Wall clock time and date at job start Tue Mar 31 2020 14:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29493 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48497 * 109.47299 * 240.00512 * 3 2 1 5 5 H 1.48506 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47109 * 120.00089 * 3 2 1 7 7 C 1.46583 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00162 * 175.46537 * 7 2 1 9 9 C 1.39662 * 119.99779 * 355.47483 * 7 2 1 10 10 C 1.41654 * 120.19102 * 214.43247 * 9 7 2 11 11 C 1.35932 * 119.79393 * 180.02562 * 10 9 7 12 12 C 1.40002 * 120.19915 * 359.97438 * 11 10 9 13 13 N 1.38203 * 119.79893 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99768 * 35.44388 * 13 12 11 15 15 O 1.21537 * 120.00061 * 355.78275 * 14 13 12 16 16 C 1.47790 * 119.99898 * 175.78096 * 14 13 12 17 17 C 1.39640 * 120.12047 * 359.97438 * 16 14 13 18 18 C 1.37957 * 119.96372 * 180.02562 * 17 16 14 19 19 C 1.38303 * 120.20810 * 0.25346 * 18 17 16 20 20 N 1.48016 * 119.87522 * 179.72198 * 19 18 17 21 21 O 1.31698 * 120.00363 * 0.02562 * 20 19 18 22 22 O 1.31703 * 119.99443 * 180.02562 * 20 19 18 23 23 C 1.38826 * 120.24197 * 359.49329 * 19 18 17 24 24 O 1.35909 * 119.97770 * 180.25846 * 23 19 18 25 25 C 1.38475 * 120.03382 * 0.50552 * 23 19 18 26 26 C 1.40000 * 120.39695 * 0.26315 * 12 11 10 27 27 C 1.35926 * 120.20181 * 359.47475 * 26 12 11 28 28 H 0.97001 * 119.99613 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.10580 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.89915 * 179.97438 * 11 10 9 31 31 H 0.96992 * 119.99514 * 215.43433 * 13 12 11 32 32 H 1.07996 * 120.02143 * 0.02562 * 17 16 14 33 33 H 1.07999 * 119.89980 * 179.97438 * 18 17 16 34 34 H 0.96707 * 114.00014 * 270.24759 * 24 23 19 35 35 H 1.08005 * 120.10759 * 179.76894 * 25 23 19 36 36 H 1.07999 * 119.90017 * 179.74273 * 26 12 11 37 37 H 1.07995 * 120.10250 * 180.23842 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0827 1.6964 -1.2125 5 1 1.2640 2.7465 0.0006 6 1 3.0828 1.6963 1.2125 7 6 2.0278 -1.2694 -0.0006 8 1 3.1053 -1.2709 -0.0745 9 6 1.3328 -2.4771 0.0943 10 6 1.8987 -3.5718 0.7928 11 6 1.2153 -4.7436 0.8797 12 6 -0.0443 -4.8703 0.2820 13 7 -0.7316 -6.0657 0.3750 14 6 -0.6444 -6.8075 1.4968 15 8 0.0979 -6.4646 2.3960 16 6 -1.4515 -8.0380 1.6336 17 6 -2.3057 -8.4340 0.6023 18 6 -3.0580 -9.5829 0.7336 19 6 -2.9733 -10.3422 1.8864 20 7 -3.7884 -11.5702 2.0220 21 8 -4.5920 -11.9384 1.0458 22 8 -3.7100 -12.2947 3.1191 23 6 -2.1231 -9.9593 2.9149 24 8 -2.0402 -10.7123 4.0433 25 6 -1.3633 -8.8079 2.7938 26 6 -0.6092 -3.7952 -0.4146 27 6 0.0576 -2.6143 -0.5070 28 1 -0.4849 0.8401 0.0004 29 1 2.8705 -3.4760 1.2542 30 1 1.6454 -5.5794 1.4115 31 1 -1.2768 -6.3706 -0.3670 32 1 -2.3773 -7.8413 -0.2976 33 1 -3.7185 -9.8880 -0.0645 34 1 -2.6709 -10.4602 4.7317 35 1 -0.7043 -8.5070 3.5948 36 1 -1.5796 -3.9031 -0.8762 37 1 -0.3814 -1.7849 -1.0415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028437177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:02 Heat of formation + Delta-G solvation = -12.844813 kcal Electronic energy + Delta-G solvation = -25701.836728 eV Core-core repulsion = 21606.353253 eV Total energy + Delta-G solvation = -4095.483475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15089 -41.08897 -39.53118 -38.96594 -38.03526 -36.26521 -35.55159 -34.90993 -33.25529 -31.74243 -31.42548 -30.81458 -28.39994 -26.51346 -24.56943 -24.27664 -23.29745 -22.58066 -21.58740 -20.32130 -19.53056 -19.41321 -19.24125 -18.68110 -17.93257 -17.26540 -17.12510 -16.72806 -16.44331 -16.28396 -15.88458 -15.68584 -15.41178 -14.92996 -14.71233 -14.42886 -14.01799 -13.76871 -13.57944 -13.32903 -13.27598 -12.88316 -12.81581 -12.65131 -12.56389 -12.49366 -12.05849 -11.91805 -11.85466 -11.39196 -11.27893 -11.03034 -10.89034 -10.71728 -10.37066 -9.47951 -8.83132 -8.65013 -6.26468 -2.08139 -0.48871 -0.35256 -0.10172 0.79883 1.20507 1.36594 1.38815 1.49008 1.57511 1.94435 2.18175 2.26226 2.54708 2.68214 3.06434 3.30677 3.44092 3.54930 3.66517 3.79575 4.23661 4.34928 4.41716 4.43876 4.52739 4.61480 4.73902 4.92993 5.00834 5.01957 5.13703 5.27584 5.44462 5.47355 5.70357 5.89090 6.01751 6.11902 6.30282 6.34268 6.56601 6.65276 6.83261 7.02044 7.21732 8.20464 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.002109 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.744440 B =13271.978884 C =13695.668384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.077 3.923 10 C -0.245 4.245 11 C -0.081 4.081 12 C -0.016 4.016 13 N -0.617 5.617 14 C 0.533 3.467 15 O -0.557 6.557 16 C -0.045 4.045 17 C -0.082 4.082 18 C -0.025 4.025 19 C -0.036 4.036 20 N -0.014 5.014 21 O -0.191 6.191 22 O -0.173 6.173 23 C 0.190 3.810 24 O -0.479 6.479 25 C -0.098 4.098 26 C -0.101 4.101 27 C -0.183 4.183 28 H 0.297 0.703 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.420 0.580 32 H 0.191 0.809 33 H 0.191 0.809 34 H 0.426 0.574 35 H 0.164 0.836 36 H 0.128 0.872 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 -12.334 -0.038 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.074 3.926 10 C -0.264 4.264 11 C -0.101 4.101 12 C -0.109 4.109 13 N -0.261 5.261 14 C 0.321 3.679 15 O -0.437 6.437 16 C -0.049 4.049 17 C -0.101 4.101 18 C -0.044 4.044 19 C -0.123 4.123 20 N 0.461 4.539 21 O -0.381 6.381 22 O -0.367 6.367 23 C 0.142 3.858 24 O -0.295 6.295 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.203 4.203 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.259 0.741 32 H 0.208 0.792 33 H 0.208 0.792 34 H 0.290 0.710 35 H 0.181 0.819 36 H 0.146 0.854 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.419 -11.725 0.238 13.877 hybrid contribution -0.295 0.378 0.368 0.605 sum -7.715 -11.346 0.606 13.734 Atomic orbital electron populations 1.69096 1.09748 1.31594 1.31745 1.28285 0.95506 1.04545 0.90470 0.85091 0.78778 0.74618 0.80194 1.17952 1.18622 1.18789 1.20771 0.94509 0.90559 1.47643 0.90669 1.18014 0.93290 0.92564 0.88701 1.20896 1.01906 0.96034 1.07606 1.20480 0.93503 0.97088 0.99043 1.17115 0.93943 0.87332 1.12539 1.42391 1.47395 1.19580 1.16744 1.18482 0.82988 0.84199 0.82272 1.90804 1.40044 1.71416 1.41387 1.20226 0.95889 0.93664 0.95129 1.21700 0.93340 0.95534 0.99532 1.21304 0.96831 0.91333 0.94967 1.21406 1.00371 0.88864 1.01709 1.50531 0.99447 1.02329 1.01575 1.96273 1.34866 1.76911 1.30017 1.96303 1.73320 1.52788 1.14265 1.17970 0.91192 0.88976 0.87696 1.84828 1.62980 1.56701 1.24974 1.21610 0.99397 0.91448 0.99340 1.20517 0.98933 0.91864 1.00727 1.21157 0.97950 0.96903 1.04291 0.89114 0.89109 0.87609 0.74105 0.79175 0.79162 0.71002 0.81873 0.85440 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.68 10.72 23.22 0.25 -38.43 16 2 C 0.03 1.56 5.59 87.22 0.49 2.04 16 3 Si 0.99 35.89 29.65 68.60 2.03 37.92 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.51 -26.57 9.25 24.79 0.23 -26.35 16 8 H 0.08 3.84 7.94 -2.91 -0.02 3.81 16 9 C 0.08 4.05 5.59 -21.25 -0.12 3.93 16 10 C -0.24 -12.28 9.76 22.58 0.22 -12.06 16 11 C -0.08 -3.70 8.59 22.16 0.19 -3.51 16 12 C -0.02 -0.62 6.30 38.99 0.25 -0.37 16 13 N -0.62 -17.08 5.21 -305.71 -1.59 -18.67 16 14 C 0.53 15.07 7.59 86.77 0.66 15.72 16 15 O -0.56 -21.14 13.74 -3.83 -0.05 -21.19 16 16 C -0.05 -0.84 5.87 -20.10 -0.12 -0.96 16 17 C -0.08 -0.91 9.54 22.54 0.21 -0.69 16 18 C -0.03 -0.30 9.56 22.22 0.21 -0.09 16 19 C -0.04 -0.63 6.90 36.53 0.25 -0.37 16 20 N -0.01 -0.33 4.98 -46.09 -0.23 -0.56 16 21 O -0.19 -4.63 19.14 3.52 0.07 -4.57 16 22 O -0.17 -4.41 17.86 10.85 0.19 -4.22 16 23 C 0.19 3.27 6.68 22.47 0.15 3.42 16 24 O -0.48 -7.89 11.39 -71.27 -0.81 -8.71 16 25 C -0.10 -1.80 9.53 22.64 0.22 -1.59 16 26 C -0.10 -4.10 9.89 22.16 0.22 -3.88 16 27 C -0.18 -8.96 8.68 22.58 0.20 -8.77 16 28 H 0.30 12.76 8.27 -92.71 -0.77 12.00 16 29 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.11 4.75 6.22 -2.91 -0.02 4.73 16 31 H 0.42 7.37 6.85 -92.71 -0.64 6.73 16 32 H 0.19 0.78 6.41 -2.91 -0.02 0.76 16 33 H 0.19 1.35 7.56 -2.91 -0.02 1.33 16 34 H 0.43 3.24 9.06 -74.05 -0.67 2.57 16 35 H 0.16 3.21 7.65 -2.91 -0.02 3.19 16 36 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.12 5.88 6.16 -2.91 -0.02 5.86 16 Total: -1.00 -70.44 335.57 2.99 -67.45 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.12 Total: 24.47 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.26 Total: -33.50 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.57 Total: -57.66 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.60 Total: -38.68 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -70.44 2.99 -67.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028437177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.606 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds