5 1 1.4253 2.6526 0.7000 6 1 3.5254 1.4402 0.7001 7 6 2.0268 -1.2696 0.0006 8 1 3.1069 -1.2696 0.0010 9 8 1.4153 -2.3287 0.0006 10 6 2.1487 -3.4635 0.1262 11 6 3.5142 -3.3846 0.3733 12 6 4.2598 -4.5382 0.5005 13 6 3.6455 -5.7793 0.3821 14 7 4.4011 -6.9483 0.5104 15 6 5.4581 -6.9792 1.3461 16 8 5.6963 -6.0248 2.0604 17 6 6.3279 -8.1733 1.3940 18 6 6.0253 -9.2927 0.6164 19 6 6.8413 -10.4037 0.6654 20 6 7.9582 -10.4101 1.4825 21 6 8.2637 -9.3042 2.2555 22 6 7.4552 -8.1869 2.2167 23 7 7.7840 -7.0044 3.0440 24 8 8.9845 -6.4670 2.9770 25 8 6.8760 -6.4894 3.8470 26 6 2.2808 -5.8581 0.1300 27 6 1.5344 -4.7046 0.0076 28 1 -0.4850 0.8400 -0.0004 29 1 3.9915 -2.4202 0.4649 30 1 5.3209 -4.4769 0.6921 31 1 4.1648 -7.7373 -0.0019 32 1 5.1540 -9.2889 -0.0217 33 1 6.6059 -11.2718 0.0678 34 1 8.5936 -11.2827 1.5175 35 1 9.1366 -9.3159 2.8914 36 1 1.8043 -6.8225 0.0336 37 1 0.4734 -4.7658 -0.1846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023150404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:07 Heat of formation + Delta-G solvation = 48.017629 kcal Electronic energy + Delta-G solvation = -26350.837115 eV Core-core repulsion = 22257.992834 eV Total energy + Delta-G solvation = -4092.844281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21685 -41.80219 -40.47877 -39.26441 -38.55196 -35.77303 -35.47163 -34.51290 -32.99939 -32.84341 -31.85162 -29.83312 -27.94443 -27.04848 -25.41935 -24.10127 -23.63422 -22.82169 -21.63637 -20.51705 -19.96651 -19.37121 -19.17829 -18.66621 -18.19592 -17.21117 -16.79937 -16.49803 -16.36501 -16.17719 -16.10336 -15.96553 -15.66976 -15.36294 -14.98133 -14.72875 -14.25074 -14.01860 -13.83559 -13.52284 -13.35727 -13.34892 -12.85910 -12.75416 -12.59741 -12.44876 -12.27815 -12.12467 -11.89373 -11.35377 -11.24774 -10.96711 -10.68909 -10.65092 -10.51574 -9.83483 -8.74207 -8.68054 -5.69995 -1.76137 -0.64218 -0.22955 0.03475 0.49299 0.58274 1.32257 1.37945 1.46942 1.58303 1.79411 2.14213 2.30525 2.66422 3.13872 3.15705 3.22455 3.40728 3.55873 3.72311 3.85307 4.02196 4.07340 4.11901 4.36659 4.49723 4.58764 4.63391 4.66784 4.72685 4.93627 4.97906 5.00097 5.13672 5.32311 5.37606 5.38896 5.43928 5.55522 5.62716 5.93440 6.15858 6.33004 6.71875 7.00858 8.08825 8.58051 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.002715 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.387903 B =10309.973551 C =11379.448548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C -0.012 4.012 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.443 4.443 8 H 0.081 0.919 9 O -0.156 6.156 10 C 0.083 3.917 11 C -0.248 4.248 12 C -0.065 4.065 13 C 0.035 3.965 14 N -0.625 5.625 15 C 0.520 3.480 16 O -0.544 6.544 17 C -0.103 4.103 18 C -0.066 4.066 19 C -0.056 4.056 20 C -0.066 4.066 21 C -0.074 4.074 22 C 0.015 3.985 23 N -0.030 5.030 24 O -0.199 6.199 25 O -0.136 6.136 26 C -0.065 4.065 27 C -0.185 4.185 28 H 0.289 0.711 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.427 0.573 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.200 0.800 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.160 -28.722 -2.953 31.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.219 4.219 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.098 0.902 9 O -0.056 6.056 10 C 0.030 3.970 11 C -0.269 4.269 12 C -0.086 4.086 13 C -0.059 4.059 14 N -0.273 5.273 15 C 0.308 3.692 16 O -0.421 6.421 17 C -0.108 4.108 18 C -0.085 4.085 19 C -0.074 4.074 20 C -0.084 4.084 21 C -0.093 4.093 22 C -0.068 4.068 23 N 0.457 4.543 24 O -0.391 6.391 25 O -0.345 6.345 26 C -0.085 4.085 27 C -0.205 4.205 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.267 0.733 32 H 0.202 0.798 33 H 0.221 0.779 34 H 0.217 0.783 35 H 0.178 0.822 36 H 0.189 0.811 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.806 -28.407 -2.920 31.297 hybrid contribution 0.421 1.871 0.533 1.990 sum 13.227 -26.536 -2.388 29.746 Atomic orbital electron populations 1.68984 1.09290 1.30727 1.41425 1.27930 0.96174 1.01647 0.96103 0.84685 0.78020 0.74489 0.79723 1.18208 1.18466 1.18766 1.21022 0.92897 0.83653 1.54579 0.90196 1.80350 1.37470 1.12517 1.75235 1.20022 0.90878 0.87938 0.98156 1.20740 0.94393 0.98547 1.13194 1.20598 0.98628 0.91522 0.97817 1.17156 0.91192 0.85184 1.12331 1.42722 1.28152 1.13912 1.42471 1.18823 0.82326 0.87783 0.80270 1.91033 1.71772 1.38194 1.41141 1.19773 0.93666 0.96938 1.00378 1.21950 1.01212 0.89722 0.95597 1.22224 0.91383 0.98420 0.95343 1.22039 0.97449 0.97115 0.91780 1.21384 0.97755 0.90289 0.99853 1.20767 1.00799 0.86324 0.98951 1.50810 1.01287 1.02093 1.00086 1.96219 1.03715 1.64674 1.74452 1.96338 1.39474 1.65448 1.33203 1.20709 0.90203 0.98581 0.98982 1.20195 1.00541 0.89008 1.10733 0.89924 0.87468 0.87737 0.73267 0.79817 0.77851 0.78283 0.82201 0.81145 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.17 13.66 23.22 0.32 -50.85 16 2 C -0.01 -0.68 5.69 87.24 0.50 -0.18 16 3 Si 1.01 43.19 29.64 68.60 2.03 45.23 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.44 -26.55 9.43 70.00 0.66 -25.89 16 8 H 0.08 4.67 5.12 -2.91 -0.01 4.66 16 9 O -0.16 -9.41 9.28 52.56 0.49 -8.92 16 10 C 0.08 4.29 6.59 22.63 0.15 4.44 16 11 C -0.25 -12.53 9.06 22.38 0.20 -12.33 16 12 C -0.07 -2.91 8.65 22.38 0.19 -2.72 16 13 C 0.03 1.24 6.29 38.24 0.24 1.48 16 14 N -0.62 -15.81 5.29 -306.00 -1.62 -17.42 16 15 C 0.52 15.85 7.48 86.77 0.65 16.50 16 16 O -0.54 -23.24 10.32 19.79 0.20 -23.04 16 17 C -0.10 -2.10 5.87 -20.09 -0.12 -2.22 16 18 C -0.07 -0.43 9.54 22.53 0.21 -0.22 16 19 C -0.06 0.03 10.03 22.23 0.22 0.25 16 20 C -0.07 -0.09 10.04 22.33 0.22 0.13 16 21 C -0.07 -0.88 9.88 22.23 0.22 -0.66 16 22 C 0.02 0.36 6.37 36.63 0.23 0.59 16 23 N -0.03 -1.07 4.10 -45.85 -0.19 -1.25 16 24 O -0.20 -7.30 19.90 3.52 0.07 -7.23 16 25 O -0.14 -5.71 16.69 11.67 0.19 -5.52 16 26 C -0.07 -2.12 9.95 22.38 0.22 -1.90 16 27 C -0.18 -7.73 9.99 22.38 0.22 -7.51 16 28 H 0.29 15.20 8.26 -92.71 -0.77 14.44 16 29 H 0.11 5.69 5.78 -2.91 -0.02 5.67 16 30 H 0.10 4.85 6.38 -2.91 -0.02 4.83 16 31 H 0.43 5.70 6.86 -92.71 -0.64 5.07 16 32 H 0.18 -0.10 6.41 -2.91 -0.02 -0.12 16 33 H 0.20 -2.03 8.06 -2.92 -0.02 -2.05 16 34 H 0.20 -1.44 8.06 -2.91 -0.02 -1.46 16 35 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.13 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -93.74 334.15 6.07 -87.67 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.53 Total: 11.56 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.03 Total: -30.22 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.49 Total: -69.53 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: 0.96 Total: -44.71 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.23 kcal Total: -93.74 6.07 -87.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.692 kcal (2) G-P(sol) polarization free energy of solvation -93.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds