Wall clock time and date at job start Tue Mar 31 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29372 * 1 3 3 Si 1.86801 * 119.99518 * 2 1 4 4 H 1.48495 * 109.47154 * 269.99554 * 3 2 1 5 5 H 1.48501 * 109.47209 * 29.99871 * 3 2 1 6 6 H 1.48501 * 109.47029 * 149.99929 * 3 2 1 7 7 C 1.46620 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99816 * 180.02562 * 7 2 1 9 9 O 1.22311 * 120.00682 * 0.02562 * 7 2 1 10 10 C 1.35723 * 117.00417 * 185.96852 * 9 7 2 11 11 C 1.38979 * 120.03254 * 6.75413 * 10 9 7 12 12 C 1.38125 * 120.07054 * 179.97438 * 11 10 9 13 13 C 1.38208 * 120.13806 * 359.74027 * 12 11 10 14 14 C 1.38948 * 120.07401 * 0.51554 * 13 12 11 15 15 N 1.39843 * 120.03315 * 179.76496 * 14 13 12 16 16 C 1.34786 * 119.99580 * 207.76469 * 15 14 13 17 17 O 1.21560 * 119.99930 * 5.46078 * 16 15 14 18 18 C 1.47806 * 119.99717 * 185.45969 * 16 15 14 19 19 C 1.39612 * 120.14652 * 63.24151 * 18 16 15 20 20 C 1.37936 * 119.84967 * 180.02562 * 19 18 16 21 21 C 1.38381 * 120.14801 * 359.71961 * 20 19 18 22 22 C 1.38341 * 120.29639 * 0.56067 * 21 20 19 23 23 C 1.37977 * 120.14386 * 359.43803 * 22 21 20 24 24 N 1.48019 * 120.07563 * 180.25458 * 23 22 21 25 25 O 1.31694 * 119.99838 * 355.67863 * 24 23 22 26 26 O 1.31703 * 120.00009 * 175.67655 * 24 23 22 27 27 C 1.38761 * 120.03309 * 186.72796 * 10 9 7 28 28 H 0.96996 * 120.00246 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.96472 * 359.95147 * 11 10 9 30 30 H 1.07993 * 119.92950 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.95751 * 180.25378 * 13 12 11 32 32 H 0.96992 * 120.00509 * 27.77241 * 15 14 13 33 33 H 1.07995 * 120.07376 * 0.03915 * 19 18 16 34 34 H 1.07997 * 119.92475 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.85440 * 180.29481 * 21 20 19 36 36 H 1.08001 * 119.93254 * 179.72359 * 22 21 20 37 37 H 1.07997 * 120.06979 * 0.04887 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2276 1.6178 0.0000 4 1 2.4751 2.0465 -1.4000 5 1 1.4249 2.6527 0.7000 6 1 3.5251 1.4403 0.7001 7 6 2.0268 -1.2698 0.0006 8 1 3.1069 -1.2697 0.0010 9 8 1.4154 -2.3291 0.0006 10 6 2.1489 -3.4640 0.1268 11 6 3.5115 -3.3860 0.3890 12 6 4.2587 -4.5405 0.5181 13 6 3.6532 -5.7766 0.3926 14 6 2.2923 -5.8614 0.1253 15 7 1.6816 -7.1125 -0.0064 16 6 0.5840 -7.2488 -0.7768 17 8 0.1830 -6.3088 -1.4351 18 6 -0.1319 -8.5411 -0.8211 19 6 -0.7308 -9.0508 0.3325 20 6 -1.3969 -10.2577 0.2844 21 6 -1.4774 -10.9601 -0.9052 22 6 -0.8813 -10.4636 -2.0506 23 6 -0.2120 -9.2575 -2.0163 24 7 0.4204 -8.7249 -3.2440 25 8 0.4184 -9.4408 -4.3494 26 8 0.9850 -7.5351 -3.2310 27 6 1.5390 -4.7034 -0.0051 28 1 -0.4850 0.8400 0.0004 29 1 3.9868 -2.4217 0.4914 30 1 5.3172 -4.4772 0.7222 31 1 4.2395 -6.6775 0.4982 32 1 2.0476 -7.8821 0.4567 33 1 -0.6727 -8.5013 1.2604 34 1 -1.8602 -10.6533 1.1761 35 1 -2.0042 -11.9023 -0.9386 36 1 -0.9440 -11.0188 -2.9748 37 1 0.4804 -4.7666 -0.2091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042786527.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:20 Heat of formation + Delta-G solvation = 40.813033 kcal Electronic energy + Delta-G solvation = -26643.549163 eV Core-core repulsion = 22550.392467 eV Total energy + Delta-G solvation = -4093.156696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23870 -41.77123 -40.55492 -39.34289 -38.54131 -35.74699 -35.62463 -34.51748 -33.10762 -32.89615 -31.27579 -30.08998 -28.01395 -27.08746 -25.51719 -24.05153 -23.49027 -22.97245 -21.83406 -20.32763 -20.03653 -19.48600 -19.12825 -18.57015 -17.43441 -17.20306 -16.90782 -16.74766 -16.66918 -16.25577 -16.14781 -16.03590 -15.79528 -15.43365 -15.15449 -14.43174 -14.25325 -14.17927 -13.82456 -13.47403 -13.37611 -12.93786 -12.81951 -12.74095 -12.64349 -12.38230 -12.21867 -12.11974 -11.96920 -11.44005 -11.36919 -10.86380 -10.84387 -10.73845 -10.52613 -9.38341 -8.92080 -8.63674 -5.70038 -2.05631 -0.40221 -0.09069 -0.01574 0.44635 0.69192 1.32876 1.36711 1.46165 1.50508 1.76546 2.15603 2.17250 2.70137 3.06723 3.12638 3.23109 3.44984 3.57512 3.71460 3.83047 3.98302 4.17262 4.35110 4.39471 4.45330 4.58052 4.61306 4.71955 4.77192 4.91813 4.96810 5.01130 5.08936 5.36289 5.37458 5.42816 5.45641 5.59014 5.75032 5.97753 6.24277 6.29687 6.74879 6.98375 8.15632 8.64727 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002893 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.762613 B = 9676.001945 C = 9847.118964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C -0.022 4.022 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.444 4.444 8 H 0.091 0.909 9 O -0.169 6.169 10 C 0.101 3.899 11 C -0.271 4.271 12 C -0.040 4.040 13 C -0.229 4.229 14 C 0.191 3.809 15 N -0.641 5.641 16 C 0.541 3.459 17 O -0.522 6.522 18 C -0.080 4.080 19 C -0.083 4.083 20 C -0.030 4.030 21 C -0.080 4.080 22 C -0.045 4.045 23 C -0.005 4.005 24 N -0.024 5.024 25 O -0.144 6.144 26 O -0.242 6.242 27 C -0.223 4.223 28 H 0.287 0.713 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.429 0.571 33 H 0.172 0.828 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.177 0.823 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -27.785 6.146 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.227 4.227 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.173 1.173 7 C -0.522 4.522 8 H 0.108 0.892 9 O -0.069 6.069 10 C 0.048 3.952 11 C -0.291 4.291 12 C -0.058 4.058 13 C -0.250 4.250 14 C 0.097 3.903 15 N -0.288 5.288 16 C 0.328 3.672 17 O -0.397 6.397 18 C -0.085 4.085 19 C -0.102 4.102 20 C -0.048 4.048 21 C -0.098 4.098 22 C -0.064 4.064 23 C -0.092 4.092 24 N 0.449 4.551 25 O -0.351 6.351 26 O -0.416 6.416 27 C -0.245 4.245 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.268 0.732 33 H 0.189 0.811 34 H 0.222 0.778 35 H 0.223 0.777 36 H 0.195 0.805 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.376 -27.007 6.239 27.820 hybrid contribution 0.567 1.363 -0.831 1.694 sum -1.809 -25.644 5.408 26.271 Atomic orbital electron populations 1.69040 1.09784 1.30580 1.42245 1.28146 0.96212 1.02133 0.96175 0.84558 0.78285 0.73730 0.79477 1.18933 1.18714 1.17294 1.21182 0.93247 0.83337 1.54459 0.89162 1.80374 1.38066 1.12829 1.75657 1.19730 0.91764 0.86746 0.96924 1.21047 0.93469 1.00259 1.14323 1.20910 0.99905 0.90412 0.94594 1.20670 0.91317 0.99093 1.13910 1.17218 0.91919 0.83251 0.97960 1.43079 1.27832 1.09931 1.47931 1.18655 0.81376 0.88340 0.78866 1.90940 1.66045 1.41722 1.40946 1.19852 1.01049 0.93296 0.94277 1.21832 0.95396 0.97186 0.95745 1.22318 0.91013 0.90651 1.00794 1.22099 0.96290 1.02104 0.89283 1.21645 0.91262 0.89853 1.03688 1.20810 1.07385 0.99531 0.81478 1.51051 0.98066 1.01710 1.04224 1.96158 1.63230 1.56006 1.19723 1.96533 1.49829 1.01429 1.93794 1.19947 0.99896 0.90002 1.14699 0.90183 0.86216 0.82653 0.82639 0.73190 0.81064 0.77838 0.77700 0.80544 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.90 13.66 23.22 0.32 -54.58 16 2 C -0.02 -1.27 5.69 87.24 0.50 -0.78 16 3 Si 1.02 43.68 29.64 68.60 2.03 45.72 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.44 -27.46 9.42 70.01 0.66 -26.80 16 8 H 0.09 5.20 5.14 -2.91 -0.01 5.19 16 9 O -0.17 -11.04 9.28 52.19 0.48 -10.56 16 10 C 0.10 5.68 6.58 22.57 0.15 5.83 16 11 C -0.27 -12.89 9.06 22.42 0.20 -12.69 16 12 C -0.04 -1.47 10.03 22.24 0.22 -1.24 16 13 C -0.23 -7.83 9.95 22.43 0.22 -7.61 16 14 C 0.19 7.67 6.37 38.16 0.24 7.91 16 15 N -0.64 -19.89 5.35 -306.18 -1.64 -21.53 16 16 C 0.54 19.17 5.41 86.77 0.47 19.64 16 17 O -0.52 -25.59 12.24 18.99 0.23 -25.36 16 18 C -0.08 -1.87 5.63 -20.09 -0.11 -1.99 16 19 C -0.08 -0.91 9.79 22.53 0.22 -0.69 16 20 C -0.03 -0.05 10.03 22.23 0.22 0.18 16 21 C -0.08 -0.13 10.04 22.33 0.22 0.09 16 22 C -0.05 -0.51 9.57 22.23 0.21 -0.30 16 23 C 0.00 -0.12 6.90 36.64 0.25 0.14 16 24 N -0.02 -0.83 4.98 -45.84 -0.23 -1.05 16 25 O -0.14 -4.66 19.16 3.52 0.07 -4.59 16 26 O -0.24 -11.11 15.66 11.38 0.18 -10.93 16 27 C -0.22 -11.61 8.63 22.52 0.19 -11.41 16 28 H 0.29 15.96 8.26 -92.71 -0.77 15.19 16 29 H 0.12 5.69 5.80 -2.91 -0.02 5.67 16 30 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.43 8.56 8.78 -92.71 -0.81 7.75 16 33 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.20 -1.55 8.06 -2.91 -0.02 -1.57 16 35 H 0.21 -1.56 8.06 -2.91 -0.02 -1.58 16 36 H 0.18 1.45 7.58 -2.91 -0.02 1.42 16 37 H 0.10 5.75 6.02 -2.91 -0.02 5.74 16 Total: -1.00 -100.28 336.30 5.68 -94.60 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.35 Total: 18.01 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 3.88 Total: -29.73 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.55 Total: -77.16 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: 0.96 Total: -51.43 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.72 kcal Total: -100.28 5.68 -94.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786527.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.410 kcal (2) G-P(sol) polarization free energy of solvation -100.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds