Wall clock time and date at job start Tue Mar 31 2020 14:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29366 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48504 * 109.47056 * 270.00456 * 3 2 1 5 5 H 1.48511 * 109.46710 * 29.99911 * 3 2 1 6 6 H 1.48493 * 109.47232 * 150.00183 * 3 2 1 7 7 C 1.46627 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00476 * 0.02562 * 7 2 1 9 9 O 1.22316 * 120.00142 * 179.97438 * 7 2 1 10 10 C 1.35717 * 117.00221 * 185.50821 * 9 7 2 11 11 C 1.38994 * 120.03678 * 186.30560 * 10 9 7 12 12 C 1.38113 * 120.07089 * 179.97438 * 11 10 9 13 13 C 1.38203 * 120.14749 * 359.78946 * 12 11 10 14 14 C 1.38951 * 120.06834 * 0.46679 * 13 12 11 15 15 N 1.39850 * 120.03802 * 179.79253 * 14 13 12 16 16 C 1.34771 * 119.99580 * 325.75887 * 15 14 13 17 17 O 1.21565 * 120.00300 * 354.80989 * 16 15 14 18 18 C 1.47815 * 119.99733 * 174.53357 * 16 15 14 19 19 C 1.39585 * 120.14805 * 359.72456 * 18 16 15 20 20 C 1.37952 * 119.85467 * 179.79246 * 19 18 16 21 21 C 1.38359 * 120.14352 * 0.45983 * 20 19 18 22 22 N 1.48014 * 119.85159 * 179.76658 * 21 20 19 23 23 O 1.31699 * 120.00027 * 180.02562 * 22 21 20 24 24 O 1.31702 * 120.00110 * 0.02562 * 22 21 20 25 25 C 1.38364 * 120.29748 * 359.79095 * 21 20 19 26 26 C 1.37949 * 120.14333 * 359.97438 * 25 21 20 27 27 C 1.38762 * 120.03679 * 6.28889 * 10 9 7 28 28 H 0.96996 * 120.00237 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.96006 * 359.97438 * 11 10 9 30 30 H 1.08007 * 119.92543 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.96744 * 180.25406 * 13 12 11 32 32 H 0.96997 * 119.99645 * 145.76451 * 15 14 13 33 33 H 1.08008 * 120.07002 * 359.97438 * 19 18 16 34 34 H 1.08001 * 119.92690 * 180.20792 * 20 19 18 35 35 H 1.08001 * 119.92632 * 179.97438 * 25 21 20 36 36 H 1.08005 * 120.07610 * 179.97438 * 26 25 21 37 37 H 1.07998 * 120.06906 * 0.04149 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2277 1.6177 0.0000 4 1 2.4751 2.0464 -1.4001 5 1 1.4250 2.6527 0.7001 6 1 3.5252 1.4401 0.7000 7 6 2.0268 -1.2698 0.0006 8 1 1.4869 -2.2052 0.0006 9 8 3.2499 -1.2699 0.0001 10 6 3.8661 -2.4736 -0.1154 11 6 5.2476 -2.5628 0.0083 12 6 5.8753 -3.7875 -0.1086 13 6 5.1321 -4.9286 -0.3445 14 6 3.7512 -4.8456 -0.4745 15 7 3.0003 -6.0000 -0.7175 16 6 3.5131 -6.9905 -1.4740 17 8 4.5878 -6.8423 -2.0225 18 6 2.7716 -8.2595 -1.6317 19 6 1.5427 -8.4373 -0.9940 20 6 0.8538 -9.6224 -1.1488 21 6 1.3828 -10.6371 -1.9266 22 7 0.6406 -11.9079 -2.0842 23 8 1.1416 -12.8759 -2.8234 24 8 -0.5210 -12.0708 -1.4851 25 6 2.6029 -10.4693 -2.5573 26 6 3.2998 -9.2874 -2.4146 27 6 3.1174 -3.6167 -0.3568 28 1 -0.4850 0.8400 0.0004 29 1 5.8308 -1.6734 0.1960 30 1 6.9489 -3.8541 -0.0117 31 1 5.6255 -5.8853 -0.4313 32 1 2.1104 -6.0878 -0.3416 33 1 1.1308 -7.6477 -0.3829 34 1 -0.0987 -9.7600 -0.6586 35 1 3.0104 -11.2655 -3.1627 36 1 4.2522 -9.1578 -2.9071 37 1 2.0439 -3.5500 -0.4537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042786507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:46 Heat of formation + Delta-G solvation = 59.689241 kcal Electronic energy + Delta-G solvation = -25568.861649 eV Core-core repulsion = 21476.523486 eV Total energy + Delta-G solvation = -4092.338162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -41.19930 -40.39041 -39.79918 -38.44798 -37.10386 -34.85720 -34.66514 -32.83277 -32.53393 -31.99555 -29.59669 -29.10428 -27.37143 -25.24514 -23.98246 -23.71003 -22.09030 -21.74857 -20.38893 -19.39899 -18.75794 -18.51845 -18.16276 -17.73422 -16.40849 -16.21494 -15.70040 -15.52641 -15.32529 -15.10668 -14.96544 -14.58424 -14.52726 -14.39147 -13.89439 -13.56120 -13.39210 -13.07760 -12.72768 -12.38370 -12.15280 -11.84626 -11.73749 -11.55760 -11.33114 -11.11361 -11.06575 -10.85587 -10.50671 -10.23570 -10.14337 -10.03721 -9.84874 -9.50644 -9.12684 -7.88735 -7.47069 -6.80878 -3.81471 -1.27306 0.29558 0.35770 0.65188 1.83170 2.20789 2.36861 2.78351 3.02427 3.07325 3.10940 3.19022 3.71463 3.84358 3.95974 4.02192 4.20942 4.28433 4.36656 4.57656 4.70613 4.91102 4.99993 5.05055 5.07917 5.33849 5.37845 5.61432 5.74325 5.91144 5.91936 6.11204 6.21323 6.31516 6.45081 6.82609 6.84638 7.14993 7.22750 7.32150 7.49818 7.63863 7.79877 7.97696 8.45101 9.80380 10.24913 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.002381 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.157360 B =11759.392750 C =13041.019310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.411 4.411 8 H 0.094 0.906 9 O -0.142 6.142 10 C 0.132 3.868 11 C -0.201 4.201 12 C -0.060 4.060 13 C -0.221 4.221 14 C 0.182 3.818 15 N -0.655 5.655 16 C 0.548 3.452 17 O -0.501 6.501 18 C -0.067 4.067 19 C -0.088 4.088 20 C -0.054 4.054 21 C 0.010 3.990 22 N -0.023 5.023 23 O -0.164 6.164 24 O -0.163 6.163 25 C -0.056 4.056 26 C -0.061 4.061 27 C -0.260 4.260 28 H 0.291 0.709 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.407 0.593 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 -15.123 -1.481 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.151 4.151 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.111 0.889 9 O -0.040 6.040 10 C 0.077 3.923 11 C -0.221 4.221 12 C -0.079 4.079 13 C -0.242 4.242 14 C 0.090 3.910 15 N -0.300 5.300 16 C 0.334 3.666 17 O -0.375 6.375 18 C -0.071 4.071 19 C -0.107 4.107 20 C -0.073 4.073 21 C -0.075 4.075 22 N 0.459 4.541 23 O -0.359 6.359 24 O -0.358 6.358 25 C -0.075 4.075 26 C -0.080 4.080 27 C -0.282 4.282 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.243 0.757 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.293 -14.065 -1.768 14.811 hybrid contribution -0.910 0.131 0.089 0.924 sum 3.383 -13.934 -1.679 14.437 Atomic orbital electron populations 1.68554 1.07622 1.30130 1.40043 1.26195 0.94663 0.98470 0.95730 0.86143 0.80760 0.80307 0.79549 1.19386 1.20312 1.17726 1.20165 0.80658 0.95564 1.52476 0.88859 1.80022 1.22327 1.27716 1.73966 1.18808 0.91403 0.84264 0.97799 1.20065 0.91617 0.97983 1.12432 1.20417 0.98348 0.91449 0.97693 1.20376 0.91910 0.98849 1.13067 1.17264 0.90818 0.84062 0.98847 1.43344 1.19678 1.16839 1.50107 1.18032 0.85891 0.83139 0.79514 1.90853 1.20924 1.80342 1.45429 1.20606 0.94756 0.95095 0.96633 1.21469 0.93395 0.97160 0.98684 1.21092 1.00977 0.90657 0.94555 1.20594 0.95441 0.84367 1.07143 1.50497 1.01842 1.03187 0.98611 1.96291 1.71183 1.32987 1.35469 1.96298 1.03562 1.88981 1.46963 1.21149 0.91068 0.98938 0.96343 1.21381 1.00658 0.89986 0.96016 1.20519 1.00826 0.90668 1.16162 0.89734 0.86718 0.86747 0.86707 0.75673 0.82659 0.81856 0.81892 0.81741 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.70 13.88 55.99 0.78 -20.92 16 2 C 0.06 1.58 5.69 -15.21 -0.09 1.50 16 3 Si 0.91 19.62 28.83 -169.99 -4.90 14.71 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.25 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.41 -10.70 9.94 34.12 0.34 -10.36 16 8 H 0.09 2.48 5.24 -52.48 -0.27 2.20 16 9 O -0.14 -3.52 8.23 21.00 0.17 -3.35 16 10 C 0.13 2.93 6.58 -39.11 -0.26 2.68 16 11 C -0.20 -3.92 9.99 -39.35 -0.39 -4.31 16 12 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 13 C -0.22 -3.93 8.65 -39.33 -0.34 -4.27 16 14 C 0.18 3.24 6.26 -83.74 -0.52 2.71 16 15 N -0.66 -8.79 5.28 -10.74 -0.06 -8.85 16 16 C 0.55 7.04 7.50 -12.35 -0.09 6.95 16 17 O -0.50 -8.06 14.09 5.31 0.07 -7.99 16 18 C -0.07 -0.61 5.87 -104.97 -0.62 -1.22 16 19 C -0.09 -0.61 9.54 -39.18 -0.37 -0.98 16 20 C -0.05 -0.39 9.56 -39.64 -0.38 -0.76 16 21 C 0.01 0.09 6.89 -79.86 -0.55 -0.46 16 22 N -0.02 -0.26 4.98 34.01 0.17 -0.09 16 23 O -0.16 -2.01 19.14 -31.57 -0.60 -2.61 16 24 O -0.16 -2.00 19.14 -31.57 -0.60 -2.61 16 25 C -0.06 -0.41 9.56 -39.64 -0.38 -0.79 16 26 C -0.06 -0.48 9.60 -39.18 -0.38 -0.86 16 27 C -0.26 -5.30 8.99 -39.19 -0.35 -5.65 16 28 H 0.29 6.87 8.26 -40.82 -0.34 6.53 16 29 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 30 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.11 1.97 6.47 -52.49 -0.34 1.63 16 32 H 0.41 4.12 6.87 -40.82 -0.28 3.84 16 33 H 0.16 0.73 6.42 -52.48 -0.34 0.39 16 34 H 0.16 0.94 7.56 -52.49 -0.40 0.54 16 35 H 0.16 0.94 7.56 -52.49 -0.40 0.55 16 36 H 0.17 1.18 7.65 -52.48 -0.40 0.78 16 37 H 0.13 2.71 5.79 -52.49 -0.30 2.41 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -30.58 337.49 -7.37 -37.96 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.71 Total: 5.95 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.78 Total: -17.30 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.89 Total: -29.86 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.96 Total: -16.56 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.90 Total: 14.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.58 -7.37 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.647 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds