Wall clock time and date at job start Tue Mar 31 2020 16:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 N 1.46498 * 109.46992 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99769 * 274.99564 * 4 3 2 6 6 H 1.08004 * 120.00184 * 142.54938 * 5 4 3 7 7 C 1.38817 * 120.00251 * 322.55572 * 5 4 3 8 8 N 1.31615 * 119.99439 * 337.11613 * 7 5 4 9 9 Si 1.86797 * 120.00007 * 157.12212 * 7 5 4 10 10 H 1.48494 * 109.47387 * 59.99726 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46938 * 299.99467 * 9 7 5 13 13 S 1.65592 * 120.00176 * 95.00211 * 4 3 2 14 14 O 1.42096 * 106.40479 * 154.64617 * 13 4 3 15 15 O 1.42100 * 106.40599 * 21.72629 * 13 4 3 16 16 C 1.76203 * 107.21784 * 268.18579 * 13 4 3 17 17 C 1.38261 * 119.99961 * 270.02010 * 16 13 4 18 18 C 1.38210 * 119.99862 * 179.76493 * 17 16 13 19 19 C 1.38254 * 120.00274 * 0.49236 * 18 17 16 20 20 C 1.50694 * 120.00570 * 179.76751 * 19 18 17 21 21 C 1.38218 * 119.99502 * 359.48513 * 19 18 17 22 22 N 1.48018 * 119.99785 * 180.27676 * 21 19 18 23 23 O 1.21805 * 120.00292 * 173.75302 * 22 21 19 24 24 O 1.21801 * 120.00290 * 353.75296 * 22 21 19 25 25 C 1.38208 * 120.00130 * 90.00163 * 16 13 4 26 26 H 1.08989 * 109.47137 * 60.00037 * 1 2 3 27 27 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46644 * 299.99810 * 1 2 3 29 29 H 1.09005 * 109.46835 * 239.99834 * 2 1 3 30 30 H 1.09000 * 109.47547 * 120.00045 * 2 1 3 31 31 H 1.08993 * 109.47046 * 60.00088 * 3 2 1 32 32 H 1.09000 * 109.46922 * 300.00428 * 3 2 1 33 33 H 0.97005 * 119.99717 * 180.02562 * 8 7 5 34 34 H 1.07999 * 119.99558 * 0.02562 * 17 16 13 35 35 H 1.08005 * 120.00190 * 180.25292 * 18 17 16 36 36 H 1.09004 * 109.46943 * 263.12096 * 20 19 18 37 37 H 1.08999 * 109.47949 * 143.11896 * 20 19 18 38 38 H 1.09009 * 109.46949 * 23.11534 * 20 19 18 39 39 H 1.08003 * 119.99798 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3390 1.1805 6 1 5.1032 0.7640 1.2266 7 6 3.7111 1.9731 2.3187 8 7 2.9014 3.0046 2.2058 9 14 4.2158 1.3625 4.0104 10 1 5.6920 1.4470 4.1471 11 1 3.5727 2.2030 5.0521 12 1 3.7831 -0.0484 4.1767 13 16 4.3324 1.5677 -1.4295 14 8 5.6000 2.1257 -1.1117 15 8 3.4361 2.1561 -2.3621 16 6 4.6391 -0.0710 -2.0000 17 6 5.7959 -0.7286 -1.6245 18 6 6.0341 -2.0157 -2.0680 19 6 5.1205 -2.6420 -2.8954 20 6 5.3827 -4.0434 -3.3833 21 6 3.9639 -1.9847 -3.2705 22 7 2.9829 -2.6575 -4.1513 23 8 1.9134 -2.1256 -4.3899 24 8 3.2451 -3.7429 -4.6377 25 6 3.7231 -0.6991 -2.8225 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 2.5669 3.4479 3.0011 34 1 6.5113 -0.2379 -0.9811 35 1 6.9358 -2.5309 -1.7714 36 1 5.8226 -4.0049 -4.3799 37 1 4.4442 -4.5965 -3.4216 38 1 6.0711 -4.5427 -2.7013 39 1 2.8192 -0.1857 -3.1153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:36 Heat of formation + Delta-G solvation = -64.550002 kcal Electronic energy + Delta-G solvation = -27056.521727 eV Core-core repulsion = 23094.240098 eV Total energy + Delta-G solvation = -3962.281629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -43.47447 -40.67943 -38.21098 -37.92978 -37.88475 -36.69669 -34.47794 -34.30690 -33.15338 -32.72458 -29.10395 -27.66827 -27.25624 -25.52480 -23.99678 -23.54541 -22.32841 -21.04720 -20.10152 -19.89820 -18.93326 -18.80489 -18.21638 -18.04195 -17.21385 -16.75093 -16.49928 -16.10602 -15.57569 -15.31935 -15.15276 -15.09261 -14.52320 -13.92529 -13.74034 -13.57699 -13.47563 -13.46145 -13.40300 -13.28221 -13.08681 -12.95887 -12.62329 -12.59391 -12.46629 -12.37381 -12.22568 -12.15494 -12.08190 -11.85277 -11.73875 -11.44198 -10.97071 -10.86878 -10.51071 -9.64737 -8.23781 -5.99334 -1.33885 -0.70661 -0.40639 0.13683 0.20761 1.51297 1.53570 1.60935 1.82557 2.31259 2.59182 2.82590 3.08825 3.09619 3.18920 3.43127 3.60375 3.68097 3.97759 4.17284 4.21846 4.25661 4.31874 4.48276 4.54099 4.63491 4.65322 4.66870 4.90640 4.95508 4.98150 5.07038 5.09489 5.18997 5.26940 5.42047 5.46772 5.58708 5.85411 6.43620 6.44774 7.04265 7.40156 8.79160 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.004882 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.688358 B = 5733.950880 C = 6100.575805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.119 3.881 4 N -0.847 5.847 5 C -0.303 4.303 6 H 0.100 0.900 7 C 0.001 3.999 8 N -0.884 5.884 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.262 1.262 13 S 2.624 3.376 14 O -0.994 6.994 15 O -1.019 7.019 16 C -0.667 4.667 17 C 0.027 3.973 18 C -0.123 4.123 19 C 0.031 3.969 20 C -0.137 4.137 21 C -0.086 4.086 22 N 0.036 4.964 23 O -0.220 6.220 24 O -0.121 6.121 25 C 0.034 3.966 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.271 0.729 34 H 0.169 0.831 35 H 0.205 0.795 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -14.454 -4.299 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.008 4.008 4 N -0.678 5.678 5 C -0.440 4.440 6 H 0.118 0.882 7 C -0.205 4.205 8 N -0.524 5.524 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.187 1.187 13 S 2.725 3.275 14 O -0.984 6.984 15 O -1.009 7.009 16 C -0.754 4.754 17 C 0.008 3.992 18 C -0.141 4.141 19 C 0.030 3.970 20 C -0.192 4.192 21 C -0.170 4.170 22 N 0.551 4.449 23 O -0.420 6.420 24 O -0.347 6.347 25 C 0.013 3.987 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.186 0.814 35 H 0.222 0.778 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.183 -13.135 -4.378 14.784 hybrid contribution -0.495 -0.164 0.351 0.629 sum 4.688 -13.299 -4.027 14.664 Atomic orbital electron populations 1.21671 0.94213 1.02208 1.02048 1.21880 0.96855 0.97178 1.01140 1.21398 0.79581 0.96569 1.03220 1.52658 1.11977 1.86041 1.17124 1.19398 1.10656 1.28692 0.85260 0.88241 1.26275 0.97339 0.93497 1.03432 1.70112 1.33236 1.17668 1.31350 0.85230 0.78924 0.78686 0.77035 1.18964 1.21105 1.18659 1.05072 0.73513 0.74383 0.74527 1.93403 1.44871 1.75889 1.84255 1.93390 1.65682 1.75770 1.66029 1.31107 1.04370 1.27087 1.12869 1.21740 0.92353 0.94228 0.90874 1.21788 1.01130 0.93957 0.97261 1.20627 0.88156 0.98096 0.90139 1.21549 1.05639 0.88179 1.03866 1.21144 0.94619 0.95993 1.05258 1.43600 1.01352 1.00313 0.99643 1.94604 1.12224 1.68213 1.66947 1.94386 1.82916 1.07045 1.50378 1.20602 0.97584 0.91508 0.88988 0.92546 0.91381 0.92486 0.93742 0.91819 0.88941 0.92889 0.91912 0.81396 0.77823 0.87438 0.88873 0.86808 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.91 71.98 0.71 -3.68 16 2 C -0.13 -4.81 6.23 30.60 0.19 -4.62 16 3 C 0.12 5.29 5.29 86.38 0.46 5.74 16 4 N -0.85 -39.59 2.82 -343.45 -0.97 -40.55 16 5 C -0.30 -14.60 8.86 84.04 0.74 -13.85 16 6 H 0.10 4.43 7.93 -2.91 -0.02 4.41 16 7 C 0.00 0.03 4.96 84.86 0.42 0.45 16 8 N -0.88 -46.06 11.49 21.65 0.25 -45.81 16 9 Si 0.98 37.91 29.61 68.60 2.03 39.95 16 10 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 11 H -0.29 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 13 S 2.62 117.28 5.65 -56.49 -0.32 116.97 16 14 O -0.99 -48.76 16.53 -128.00 -2.12 -50.87 16 15 O -1.02 -49.89 15.80 -128.00 -2.02 -51.92 16 16 C -0.67 -23.10 5.97 22.27 0.13 -22.96 16 17 C 0.03 0.73 9.52 22.27 0.21 0.94 16 18 C -0.12 -2.28 9.67 22.27 0.22 -2.06 16 19 C 0.03 0.66 5.88 -19.87 -0.12 0.54 16 20 C -0.14 -1.82 8.70 71.23 0.62 -1.21 16 21 C -0.09 -2.47 6.83 36.37 0.25 -2.22 16 22 N 0.04 1.09 4.45 -46.46 -0.21 0.89 16 23 O -0.22 -7.66 18.47 18.88 0.35 -7.31 16 24 O -0.12 -3.24 15.35 18.89 0.29 -2.95 16 25 C 0.03 1.13 8.03 22.27 0.18 1.31 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.57 7.10 -2.38 -0.02 1.55 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.09 4.48 5.55 -2.39 -0.01 4.47 16 32 H 0.05 2.39 6.90 -2.39 -0.02 2.37 16 33 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 34 H 0.17 4.18 7.62 -2.91 -0.02 4.15 16 35 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.48 5.84 -2.39 -0.01 1.47 16 38 H 0.11 0.77 8.04 -2.38 -0.02 0.75 16 39 H 0.15 5.35 7.19 -2.91 -0.02 5.33 16 Total: -1.00 -66.77 344.60 2.39 -64.38 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 1.08 Total: 18.85 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 4.02 Total: -41.61 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -0.93 Total: -85.48 kcal Atomic # 8 Polarization: -109.55 SS G_CDS: -3.50 Total: -113.05 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: 117.28 SS G_CDS: -0.32 Total: 116.97 kcal Total: -66.77 2.39 -64.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.168 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds