Wall clock time and date at job start Tue Mar 31 2020 16:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46836 * 2 1 4 4 N 1.46505 * 109.46783 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99973 * 277.15002 * 4 3 2 6 6 H 1.08000 * 120.00110 * 39.73295 * 5 4 3 7 7 C 1.38815 * 120.00148 * 219.72803 * 5 4 3 8 8 N 1.31625 * 119.99769 * 23.71332 * 7 5 4 9 9 Si 1.86796 * 120.00187 * 203.71878 * 7 5 4 10 10 H 1.48500 * 109.47537 * 60.00039 * 9 7 5 11 11 H 1.48509 * 109.46944 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47119 * 299.99694 * 9 7 5 13 13 S 1.65601 * 119.99701 * 97.15259 * 4 3 2 14 14 O 1.42101 * 106.40217 * 173.66440 * 13 4 3 15 15 O 1.42098 * 106.40402 * 40.74358 * 13 4 3 16 16 C 1.76196 * 107.21938 * 287.20176 * 13 4 3 17 17 C 1.38265 * 120.00046 * 111.51993 * 16 13 4 18 18 C 1.38209 * 119.99993 * 179.97438 * 17 16 13 19 19 C 1.38253 * 120.00426 * 359.97438 * 18 17 16 20 20 C 1.38214 * 119.99915 * 359.96399 * 19 18 17 21 21 N 1.48019 * 120.00127 * 179.97438 * 20 19 18 22 22 O 1.21796 * 119.99818 * 354.25545 * 21 20 19 23 23 O 1.21800 * 119.99723 * 174.26713 * 21 20 19 24 24 C 1.38211 * 120.00387 * 291.43417 * 16 13 4 25 25 C 1.50702 * 120.00073 * 0.08901 * 24 16 13 26 26 H 1.09001 * 109.46933 * 59.99720 * 1 2 3 27 27 H 1.08996 * 109.46815 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46878 * 300.00178 * 1 2 3 29 29 H 1.09000 * 109.47368 * 240.00395 * 2 1 3 30 30 H 1.08996 * 109.47404 * 120.00274 * 2 1 3 31 31 H 1.08994 * 109.47138 * 60.00692 * 3 2 1 32 32 H 1.09001 * 109.47588 * 299.99879 * 3 2 1 33 33 H 0.96998 * 119.99802 * 179.97438 * 8 7 5 34 34 H 1.08004 * 119.99399 * 0.25973 * 17 16 13 35 35 H 1.08001 * 119.99574 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.00244 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.46659 * 262.56113 * 25 24 16 38 38 H 1.09006 * 109.47075 * 22.55199 * 25 24 16 39 39 H 1.08996 * 109.47566 * 142.55591 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.2951 1.1776 6 1 3.8359 0.5990 1.9240 7 6 5.3368 2.0402 1.4113 8 7 5.5231 3.1783 0.7769 9 14 6.6168 1.4277 2.6262 10 1 7.1308 0.1078 2.1804 11 1 7.7384 2.3987 2.6950 12 1 5.9986 1.2903 3.9694 13 16 4.3335 1.6209 -1.4221 14 8 5.7074 1.7291 -1.0755 15 8 3.6401 2.6111 -2.1689 16 6 4.1636 0.1128 -2.3172 17 6 3.4188 0.0802 -3.4817 18 6 3.2860 -1.1027 -4.1841 19 6 3.8982 -2.2532 -3.7228 20 6 4.6439 -2.2204 -2.5595 21 7 5.2990 -3.4523 -2.0652 22 8 5.0965 -4.5156 -2.6236 23 8 6.0403 -3.4025 -1.1001 24 6 4.7763 -1.0372 -1.8564 25 6 5.5881 -1.0018 -0.5873 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 6.3249 3.6992 0.9405 34 1 2.9446 0.9801 -3.8447 35 1 2.7038 -1.1282 -5.0934 36 1 3.7941 -3.1776 -4.2715 37 1 6.6443 -0.8949 -0.8345 38 1 5.2707 -0.1566 0.0236 39 1 5.4366 -1.9280 -0.0330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:06 Heat of formation + Delta-G solvation = -37.742502 kcal Electronic energy + Delta-G solvation = -27973.085573 eV Core-core repulsion = 24011.966404 eV Total energy + Delta-G solvation = -3961.119168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.99892 -39.18401 -36.52058 -36.37613 -35.86024 -34.24972 -33.19072 -32.74027 -31.71701 -31.10442 -27.50888 -26.21513 -25.61662 -23.80629 -22.80441 -21.85541 -20.90636 -19.28187 -18.83439 -18.37963 -17.36129 -16.94037 -16.27408 -15.94726 -15.77492 -15.27527 -15.01215 -14.47453 -14.10930 -13.62453 -13.57288 -13.30119 -13.18645 -12.42946 -12.23260 -12.16078 -12.05427 -11.91927 -11.78441 -11.61453 -11.44904 -11.20388 -11.09395 -10.91862 -10.90170 -10.54683 -10.48991 -10.47684 -10.45882 -10.29924 -9.85830 -9.74619 -9.49584 -9.01860 -8.86343 -7.93650 -6.81012 -4.29326 0.08453 0.93696 1.54215 1.63792 1.79948 3.15010 3.21839 3.24276 3.31204 3.99438 4.37843 4.55484 4.64475 4.73473 4.96361 5.01989 5.17575 5.32229 5.35980 5.43499 5.50707 5.61869 5.67826 5.89898 5.92196 6.02656 6.11456 6.16239 6.20077 6.24357 6.30093 6.37619 6.45865 6.51544 6.68294 6.74250 6.97311 7.15711 7.19639 7.92305 7.97942 8.62823 9.04052 10.27279 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.006907 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.379814 B = 4052.829286 C = 4912.793643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.128 3.872 4 N -0.811 5.811 5 C -0.257 4.257 6 H 0.093 0.907 7 C 0.054 3.946 8 N -0.772 5.772 9 Si 0.924 3.076 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.270 1.270 13 S 2.535 3.465 14 O -0.945 6.945 15 O -1.000 7.000 16 C -0.672 4.672 17 C 0.011 3.989 18 C -0.155 4.155 19 C -0.030 4.030 20 C -0.080 4.080 21 N 0.038 4.962 22 O -0.187 6.187 23 O -0.154 6.154 24 C 0.092 3.908 25 C -0.172 4.172 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.288 0.712 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -5.831 -3.152 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.001 3.999 4 N -0.634 5.634 5 C -0.407 4.407 6 H 0.110 0.890 7 C -0.165 4.165 8 N -0.410 5.410 9 Si 0.748 3.252 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.195 1.195 13 S 2.630 3.370 14 O -0.932 6.932 15 O -0.990 6.990 16 C -0.744 4.744 17 C -0.008 4.008 18 C -0.174 4.174 19 C -0.049 4.049 20 C -0.164 4.164 21 N 0.553 4.447 22 O -0.397 6.397 23 O -0.370 6.370 24 C 0.090 3.910 25 C -0.227 4.227 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.744 -4.499 -4.141 8.390 hybrid contribution 0.635 -1.402 -0.026 1.539 sum -5.109 -5.902 -4.166 8.848 Atomic orbital electron populations 1.21701 0.96062 1.01051 1.01757 1.22089 0.95350 0.99277 1.02214 1.21241 0.81112 0.94780 1.02760 1.53286 1.10584 1.81446 1.18044 1.19202 1.09319 1.19914 0.92296 0.88976 1.25677 0.99767 0.93174 0.97866 1.69735 1.26366 1.08577 1.36282 0.86017 0.79771 0.80091 0.79288 1.18262 1.20368 1.19540 1.12811 0.75254 0.75854 0.73061 1.93394 1.34625 1.84592 1.80614 1.93301 1.75297 1.57303 1.73068 1.33411 1.06140 1.24533 1.10276 1.21478 0.90150 0.98463 0.90727 1.21258 1.02412 0.91986 1.01750 1.21050 0.91460 1.00193 0.92209 1.21161 1.08328 0.85477 1.01445 1.43564 0.99198 1.02377 0.99562 1.94472 1.68031 1.17830 1.59345 1.94502 1.32530 1.92956 1.17053 1.19601 0.88842 0.88433 0.94107 1.22099 1.00097 1.07372 0.93163 0.92928 0.93306 0.92492 0.93053 0.91189 0.90057 0.91507 0.90076 0.83239 0.83837 0.83433 0.88653 0.86049 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.15 -2.31 6.21 -26.73 -0.17 -2.48 16 3 C 0.13 2.33 5.64 -4.04 -0.02 2.30 16 4 N -0.81 -17.63 2.65 -59.91 -0.16 -17.79 16 5 C -0.26 -5.74 6.99 -15.06 -0.11 -5.85 16 6 H 0.09 1.88 7.93 -52.49 -0.42 1.47 16 7 C 0.05 1.28 3.64 -17.43 -0.06 1.21 16 8 N -0.77 -19.88 11.13 55.49 0.62 -19.26 16 9 Si 0.92 18.72 29.61 -169.99 -5.03 13.68 16 10 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 13 S 2.53 59.24 4.33 -107.50 -0.47 58.77 16 14 O -0.95 -24.59 11.94 -57.17 -0.68 -25.28 16 15 O -1.00 -25.17 16.01 -57.17 -0.92 -26.08 16 16 C -0.67 -13.23 5.28 -39.58 -0.21 -13.44 16 17 C 0.01 0.18 9.55 -39.58 -0.38 -0.20 16 18 C -0.15 -2.09 10.05 -39.59 -0.40 -2.49 16 19 C -0.03 -0.44 9.56 -39.58 -0.38 -0.81 16 20 C -0.08 -1.42 6.83 -79.95 -0.55 -1.96 16 21 N 0.04 0.70 4.45 33.96 0.15 0.85 16 22 O -0.19 -3.33 18.46 -29.46 -0.54 -3.87 16 23 O -0.15 -2.93 15.36 -29.46 -0.45 -3.38 16 24 C 0.09 1.80 5.87 -104.62 -0.61 1.18 16 25 C -0.17 -3.45 7.56 36.01 0.27 -3.18 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.82 7.49 -51.93 -0.39 0.44 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.07 1.20 7.26 -51.93 -0.38 0.82 16 33 H 0.29 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.15 2.31 7.34 -52.48 -0.38 1.92 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.15 1.76 7.62 -52.49 -0.40 1.36 16 37 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 38 H 0.12 2.61 2.71 -51.93 -0.14 2.47 16 39 H 0.09 1.77 5.88 -51.93 -0.31 1.47 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -28.85 333.80 -9.20 -38.05 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.51 Total: 6.45 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -2.24 Total: -27.17 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.61 Total: -36.20 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -2.59 Total: -58.62 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: 59.24 SS G_CDS: -0.47 Total: 58.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.85 -9.20 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.312 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds