Wall clock time and date at job start Tue Mar 31 2020 14:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29493 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48497 * 109.47299 * 240.00512 * 3 2 1 5 5 H 1.48506 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47109 * 120.00089 * 3 2 1 7 7 C 1.46583 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00162 * 175.46537 * 7 2 1 9 9 C 1.39662 * 119.99779 * 355.47483 * 7 2 1 10 10 C 1.41654 * 120.19102 * 214.43247 * 9 7 2 11 11 C 1.35932 * 119.79393 * 180.02562 * 10 9 7 12 12 C 1.40002 * 120.19915 * 359.97438 * 11 10 9 13 13 N 1.38203 * 119.79893 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99768 * 35.44388 * 13 12 11 15 15 O 1.21537 * 120.00061 * 355.78275 * 14 13 12 16 16 C 1.47790 * 119.99898 * 175.78096 * 14 13 12 17 17 C 1.39640 * 120.12047 * 359.97438 * 16 14 13 18 18 C 1.37957 * 119.96372 * 180.02562 * 17 16 14 19 19 C 1.38303 * 120.20810 * 0.25346 * 18 17 16 20 20 N 1.48016 * 119.87522 * 179.72198 * 19 18 17 21 21 O 1.31698 * 120.00363 * 0.02562 * 20 19 18 22 22 O 1.31703 * 119.99443 * 180.02562 * 20 19 18 23 23 C 1.38826 * 120.24197 * 359.49329 * 19 18 17 24 24 O 1.35909 * 119.97770 * 180.25846 * 23 19 18 25 25 C 1.38475 * 120.03382 * 0.50552 * 23 19 18 26 26 C 1.40000 * 120.39695 * 0.26315 * 12 11 10 27 27 C 1.35926 * 120.20181 * 359.47475 * 26 12 11 28 28 H 0.97001 * 119.99613 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.10580 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.89915 * 179.97438 * 11 10 9 31 31 H 0.96992 * 119.99514 * 215.43433 * 13 12 11 32 32 H 1.07996 * 120.02143 * 0.02562 * 17 16 14 33 33 H 1.07999 * 119.89980 * 179.97438 * 18 17 16 34 34 H 0.96707 * 114.00014 * 270.24759 * 24 23 19 35 35 H 1.08005 * 120.10759 * 179.76894 * 25 23 19 36 36 H 1.07999 * 119.90017 * 179.74273 * 26 12 11 37 37 H 1.07995 * 120.10250 * 180.23842 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0827 1.6964 -1.2125 5 1 1.2640 2.7465 0.0006 6 1 3.0828 1.6963 1.2125 7 6 2.0278 -1.2694 -0.0006 8 1 3.1053 -1.2709 -0.0745 9 6 1.3328 -2.4771 0.0943 10 6 1.8987 -3.5718 0.7928 11 6 1.2153 -4.7436 0.8797 12 6 -0.0443 -4.8703 0.2820 13 7 -0.7316 -6.0657 0.3750 14 6 -0.6444 -6.8075 1.4968 15 8 0.0979 -6.4646 2.3960 16 6 -1.4515 -8.0380 1.6336 17 6 -2.3057 -8.4340 0.6023 18 6 -3.0580 -9.5829 0.7336 19 6 -2.9733 -10.3422 1.8864 20 7 -3.7884 -11.5702 2.0220 21 8 -4.5920 -11.9384 1.0458 22 8 -3.7100 -12.2947 3.1191 23 6 -2.1231 -9.9593 2.9149 24 8 -2.0402 -10.7123 4.0433 25 6 -1.3633 -8.8079 2.7938 26 6 -0.6092 -3.7952 -0.4146 27 6 0.0576 -2.6143 -0.5070 28 1 -0.4849 0.8401 0.0004 29 1 2.8705 -3.4760 1.2542 30 1 1.6454 -5.5794 1.4115 31 1 -1.2768 -6.3706 -0.3670 32 1 -2.3773 -7.8413 -0.2976 33 1 -3.7185 -9.8880 -0.0645 34 1 -2.6709 -10.4602 4.7317 35 1 -0.7043 -8.5070 3.5948 36 1 -1.5796 -3.9031 -0.8762 37 1 -0.3814 -1.7849 -1.0415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028437177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:03 Heat of formation + Delta-G solvation = 6.229031 kcal Electronic energy + Delta-G solvation = -25701.009624 eV Core-core repulsion = 21606.353253 eV Total energy + Delta-G solvation = -4094.656371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.22150 -39.87443 -38.55143 -37.60994 -37.00315 -34.72460 -34.58910 -33.28890 -32.31429 -30.86247 -29.72132 -29.21889 -27.32546 -24.99925 -23.52573 -23.41664 -21.78494 -21.03135 -20.25043 -19.38858 -18.53450 -18.35533 -17.66378 -17.53779 -16.74297 -16.38088 -15.82729 -15.53596 -15.34769 -14.99450 -14.82751 -14.64929 -14.07022 -13.77930 -13.31694 -12.85787 -12.82859 -12.56344 -12.26973 -11.84897 -11.82540 -11.59512 -11.57702 -11.31381 -11.23310 -11.15844 -10.91742 -10.88819 -10.32871 -10.03564 -9.73527 -9.67326 -9.61490 -9.41054 -9.11647 -7.70034 -7.10161 -6.94237 -4.43035 -1.14956 0.32746 0.44306 0.77292 2.17123 2.60666 2.92283 2.93459 2.99154 3.00621 3.04766 3.35626 3.41988 3.74164 3.79893 4.13436 4.28135 4.39851 4.41100 4.50787 4.99748 5.10977 5.18148 5.41297 5.48773 5.50200 5.76493 6.05868 6.30478 6.46023 6.57425 6.72546 6.75820 6.87156 7.00635 7.14236 7.50399 7.53505 7.71902 7.90850 8.05485 8.07565 8.36910 8.48577 8.64517 8.89507 9.89194 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.002109 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.744440 B =13271.978884 C =13695.668384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.070 3.930 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.462 4.462 8 H 0.082 0.918 9 C 0.107 3.893 10 C -0.223 4.223 11 C -0.068 4.068 12 C -0.037 4.037 13 N -0.622 5.622 14 C 0.525 3.475 15 O -0.514 6.514 16 C -0.040 4.040 17 C -0.105 4.105 18 C -0.041 4.041 19 C -0.028 4.028 20 N -0.016 5.016 21 O -0.184 6.184 22 O -0.147 6.147 23 C 0.183 3.817 24 O -0.469 6.469 25 C -0.098 4.098 26 C -0.104 4.104 27 C -0.162 4.162 28 H 0.288 0.712 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.395 0.605 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.408 0.592 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.712 -11.543 0.925 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.243 4.243 11 C -0.087 4.087 12 C -0.130 4.130 13 N -0.263 5.263 14 C 0.311 3.689 15 O -0.392 6.392 16 C -0.044 4.044 17 C -0.124 4.124 18 C -0.060 4.060 19 C -0.116 4.116 20 N 0.463 4.537 21 O -0.373 6.373 22 O -0.346 6.346 23 C 0.135 3.865 24 O -0.281 6.281 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.182 4.182 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.230 0.770 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.269 0.731 35 H 0.187 0.813 36 H 0.108 0.892 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.644 -10.872 1.184 12.307 hybrid contribution -0.729 0.393 0.010 0.828 sum -6.373 -10.479 1.193 12.323 Atomic orbital electron populations 1.69072 1.08611 1.30257 1.31364 1.27483 0.94652 1.01860 0.91386 0.86127 0.80027 0.78800 0.80366 1.18520 1.20150 1.18562 1.20576 0.94471 0.89197 1.44718 0.90017 1.17706 0.92143 0.91973 0.87707 1.20780 1.01550 0.95175 1.06819 1.20350 0.92376 0.97585 0.98438 1.17119 0.94885 0.85774 1.15213 1.42567 1.47312 1.21072 1.15389 1.17946 0.83940 0.83714 0.83327 1.90811 1.38251 1.70172 1.39928 1.20637 0.95051 0.95119 0.93609 1.21439 0.95432 0.95880 0.99649 1.20998 0.97317 0.92279 0.95373 1.21100 1.00435 0.89413 1.00665 1.50282 0.99609 1.01914 1.01942 1.96283 1.34411 1.76537 1.30023 1.96298 1.72544 1.51833 1.13884 1.18066 0.91614 0.89402 0.87418 1.84870 1.62083 1.56662 1.24521 1.21681 0.99331 0.91265 0.99474 1.20232 0.97839 0.93008 1.01288 1.21150 0.97763 0.95835 1.03473 0.90009 0.88630 0.87661 0.77038 0.82634 0.81754 0.73130 0.81309 0.89221 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.31 10.72 55.99 0.60 -17.71 16 2 C 0.07 1.63 5.59 -15.17 -0.08 1.54 16 3 Si 0.92 17.33 29.65 -169.99 -5.04 12.29 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.46 -11.54 9.25 -35.69 -0.33 -11.87 16 8 H 0.08 1.96 7.94 -52.49 -0.42 1.54 16 9 C 0.11 2.72 5.59 -106.76 -0.60 2.12 16 10 C -0.22 -5.37 9.76 -39.11 -0.38 -5.76 16 11 C -0.07 -1.52 8.59 -39.75 -0.34 -1.87 16 12 C -0.04 -0.76 6.30 -83.67 -0.53 -1.29 16 13 N -0.62 -9.54 5.21 -10.59 -0.06 -9.59 16 14 C 0.52 8.00 7.59 -12.35 -0.09 7.91 16 15 O -0.51 -9.92 13.74 5.33 0.07 -9.84 16 16 C -0.04 -0.44 5.87 -104.99 -0.62 -1.05 16 17 C -0.10 -0.83 9.54 -39.16 -0.37 -1.20 16 18 C -0.04 -0.33 9.56 -39.66 -0.38 -0.71 16 19 C -0.03 -0.29 6.90 -79.71 -0.55 -0.84 16 20 N -0.02 -0.21 4.98 34.08 0.17 -0.04 16 21 O -0.18 -2.45 19.14 -31.57 -0.60 -3.05 16 22 O -0.15 -1.97 17.86 -39.25 -0.70 -2.67 16 23 C 0.18 1.78 6.68 -39.28 -0.26 1.52 16 24 O -0.47 -4.22 11.39 -41.69 -0.47 -4.69 16 25 C -0.10 -1.00 9.53 -39.01 -0.37 -1.37 16 26 C -0.10 -2.18 9.89 -39.75 -0.39 -2.58 16 27 C -0.16 -3.91 8.68 -39.11 -0.34 -4.25 16 28 H 0.29 6.15 8.27 -40.82 -0.34 5.81 16 29 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.11 2.33 6.22 -52.49 -0.33 2.00 16 31 H 0.39 4.38 6.85 -40.82 -0.28 4.10 16 32 H 0.16 0.81 6.41 -52.49 -0.34 0.48 16 33 H 0.16 1.03 7.56 -52.49 -0.40 0.63 16 34 H 0.41 1.84 9.06 45.56 0.41 2.25 16 35 H 0.17 1.73 7.65 -52.48 -0.40 1.33 16 36 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -30.90 335.57 -8.66 -39.56 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -2.05 Total: 10.38 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -5.64 Total: -19.69 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.71 Total: -27.34 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.71 Total: -20.26 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.04 Total: 12.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.90 -8.66 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028437177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.793 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds