Wall clock time and date at job start Tue Mar 31 2020 14:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29366 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48504 * 109.47056 * 270.00456 * 3 2 1 5 5 H 1.48511 * 109.46710 * 29.99911 * 3 2 1 6 6 H 1.48493 * 109.47232 * 150.00183 * 3 2 1 7 7 C 1.46627 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00476 * 0.02562 * 7 2 1 9 9 O 1.22316 * 120.00142 * 179.97438 * 7 2 1 10 10 C 1.35717 * 117.00221 * 185.50821 * 9 7 2 11 11 C 1.38994 * 120.03678 * 186.30560 * 10 9 7 12 12 C 1.38113 * 120.07089 * 179.97438 * 11 10 9 13 13 C 1.38203 * 120.14749 * 359.78946 * 12 11 10 14 14 C 1.38951 * 120.06834 * 0.46679 * 13 12 11 15 15 N 1.39850 * 120.03802 * 179.79253 * 14 13 12 16 16 C 1.34771 * 119.99580 * 325.75887 * 15 14 13 17 17 O 1.21565 * 120.00300 * 354.80989 * 16 15 14 18 18 C 1.47815 * 119.99733 * 174.53357 * 16 15 14 19 19 C 1.39585 * 120.14805 * 359.72456 * 18 16 15 20 20 C 1.37952 * 119.85467 * 179.79246 * 19 18 16 21 21 C 1.38359 * 120.14352 * 0.45983 * 20 19 18 22 22 N 1.48014 * 119.85159 * 179.76658 * 21 20 19 23 23 O 1.31699 * 120.00027 * 180.02562 * 22 21 20 24 24 O 1.31702 * 120.00110 * 0.02562 * 22 21 20 25 25 C 1.38364 * 120.29748 * 359.79095 * 21 20 19 26 26 C 1.37949 * 120.14333 * 359.97438 * 25 21 20 27 27 C 1.38762 * 120.03679 * 6.28889 * 10 9 7 28 28 H 0.96996 * 120.00237 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.96006 * 359.97438 * 11 10 9 30 30 H 1.08007 * 119.92543 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.96744 * 180.25406 * 13 12 11 32 32 H 0.96997 * 119.99645 * 145.76451 * 15 14 13 33 33 H 1.08008 * 120.07002 * 359.97438 * 19 18 16 34 34 H 1.08001 * 119.92690 * 180.20792 * 20 19 18 35 35 H 1.08001 * 119.92632 * 179.97438 * 25 21 20 36 36 H 1.08005 * 120.07610 * 179.97438 * 26 25 21 37 37 H 1.07998 * 120.06906 * 0.04149 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2277 1.6177 0.0000 4 1 2.4751 2.0464 -1.4001 5 1 1.4250 2.6527 0.7001 6 1 3.5252 1.4401 0.7000 7 6 2.0268 -1.2698 0.0006 8 1 1.4869 -2.2052 0.0006 9 8 3.2499 -1.2699 0.0001 10 6 3.8661 -2.4736 -0.1154 11 6 5.2476 -2.5628 0.0083 12 6 5.8753 -3.7875 -0.1086 13 6 5.1321 -4.9286 -0.3445 14 6 3.7512 -4.8456 -0.4745 15 7 3.0003 -6.0000 -0.7175 16 6 3.5131 -6.9905 -1.4740 17 8 4.5878 -6.8423 -2.0225 18 6 2.7716 -8.2595 -1.6317 19 6 1.5427 -8.4373 -0.9940 20 6 0.8538 -9.6224 -1.1488 21 6 1.3828 -10.6371 -1.9266 22 7 0.6406 -11.9079 -2.0842 23 8 1.1416 -12.8759 -2.8234 24 8 -0.5210 -12.0708 -1.4851 25 6 2.6029 -10.4693 -2.5573 26 6 3.2998 -9.2874 -2.4146 27 6 3.1174 -3.6167 -0.3568 28 1 -0.4850 0.8400 0.0004 29 1 5.8308 -1.6734 0.1960 30 1 6.9489 -3.8541 -0.0117 31 1 5.6255 -5.8853 -0.4313 32 1 2.1104 -6.0878 -0.3416 33 1 1.1308 -7.6477 -0.3829 34 1 -0.0987 -9.7600 -0.6586 35 1 3.0104 -11.2655 -3.1627 36 1 4.2522 -9.1578 -2.9071 37 1 2.0439 -3.5500 -0.4537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042786507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:45 Heat of formation + Delta-G solvation = 42.367942 kcal Electronic energy + Delta-G solvation = -25569.612757 eV Core-core repulsion = 21476.523486 eV Total energy + Delta-G solvation = -4093.089270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.27249 -41.83314 -40.85122 -39.37174 -38.49289 -35.95662 -35.71240 -34.61207 -33.38649 -32.64835 -31.13701 -30.53983 -28.30865 -26.98220 -24.99415 -24.36113 -23.32336 -23.20226 -21.64260 -20.43517 -20.04894 -19.65672 -19.30052 -18.98807 -17.36866 -17.22833 -16.97063 -16.75614 -16.41557 -16.28542 -16.25789 -16.11558 -15.65521 -15.48404 -15.05377 -14.65994 -14.44971 -14.29955 -14.18409 -14.01978 -13.36329 -12.83996 -12.79160 -12.71177 -12.59070 -12.44172 -12.42927 -12.10416 -11.99342 -11.52712 -11.34223 -11.15732 -10.90563 -10.88060 -10.62675 -9.43600 -9.01805 -8.62248 -5.73700 -2.12526 -0.50800 -0.23959 -0.12741 0.44472 0.63725 1.33122 1.35202 1.41181 1.50753 1.71555 2.23808 2.23925 2.66411 3.05533 3.10411 3.12117 3.20098 3.23703 3.54737 3.59571 3.96917 4.13965 4.30096 4.37500 4.43914 4.46113 4.51003 4.61299 4.67277 4.68946 4.77254 4.94980 5.11162 5.36904 5.39673 5.41722 5.44210 5.63277 5.72488 5.87765 6.18994 6.28846 6.62900 6.82293 8.02912 8.47681 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.002381 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.157360 B =11759.392750 C =13041.019310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.071 0.929 9 O -0.173 6.173 10 C 0.114 3.886 11 C -0.206 4.206 12 C -0.051 4.051 13 C -0.208 4.208 14 C 0.186 3.814 15 N -0.652 5.652 16 C 0.554 3.446 17 O -0.533 6.533 18 C -0.073 4.073 19 C -0.075 4.075 20 C -0.046 4.046 21 C 0.001 3.999 22 N -0.019 5.019 23 O -0.182 6.182 24 O -0.184 6.184 25 C -0.046 4.046 26 C -0.055 4.055 27 C -0.268 4.268 28 H 0.295 0.705 29 H 0.130 0.870 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.422 0.578 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -16.447 -1.490 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.511 4.511 8 H 0.088 0.912 9 O -0.075 6.075 10 C 0.062 3.938 11 C -0.226 4.226 12 C -0.070 4.070 13 C -0.229 4.229 14 C 0.092 3.908 15 N -0.298 5.298 16 C 0.342 3.658 17 O -0.410 6.410 18 C -0.076 4.076 19 C -0.094 4.094 20 C -0.065 4.065 21 C -0.085 4.085 22 N 0.458 4.542 23 O -0.375 6.375 24 O -0.377 6.377 25 C -0.065 4.065 26 C -0.074 4.074 27 C -0.290 4.290 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.262 0.738 33 H 0.196 0.804 34 H 0.197 0.803 35 H 0.197 0.803 36 H 0.190 0.810 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.238 -15.466 -1.772 16.771 hybrid contribution -1.230 0.135 0.045 1.239 sum 5.007 -15.331 -1.727 16.220 Atomic orbital electron populations 1.68612 1.08684 1.31033 1.43060 1.26923 0.95476 1.01162 0.95927 0.85274 0.79338 0.76927 0.79541 1.19084 1.18805 1.18162 1.20034 0.81270 0.95254 1.54545 0.91200 1.79993 1.21493 1.28579 1.77401 1.19458 0.92863 0.84225 0.97238 1.20420 0.90584 0.99710 1.11858 1.20905 1.00437 0.90177 0.95442 1.20791 0.91908 0.99755 1.10408 1.17306 0.91375 0.84570 0.97542 1.43313 1.20282 1.15744 1.50421 1.18465 0.85505 0.83632 0.78154 1.90833 1.22499 1.81049 1.46610 1.20334 0.95465 0.93571 0.98268 1.21649 0.92293 0.97498 0.97947 1.21292 1.01437 0.89997 0.93805 1.20883 0.95888 0.83664 1.08075 1.50782 1.01698 1.03745 0.97973 1.96285 1.71237 1.33937 1.36084 1.96294 1.04370 1.89376 1.47630 1.21286 0.90335 0.99072 0.95812 1.21448 1.00876 0.89570 0.95504 1.20622 1.00459 0.91610 1.16270 0.89286 0.85160 0.82670 0.85203 0.73817 0.80365 0.80267 0.80293 0.80953 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.95 13.88 23.22 0.32 -47.63 16 2 C 0.01 0.63 5.69 87.25 0.50 1.13 16 3 Si 0.97 41.44 28.83 68.60 1.98 43.41 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.43 -23.67 9.94 70.01 0.70 -22.97 16 8 H 0.07 3.98 5.24 -2.91 -0.02 3.97 16 9 O -0.17 -8.86 8.23 52.24 0.43 -8.43 16 10 C 0.11 5.07 6.58 22.58 0.15 5.22 16 11 C -0.21 -7.64 9.99 22.42 0.22 -7.41 16 12 C -0.05 -1.60 10.03 22.23 0.22 -1.37 16 13 C -0.21 -6.73 8.65 22.43 0.19 -6.53 16 14 C 0.19 6.26 6.26 38.16 0.24 6.50 16 15 N -0.65 -16.06 5.28 -306.17 -1.62 -17.68 16 16 C 0.55 12.78 7.50 86.78 0.65 13.43 16 17 O -0.53 -15.78 14.09 -3.92 -0.06 -15.84 16 18 C -0.07 -1.10 5.87 -20.09 -0.12 -1.22 16 19 C -0.07 -0.80 9.54 22.53 0.21 -0.59 16 20 C -0.05 -0.53 9.56 22.23 0.21 -0.32 16 21 C 0.00 0.01 6.89 36.44 0.25 0.26 16 22 N -0.02 -0.41 4.98 -46.32 -0.23 -0.65 16 23 O -0.18 -4.26 19.14 3.52 0.07 -4.19 16 24 O -0.18 -4.36 19.14 3.51 0.07 -4.29 16 25 C -0.05 -0.56 9.56 22.23 0.21 -0.34 16 26 C -0.05 -0.70 9.60 22.53 0.22 -0.49 16 27 C -0.27 -10.96 8.99 22.52 0.20 -10.76 16 28 H 0.30 14.56 8.26 -92.71 -0.77 13.80 16 29 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.13 3.94 6.47 -2.91 -0.02 3.92 16 32 H 0.42 7.64 6.87 -92.71 -0.64 7.00 16 33 H 0.18 1.05 6.42 -2.91 -0.02 1.03 16 34 H 0.18 1.55 7.56 -2.91 -0.02 1.52 16 35 H 0.18 1.60 7.56 -2.91 -0.02 1.58 16 36 H 0.17 1.99 7.65 -2.91 -0.02 1.97 16 37 H 0.12 5.13 5.79 -2.91 -0.02 5.11 16 Total: -1.00 -68.84 337.49 5.56 -63.28 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.53 Total: 17.47 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.06 Total: -25.47 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.52 Total: -65.95 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: 0.51 Total: -32.75 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.98 Total: 43.41 kcal Total: -68.84 5.56 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.649 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds