Wall clock time and date at job start Tue Mar 31 2020 16:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46836 * 2 1 4 4 N 1.46505 * 109.46783 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99973 * 277.15002 * 4 3 2 6 6 H 1.08000 * 120.00110 * 39.73295 * 5 4 3 7 7 C 1.38815 * 120.00148 * 219.72803 * 5 4 3 8 8 N 1.31625 * 119.99769 * 23.71332 * 7 5 4 9 9 Si 1.86796 * 120.00187 * 203.71878 * 7 5 4 10 10 H 1.48500 * 109.47537 * 60.00039 * 9 7 5 11 11 H 1.48509 * 109.46944 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47119 * 299.99694 * 9 7 5 13 13 S 1.65601 * 119.99701 * 97.15259 * 4 3 2 14 14 O 1.42101 * 106.40217 * 173.66440 * 13 4 3 15 15 O 1.42098 * 106.40402 * 40.74358 * 13 4 3 16 16 C 1.76196 * 107.21938 * 287.20176 * 13 4 3 17 17 C 1.38265 * 120.00046 * 111.51993 * 16 13 4 18 18 C 1.38209 * 119.99993 * 179.97438 * 17 16 13 19 19 C 1.38253 * 120.00426 * 359.97438 * 18 17 16 20 20 C 1.38214 * 119.99915 * 359.96399 * 19 18 17 21 21 N 1.48019 * 120.00127 * 179.97438 * 20 19 18 22 22 O 1.21796 * 119.99818 * 354.25545 * 21 20 19 23 23 O 1.21800 * 119.99723 * 174.26713 * 21 20 19 24 24 C 1.38211 * 120.00387 * 291.43417 * 16 13 4 25 25 C 1.50702 * 120.00073 * 0.08901 * 24 16 13 26 26 H 1.09001 * 109.46933 * 59.99720 * 1 2 3 27 27 H 1.08996 * 109.46815 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46878 * 300.00178 * 1 2 3 29 29 H 1.09000 * 109.47368 * 240.00395 * 2 1 3 30 30 H 1.08996 * 109.47404 * 120.00274 * 2 1 3 31 31 H 1.08994 * 109.47138 * 60.00692 * 3 2 1 32 32 H 1.09001 * 109.47588 * 299.99879 * 3 2 1 33 33 H 0.96998 * 119.99802 * 179.97438 * 8 7 5 34 34 H 1.08004 * 119.99399 * 0.25973 * 17 16 13 35 35 H 1.08001 * 119.99574 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.00244 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.46659 * 262.56113 * 25 24 16 38 38 H 1.09006 * 109.47075 * 22.55199 * 25 24 16 39 39 H 1.08996 * 109.47566 * 142.55591 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.2951 1.1776 6 1 3.8359 0.5990 1.9240 7 6 5.3368 2.0402 1.4113 8 7 5.5231 3.1783 0.7769 9 14 6.6168 1.4277 2.6262 10 1 7.1308 0.1078 2.1804 11 1 7.7384 2.3987 2.6950 12 1 5.9986 1.2903 3.9694 13 16 4.3335 1.6209 -1.4221 14 8 5.7074 1.7291 -1.0755 15 8 3.6401 2.6111 -2.1689 16 6 4.1636 0.1128 -2.3172 17 6 3.4188 0.0802 -3.4817 18 6 3.2860 -1.1027 -4.1841 19 6 3.8982 -2.2532 -3.7228 20 6 4.6439 -2.2204 -2.5595 21 7 5.2990 -3.4523 -2.0652 22 8 5.0965 -4.5156 -2.6236 23 8 6.0403 -3.4025 -1.1001 24 6 4.7763 -1.0372 -1.8564 25 6 5.5881 -1.0018 -0.5873 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 6.3249 3.6992 0.9405 34 1 2.9446 0.9801 -3.8447 35 1 2.7038 -1.1282 -5.0934 36 1 3.7941 -3.1776 -4.2715 37 1 6.6443 -0.8949 -0.8345 38 1 5.2707 -0.1566 0.0236 39 1 5.4366 -1.9280 -0.0330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:04 Heat of formation + Delta-G solvation = -54.381495 kcal Electronic energy + Delta-G solvation = -27973.807093 eV Core-core repulsion = 24011.966404 eV Total energy + Delta-G solvation = -3961.840689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.39901 -40.52611 -38.09111 -37.83507 -37.67040 -36.13811 -34.74551 -34.11439 -33.07711 -32.64046 -28.93379 -27.71916 -27.01344 -25.33534 -24.21714 -23.21657 -22.20658 -20.93084 -20.34768 -19.74905 -18.77025 -18.69916 -17.82229 -17.44052 -17.23844 -16.86016 -16.58674 -15.98006 -15.51212 -15.07212 -15.06078 -14.75336 -14.50479 -13.92540 -13.78286 -13.54490 -13.50957 -13.36160 -13.30981 -13.02610 -12.91555 -12.64197 -12.55085 -12.41223 -12.35804 -12.31001 -12.25107 -12.02886 -11.94186 -11.78423 -11.41711 -11.35358 -10.87008 -10.61052 -10.28854 -9.64979 -8.58163 -6.07978 -1.27567 -0.42669 0.00686 0.19924 0.30611 1.49734 1.58598 1.60677 1.99697 2.32407 2.75137 2.97331 3.27406 3.39155 3.46564 3.68822 3.79722 3.88257 4.11342 4.22672 4.27227 4.30994 4.39739 4.49069 4.61358 4.66315 4.71739 4.83140 4.87904 4.93409 5.07555 5.09029 5.18812 5.23564 5.28882 5.41055 5.48334 5.52057 5.63178 6.22517 6.50217 6.91516 7.31727 8.51061 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.006907 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.379814 B = 4052.829286 C = 4912.793643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.121 3.879 4 N -0.824 5.824 5 C -0.263 4.263 6 H 0.108 0.892 7 C 0.018 3.982 8 N -0.822 5.822 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.246 1.246 13 S 2.549 3.451 14 O -0.982 6.982 15 O -1.028 7.028 16 C -0.693 4.693 17 C 0.007 3.993 18 C -0.128 4.128 19 C -0.014 4.014 20 C -0.091 4.091 21 N 0.038 4.962 22 O -0.156 6.156 23 O -0.196 6.196 24 C 0.076 3.924 25 C -0.171 4.171 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.283 0.717 34 H 0.159 0.841 35 H 0.200 0.800 36 H 0.186 0.814 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -8.305 -4.882 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.005 4.005 4 N -0.647 5.647 5 C -0.411 4.411 6 H 0.125 0.875 7 C -0.196 4.196 8 N -0.461 5.461 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.169 1.169 13 S 2.649 3.351 14 O -0.969 6.969 15 O -1.018 7.018 16 C -0.771 4.771 17 C -0.012 4.012 18 C -0.147 4.147 19 C -0.032 4.032 20 C -0.176 4.176 21 N 0.551 4.449 22 O -0.375 6.375 23 O -0.401 6.401 24 C 0.074 3.926 25 C -0.227 4.227 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.177 0.823 35 H 0.217 0.783 36 H 0.203 0.797 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.847 -6.891 -5.722 11.908 hybrid contribution 1.161 -0.801 0.244 1.431 sum -6.687 -7.691 -5.479 11.571 Atomic orbital electron populations 1.21679 0.93377 1.02353 1.02670 1.21986 0.97565 0.96870 1.01665 1.21469 0.79244 0.96919 1.02879 1.53178 1.11921 1.82324 1.17313 1.19476 1.09187 1.19664 0.92809 0.87479 1.26426 1.01334 0.92933 0.98913 1.69819 1.26906 1.10288 1.39089 0.85405 0.77922 0.79102 0.78929 1.18493 1.21219 1.16949 1.11455 0.74320 0.75996 0.73310 1.93355 1.36401 1.85702 1.81451 1.93256 1.75612 1.59069 1.73846 1.32696 1.09153 1.22896 1.12322 1.21764 0.89224 1.00473 0.89755 1.21796 1.00843 0.89746 1.02313 1.21620 0.89057 1.02096 0.90468 1.21331 1.09179 0.84562 1.02507 1.43678 0.99104 1.02623 0.99469 1.94435 1.66747 1.17880 1.58441 1.94525 1.34209 1.93168 1.18238 1.19442 0.89568 0.89393 0.94237 1.21995 0.99610 1.07008 0.94083 0.92143 0.91760 0.91561 0.93719 0.91635 0.89539 0.91768 0.90716 0.82347 0.78342 0.79659 0.90064 0.87532 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.14 -4.19 6.21 30.60 0.19 -4.00 16 3 C 0.12 4.39 5.64 86.38 0.49 4.88 16 4 N -0.82 -36.60 2.65 -343.45 -0.91 -37.51 16 5 C -0.26 -12.04 6.99 84.03 0.59 -11.45 16 6 H 0.11 4.43 7.93 -2.91 -0.02 4.41 16 7 C 0.02 0.89 3.64 84.86 0.31 1.20 16 8 N -0.82 -44.50 11.13 21.65 0.24 -44.26 16 9 Si 0.96 39.30 29.61 68.60 2.03 41.33 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 13 S 2.55 122.27 4.33 -56.49 -0.24 122.03 16 14 O -0.98 -53.50 11.94 -128.00 -1.53 -55.03 16 15 O -1.03 -52.91 16.01 -128.00 -2.05 -54.96 16 16 C -0.69 -26.88 5.28 22.27 0.12 -26.76 16 17 C 0.01 0.21 9.55 22.27 0.21 0.42 16 18 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 19 C -0.01 -0.33 9.56 22.27 0.21 -0.11 16 20 C -0.09 -3.02 6.83 36.38 0.25 -2.77 16 21 N 0.04 1.31 4.45 -46.46 -0.21 1.10 16 22 O -0.16 -5.01 18.46 18.89 0.35 -4.66 16 23 O -0.20 -7.41 15.36 18.89 0.29 -7.12 16 24 C 0.08 2.91 5.87 -19.86 -0.12 2.80 16 25 C -0.17 -7.08 7.56 71.24 0.54 -6.54 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.37 7.49 -2.39 -0.02 1.35 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.98 8.10 -2.39 -0.02 2.96 16 32 H 0.06 2.32 7.26 -2.39 -0.02 2.30 16 33 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.16 4.50 7.34 -2.91 -0.02 4.48 16 35 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.19 3.14 7.62 -2.91 -0.02 3.12 16 37 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.11 4.75 2.71 -2.38 -0.01 4.74 16 39 H 0.10 3.92 5.88 -2.39 -0.01 3.91 16 Total: -1.00 -65.90 333.80 2.79 -63.12 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.09 Total: 23.32 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 3.73 Total: -47.35 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -0.88 Total: -80.68 kcal Atomic # 8 Polarization: -118.83 SS G_CDS: -2.94 Total: -121.77 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Atomic # 16 Polarization: 122.27 SS G_CDS: -0.24 Total: 122.03 kcal Total: -65.90 2.79 -63.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.734 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds