Wall clock time and date at job start Tue Mar 31 2020 16:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46504 * 109.46883 * 240.00538 * 2 1 3 5 5 C 1.46500 * 120.00157 * 59.99987 * 4 2 1 6 6 C 1.50698 * 109.47329 * 84.99761 * 5 4 2 7 7 H 1.08002 * 119.99453 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00124 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00352 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99996 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47181 * 89.99928 * 10 8 6 12 12 H 1.48498 * 109.47250 * 210.00289 * 10 8 6 13 13 H 1.48500 * 109.47015 * 330.00126 * 10 8 6 14 14 S 1.65604 * 119.99495 * 239.99479 * 4 2 1 15 15 O 1.42103 * 106.39826 * 203.54152 * 14 4 2 16 16 O 1.42096 * 106.40403 * 336.46392 * 14 4 2 17 17 C 1.76198 * 107.21445 * 90.00421 * 14 4 2 18 18 C 1.38262 * 119.99890 * 269.72047 * 17 14 4 19 19 C 1.38214 * 119.99662 * 179.79043 * 18 17 14 20 20 C 1.38255 * 120.00487 * 0.46593 * 19 18 17 21 21 C 1.38217 * 119.99389 * 359.76719 * 20 19 18 22 22 N 1.48019 * 119.99749 * 179.97438 * 21 20 19 23 23 O 1.21797 * 120.00355 * 180.02562 * 22 21 20 24 24 O 1.21809 * 120.00012 * 0.02562 * 22 21 20 25 25 C 1.38212 * 120.00339 * 89.99999 * 17 14 4 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.08999 * 109.46508 * 204.99952 * 5 4 2 34 34 H 1.09000 * 109.46954 * 324.99588 * 5 4 2 35 35 H 0.96996 * 120.00754 * 180.02562 * 9 8 6 36 36 H 1.07995 * 119.99925 * 0.02562 * 18 17 14 37 37 H 1.08000 * 119.99611 * 180.25779 * 19 18 17 38 38 H 1.07994 * 120.00506 * 179.78901 * 20 19 18 39 39 H 1.08000 * 119.99904 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 1.6644 -0.1899 -2.5268 6 6 2.6337 0.8908 -2.9312 7 1 3.4332 1.1764 -2.2636 8 6 2.5000 1.5148 -4.1533 9 7 3.3462 2.4575 -4.5065 10 14 1.1176 1.0202 -5.3082 11 1 -0.0806 1.8526 -5.0312 12 1 1.5494 1.2263 -6.7140 13 1 0.7850 -0.4117 -5.0975 14 16 2.9705 -2.0369 -1.0444 15 8 3.7119 -2.1423 -2.2521 16 8 3.5795 -1.9553 0.2369 17 6 1.8962 -3.4327 -0.9966 18 6 1.4158 -3.8941 0.2150 19 6 0.5697 -4.9863 0.2520 20 6 0.2112 -5.6234 -0.9215 21 6 0.6953 -5.1649 -2.1322 22 7 0.3120 -5.8472 -3.3886 23 8 0.7389 -5.4436 -4.4555 24 8 -0.4303 -6.8124 -3.3556 25 6 1.5382 -4.0698 -2.1697 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.7104 -1.0072 -3.2465 34 1 0.6539 0.2181 -2.5045 35 1 3.2519 2.8968 -5.3661 36 1 1.6988 -3.3989 1.1320 37 1 0.1911 -5.3443 1.1981 38 1 -0.4473 -6.4788 -0.8922 39 1 1.9167 -3.7118 -3.1158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:32 Heat of formation + Delta-G solvation = -64.547707 kcal Electronic energy + Delta-G solvation = -26896.074936 eV Core-core repulsion = 22933.793407 eV Total energy + Delta-G solvation = -3962.281529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42666 -40.56330 -38.64858 -38.43526 -37.83202 -37.02517 -34.74906 -33.38262 -32.83559 -32.52923 -29.41842 -27.93399 -27.85894 -24.88192 -24.39446 -23.76753 -21.94117 -21.13097 -19.91069 -19.55783 -19.07963 -18.80568 -18.70934 -18.14820 -17.41893 -17.30258 -16.61023 -16.12274 -15.56598 -15.36432 -15.06592 -14.72096 -14.56092 -14.49055 -13.91420 -13.77720 -13.61754 -13.57577 -13.24054 -13.13054 -13.08602 -12.86177 -12.74218 -12.59192 -12.52529 -12.46793 -12.43805 -12.16989 -12.08266 -11.92862 -11.64701 -11.42084 -11.14563 -10.75515 -10.74073 -9.86286 -8.25929 -6.28027 -1.43457 -0.89816 -0.62996 0.07725 0.16665 1.32429 1.38666 1.44801 1.72683 2.07246 2.34131 2.64357 2.97157 3.07747 3.19938 3.41447 3.58174 3.67615 3.81599 3.84930 4.23155 4.28704 4.32534 4.38059 4.49101 4.62039 4.68758 4.78628 4.92009 4.94414 4.96779 5.01749 5.14339 5.23474 5.25926 5.50005 5.54184 5.66754 5.84908 6.31645 6.33102 6.75382 7.32744 8.90723 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.005593 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.392049 B = 5005.104114 C = 6335.180398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.975 5.975 5 C 0.230 3.770 6 C -0.522 4.522 7 H 0.044 0.956 8 C 0.014 3.986 9 N -0.945 5.945 10 Si 0.925 3.075 11 H -0.254 1.254 12 H -0.288 1.288 13 H -0.249 1.249 14 S 2.687 3.313 15 O -0.984 6.984 16 O -0.967 6.967 17 C -0.677 4.677 18 C 0.032 3.968 19 C -0.108 4.108 20 C 0.003 3.997 21 C -0.080 4.080 22 N 0.029 4.971 23 O -0.223 6.223 24 O -0.122 6.122 25 C 0.025 3.975 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.057 0.943 35 H 0.265 0.735 36 H 0.188 0.812 37 H 0.214 0.786 38 H 0.194 0.806 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -15.252 15.978 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 C -0.211 4.211 4 N -0.814 5.814 5 C 0.106 3.894 6 C -0.561 4.561 7 H 0.062 0.938 8 C -0.184 4.184 9 N -0.585 5.585 10 Si 0.748 3.252 11 H -0.179 1.179 12 H -0.214 1.214 13 H -0.172 1.172 14 S 2.779 3.221 15 O -0.975 6.975 16 O -0.957 6.957 17 C -0.765 4.765 18 C 0.013 3.987 19 C -0.126 4.126 20 C -0.016 4.016 21 C -0.164 4.164 22 N 0.546 4.454 23 O -0.423 6.423 24 O -0.351 6.351 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.205 0.795 37 H 0.231 0.769 38 H 0.211 0.789 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.068 -14.743 16.400 24.674 hybrid contribution -0.384 -0.059 -1.998 2.036 sum -11.452 -14.802 14.401 23.615 Atomic orbital electron populations 1.22170 0.93037 1.03071 1.03358 1.21151 0.96025 0.93949 0.85672 1.22091 0.99999 0.96418 1.02589 1.57271 1.70261 1.40735 1.13172 1.19242 0.96887 0.94258 0.79020 1.21618 1.13516 1.18657 1.02349 0.93815 1.25699 0.98576 0.94770 0.99349 1.70032 1.38997 1.26749 1.22771 0.86056 0.80205 0.80431 0.78495 1.17865 1.21371 1.17246 1.01916 0.74115 0.73315 0.72763 1.93585 1.69085 1.86726 1.48065 1.93517 1.73716 1.86954 1.41547 1.31185 1.22897 1.23062 0.99338 1.21961 0.87596 0.92838 0.96300 1.21996 0.96756 0.94227 0.99653 1.21909 0.93095 0.98087 0.88463 1.21367 1.09144 1.00782 0.85062 1.43843 0.98507 0.99901 1.03191 1.94648 1.59082 1.70115 1.18497 1.94454 1.30379 1.16395 1.93862 1.20693 0.89207 0.90236 0.99466 0.93117 0.91095 0.88864 0.87011 0.89622 0.95272 0.92789 0.95379 0.92546 0.92580 0.79482 0.76899 0.78930 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.16 71.98 0.66 -2.65 16 2 C 0.14 3.85 3.24 44.99 0.15 3.99 16 3 C -0.15 -5.01 8.20 71.98 0.59 -4.41 16 4 N -0.98 -34.95 2.73 -497.41 -1.36 -36.30 16 5 C 0.23 10.05 3.74 85.63 0.32 10.37 16 6 C -0.52 -28.74 8.08 25.60 0.21 -28.54 16 7 H 0.04 2.69 7.32 -2.91 -0.02 2.67 16 8 C 0.01 0.80 5.47 84.65 0.46 1.27 16 9 N -0.94 -58.74 13.96 21.44 0.30 -58.44 16 10 Si 0.92 43.01 27.47 68.60 1.88 44.90 16 11 H -0.25 -10.90 7.11 99.48 0.71 -10.20 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 14 S 2.69 94.04 5.64 -56.49 -0.32 93.72 16 15 O -0.98 -44.92 16.25 -128.00 -2.08 -47.00 16 16 O -0.97 -33.22 15.84 -128.00 -2.03 -35.25 16 17 C -0.68 -16.97 5.97 22.27 0.13 -16.83 16 18 C 0.03 0.47 9.52 22.27 0.21 0.68 16 19 C -0.11 -0.86 10.05 22.27 0.22 -0.64 16 20 C 0.00 0.04 9.56 22.27 0.21 0.25 16 21 C -0.08 -1.88 6.85 36.37 0.25 -1.63 16 22 N 0.03 0.83 4.45 -46.47 -0.21 0.62 16 23 O -0.22 -7.78 18.45 18.89 0.35 -7.43 16 24 O -0.12 -3.15 18.45 18.87 0.35 -2.80 16 25 C 0.02 0.69 9.03 22.27 0.20 0.89 16 26 H 0.05 1.26 6.69 -2.39 -0.02 1.24 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.11 2.55 6.91 -2.39 -0.02 2.54 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.03 1.09 7.93 -2.39 -0.02 1.07 16 32 H 0.05 2.11 6.65 -2.39 -0.02 2.10 16 33 H 0.03 1.27 6.66 -2.39 -0.02 1.25 16 34 H 0.06 2.24 5.88 -2.39 -0.01 2.22 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.19 1.70 7.61 -2.91 -0.02 1.68 16 37 H 0.21 -0.54 8.06 -2.91 -0.02 -0.57 16 38 H 0.19 1.24 7.61 -2.91 -0.02 1.21 16 39 H 0.14 4.74 7.17 -2.91 -0.02 4.72 16 Total: -1.00 -80.54 344.10 1.54 -79.00 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.03 Total: 6.24 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 3.62 Total: -37.25 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -1.26 Total: -94.13 kcal Atomic # 8 Polarization: -89.07 SS G_CDS: -3.41 Total: -92.49 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: 94.04 SS G_CDS: -0.32 Total: 93.72 kcal Total: -80.54 1.54 -79.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.456 kcal (2) G-P(sol) polarization free energy of solvation -80.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds