Wall clock time and date at job start Tue Mar 31 2020 16:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 N 1.46498 * 109.46992 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99769 * 274.99564 * 4 3 2 6 6 H 1.08004 * 120.00184 * 142.54938 * 5 4 3 7 7 C 1.38817 * 120.00251 * 322.55572 * 5 4 3 8 8 N 1.31615 * 119.99439 * 337.11613 * 7 5 4 9 9 Si 1.86797 * 120.00007 * 157.12212 * 7 5 4 10 10 H 1.48494 * 109.47387 * 59.99726 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46938 * 299.99467 * 9 7 5 13 13 S 1.65592 * 120.00176 * 95.00211 * 4 3 2 14 14 O 1.42096 * 106.40479 * 154.64617 * 13 4 3 15 15 O 1.42100 * 106.40599 * 21.72629 * 13 4 3 16 16 C 1.76203 * 107.21784 * 268.18579 * 13 4 3 17 17 C 1.38261 * 119.99961 * 270.02010 * 16 13 4 18 18 C 1.38210 * 119.99862 * 179.76493 * 17 16 13 19 19 C 1.38254 * 120.00274 * 0.49236 * 18 17 16 20 20 C 1.50694 * 120.00570 * 179.76751 * 19 18 17 21 21 C 1.38218 * 119.99502 * 359.48513 * 19 18 17 22 22 N 1.48018 * 119.99785 * 180.27676 * 21 19 18 23 23 O 1.21805 * 120.00292 * 173.75302 * 22 21 19 24 24 O 1.21801 * 120.00290 * 353.75296 * 22 21 19 25 25 C 1.38208 * 120.00130 * 90.00163 * 16 13 4 26 26 H 1.08989 * 109.47137 * 60.00037 * 1 2 3 27 27 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46644 * 299.99810 * 1 2 3 29 29 H 1.09005 * 109.46835 * 239.99834 * 2 1 3 30 30 H 1.09000 * 109.47547 * 120.00045 * 2 1 3 31 31 H 1.08993 * 109.47046 * 60.00088 * 3 2 1 32 32 H 1.09000 * 109.46922 * 300.00428 * 3 2 1 33 33 H 0.97005 * 119.99717 * 180.02562 * 8 7 5 34 34 H 1.07999 * 119.99558 * 0.02562 * 17 16 13 35 35 H 1.08005 * 120.00190 * 180.25292 * 18 17 16 36 36 H 1.09004 * 109.46943 * 263.12096 * 20 19 18 37 37 H 1.08999 * 109.47949 * 143.11896 * 20 19 18 38 38 H 1.09009 * 109.46949 * 23.11534 * 20 19 18 39 39 H 1.08003 * 119.99798 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3390 1.1805 6 1 5.1032 0.7640 1.2266 7 6 3.7111 1.9731 2.3187 8 7 2.9014 3.0046 2.2058 9 14 4.2158 1.3625 4.0104 10 1 5.6920 1.4470 4.1471 11 1 3.5727 2.2030 5.0521 12 1 3.7831 -0.0484 4.1767 13 16 4.3324 1.5677 -1.4295 14 8 5.6000 2.1257 -1.1117 15 8 3.4361 2.1561 -2.3621 16 6 4.6391 -0.0710 -2.0000 17 6 5.7959 -0.7286 -1.6245 18 6 6.0341 -2.0157 -2.0680 19 6 5.1205 -2.6420 -2.8954 20 6 5.3827 -4.0434 -3.3833 21 6 3.9639 -1.9847 -3.2705 22 7 2.9829 -2.6575 -4.1513 23 8 1.9134 -2.1256 -4.3899 24 8 3.2451 -3.7429 -4.6377 25 6 3.7231 -0.6991 -2.8225 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 2.5669 3.4479 3.0011 34 1 6.5113 -0.2379 -0.9811 35 1 6.9358 -2.5309 -1.7714 36 1 5.8226 -4.0049 -4.3799 37 1 4.4442 -4.5965 -3.4216 38 1 6.0711 -4.5427 -2.7013 39 1 2.8192 -0.1857 -3.1153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:38 Heat of formation + Delta-G solvation = -47.428955 kcal Electronic energy + Delta-G solvation = -27055.779303 eV Core-core repulsion = 23094.240098 eV Total energy + Delta-G solvation = -3961.539205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.25480 -39.53301 -36.67670 -36.43663 -36.18754 -34.87355 -33.33130 -32.75576 -32.00441 -31.03010 -28.07466 -26.14504 -25.96381 -23.84171 -22.86727 -22.37583 -20.80683 -19.66355 -18.67694 -18.42284 -17.61822 -17.23572 -16.67476 -16.46415 -15.94353 -15.46934 -14.84993 -14.48772 -14.26757 -14.13979 -14.02611 -13.51809 -12.99884 -12.98076 -12.69717 -12.46589 -12.21297 -11.96815 -11.82118 -11.63627 -11.39241 -11.27519 -11.16380 -11.12779 -11.00653 -10.90240 -10.79230 -10.70353 -10.55924 -10.48411 -10.21634 -9.88152 -9.74675 -9.41629 -9.14483 -7.88087 -6.45392 -4.14640 -0.16176 0.52787 1.20293 1.31613 1.42285 2.97900 3.11007 3.17283 3.18675 3.95220 4.16791 4.19901 4.30001 4.53846 4.60431 4.76867 4.85628 4.90229 5.15950 5.29376 5.32285 5.36694 5.55267 5.65095 5.72194 5.77238 5.83440 5.86707 5.92640 6.11697 6.24174 6.39777 6.50298 6.50356 6.62390 6.76487 7.17084 7.25280 7.59846 7.67660 8.22881 8.81836 9.20137 10.56777 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.004882 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.688358 B = 5733.950880 C = 6100.575805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.836 5.836 5 C -0.282 4.282 6 H 0.090 0.910 7 C 0.044 3.956 8 N -0.845 5.845 9 Si 0.917 3.083 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.273 1.273 13 S 2.612 3.388 14 O -0.964 6.964 15 O -0.990 6.990 16 C -0.657 4.657 17 C 0.034 3.966 18 C -0.146 4.146 19 C 0.018 3.982 20 C -0.136 4.136 21 C -0.074 4.074 22 N 0.037 4.963 23 O -0.162 6.162 24 O -0.166 6.166 25 C 0.046 3.954 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.272 0.728 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -10.753 -4.429 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.006 4.006 4 N -0.667 5.667 5 C -0.421 4.421 6 H 0.108 0.892 7 C -0.166 4.166 8 N -0.483 5.483 9 Si 0.743 3.257 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.198 1.198 13 S 2.708 3.292 14 O -0.954 6.954 15 O -0.980 6.980 16 C -0.738 4.738 17 C 0.015 3.985 18 C -0.165 4.165 19 C 0.016 3.984 20 C -0.192 4.192 21 C -0.158 4.158 22 N 0.553 4.447 23 O -0.377 6.377 24 O -0.379 6.379 25 C 0.026 3.974 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.272 -9.594 -4.557 11.114 hybrid contribution -0.009 -1.101 0.571 1.241 sum 3.263 -10.695 -3.986 11.871 Atomic orbital electron populations 1.21684 0.96281 1.00726 1.01787 1.21982 0.95068 0.99597 1.01241 1.21412 0.79764 0.94660 1.04721 1.52590 1.11520 1.85624 1.16931 1.19052 1.10262 1.28166 0.84605 0.89230 1.25457 0.97318 0.93632 1.00179 1.70001 1.31440 1.16258 1.30590 0.86164 0.79226 0.78952 0.81376 1.19518 1.20731 1.19802 1.06232 0.74539 0.73130 0.75260 1.93446 1.44226 1.73851 1.83833 1.93429 1.65000 1.73750 1.65784 1.31981 1.02066 1.29180 1.10541 1.21454 0.93460 0.92811 0.90745 1.21269 1.00137 0.95613 0.99463 1.20062 0.89853 0.96803 0.91666 1.21383 1.04993 0.90670 1.02155 1.21012 0.93674 0.96274 1.04825 1.43506 1.01344 1.00283 0.99576 1.94574 1.11119 1.67328 1.64682 1.94426 1.83458 1.07766 1.52237 1.20766 0.97945 0.90414 0.88302 0.92851 0.93544 0.92622 0.94158 0.91379 0.87090 0.91836 0.91823 0.82304 0.83055 0.89090 0.88107 0.90539 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.51 6.23 -26.73 -0.17 -2.67 16 3 C 0.12 2.57 5.29 -4.04 -0.02 2.55 16 4 N -0.84 -18.86 2.82 -59.91 -0.17 -19.03 16 5 C -0.28 -6.68 8.86 -15.06 -0.13 -6.81 16 6 H 0.09 1.99 7.93 -52.48 -0.42 1.58 16 7 C 0.04 1.05 4.96 -17.43 -0.09 0.96 16 8 N -0.84 -21.21 11.49 55.49 0.64 -20.57 16 9 Si 0.92 18.49 29.61 -169.99 -5.03 13.46 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 13 S 2.61 56.35 5.65 -107.50 -0.61 55.74 16 14 O -0.96 -23.00 16.53 -57.18 -0.94 -23.95 16 15 O -0.99 -22.96 15.80 -57.18 -0.90 -23.86 16 16 C -0.66 -11.44 5.97 -39.58 -0.24 -11.67 16 17 C 0.03 0.50 9.52 -39.58 -0.38 0.12 16 18 C -0.15 -1.72 9.67 -39.59 -0.38 -2.10 16 19 C 0.02 0.22 5.88 -104.63 -0.62 -0.39 16 20 C -0.14 -1.31 8.70 36.00 0.31 -0.99 16 21 C -0.07 -1.13 6.83 -79.95 -0.55 -1.67 16 22 N 0.04 0.58 4.45 33.96 0.15 0.73 16 23 O -0.16 -2.77 18.47 -29.46 -0.54 -3.31 16 24 O -0.17 -2.47 15.35 -29.46 -0.45 -2.93 16 25 C 0.05 0.77 8.03 -39.59 -0.32 0.45 16 26 H 0.05 0.78 8.14 -51.94 -0.42 0.36 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.69 7.10 -51.93 -0.37 0.32 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 2.55 5.55 -51.93 -0.29 2.26 16 32 H 0.06 1.34 6.90 -51.93 -0.36 0.98 16 33 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.16 2.15 7.62 -52.49 -0.40 1.75 16 35 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.06 5.84 -51.93 -0.30 0.76 16 38 H 0.08 0.55 8.04 -51.92 -0.42 0.13 16 39 H 0.16 2.77 7.19 -52.48 -0.38 2.39 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -29.23 344.60 -9.47 -38.71 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.60 Total: 3.93 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -2.20 Total: -24.11 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.62 Total: -38.87 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -2.84 Total: -54.05 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 56.35 SS G_CDS: -0.61 Total: 55.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.23 -9.47 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.721 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds