Wall clock time and date at job start Tue Mar 31 2020 16:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47188 * 2 1 4 4 N 1.46504 * 109.46899 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00225 * 274.09261 * 4 3 2 6 6 H 1.08004 * 119.99517 * 148.64209 * 5 4 3 7 7 C 1.38812 * 119.99969 * 328.64589 * 5 4 3 8 8 N 1.31621 * 119.99918 * 334.64528 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 154.64344 * 7 5 4 10 10 H 1.48502 * 109.47257 * 89.99877 * 9 7 5 11 11 H 1.48496 * 109.47552 * 209.99974 * 9 7 5 12 12 H 1.48507 * 109.46926 * 330.00047 * 9 7 5 13 13 S 1.65601 * 119.99674 * 94.09838 * 4 3 2 14 14 O 1.42108 * 104.27839 * 153.92640 * 13 4 3 15 15 O 1.42094 * 104.27960 * 26.07140 * 13 4 3 16 16 C 1.81396 * 104.45025 * 269.99536 * 13 4 3 17 17 C 1.50694 * 109.47470 * 180.02562 * 16 13 4 18 18 C 1.38267 * 119.99946 * 264.00308 * 17 16 13 19 19 C 1.38216 * 119.99880 * 179.72398 * 18 17 16 20 20 C 1.38255 * 119.99881 * 0.27523 * 19 18 17 21 21 C 1.38207 * 120.00293 * 359.97438 * 20 19 18 22 22 C 1.38217 * 120.00479 * 84.19514 * 17 16 13 23 23 N 1.48016 * 119.99504 * 0.04325 * 22 17 16 24 24 O 1.21802 * 120.00146 * 174.12097 * 23 22 17 25 25 O 1.21802 * 120.00246 * 354.12472 * 23 22 17 26 26 H 1.09000 * 109.47175 * 300.00149 * 1 2 3 27 27 H 1.09003 * 109.47253 * 59.99858 * 1 2 3 28 28 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47175 * 239.99851 * 2 1 3 30 30 H 1.09003 * 109.47253 * 120.00142 * 2 1 3 31 31 H 1.08995 * 109.47433 * 60.00260 * 3 2 1 32 32 H 1.09001 * 109.47332 * 299.99705 * 3 2 1 33 33 H 0.97004 * 119.99646 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47137 * 60.00240 * 16 13 4 35 35 H 1.09001 * 109.47579 * 300.00569 * 16 13 4 36 36 H 1.07997 * 119.99837 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.99438 * 180.25748 * 19 18 17 38 38 H 1.08001 * 119.99431 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.00226 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.3579 1.1838 6 1 5.1509 0.8675 1.2175 7 6 3.6468 1.9025 2.3397 8 7 2.7829 2.8922 2.2583 9 14 4.1428 1.2307 4.0106 10 1 5.3257 1.9753 4.5122 11 1 3.0156 1.3924 4.9637 12 1 4.4815 -0.2097 3.8843 13 16 4.3335 1.5446 -1.4296 14 8 5.5800 2.1259 -1.0718 15 8 3.4379 2.2141 -2.3064 16 6 4.5601 -0.1795 -1.9457 17 6 5.3117 -0.2185 -3.2513 18 6 4.6202 -0.3188 -4.4444 19 6 5.3093 -0.3488 -5.6421 20 6 6.6903 -0.2843 -5.6468 21 6 7.3818 -0.1892 -4.4540 22 6 6.6925 -0.1580 -3.2559 23 7 7.4331 -0.0559 -1.9784 24 8 8.6499 -0.1105 -1.9737 25 8 6.8257 0.0826 -0.9317 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 2.4041 3.2730 3.0660 34 1 3.5859 -0.6518 -2.0727 35 1 5.1270 -0.7153 -1.1844 36 1 3.5414 -0.3687 -4.4406 37 1 4.7688 -0.4229 -6.5742 38 1 7.2287 -0.3081 -6.5828 39 1 8.4607 -0.1392 -4.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050101955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:49 Heat of formation + Delta-G solvation = -53.809776 kcal Electronic energy + Delta-G solvation = -27394.550249 eV Core-core repulsion = 23432.734351 eV Total energy + Delta-G solvation = -3961.815898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.31347 -40.56357 -38.08743 -37.87808 -37.66311 -36.68957 -34.42744 -34.18110 -32.99428 -32.63481 -29.23799 -27.56165 -27.18798 -25.41984 -23.85222 -23.26634 -22.13398 -20.46369 -20.03963 -19.60162 -19.14034 -18.64396 -18.23348 -17.65902 -17.07331 -16.94499 -16.38417 -16.20396 -15.80299 -15.50000 -15.15366 -14.77600 -14.46834 -14.28044 -14.14775 -13.52858 -13.34952 -13.29891 -13.21465 -13.03680 -12.93581 -12.66096 -12.61269 -12.58673 -12.39290 -12.17647 -12.12849 -12.10543 -12.05802 -11.83041 -11.69898 -11.34002 -10.90299 -10.68468 -10.21485 -9.52495 -8.12265 -5.82258 -1.33448 -0.62111 -0.03387 0.24941 0.39491 1.49103 1.51231 1.62841 2.08280 2.23013 2.56642 2.86957 3.02671 3.10941 3.27917 3.43631 3.69116 3.89618 3.92240 4.00489 4.11943 4.28506 4.37519 4.41089 4.56287 4.60741 4.73365 4.74957 4.94119 5.03045 5.07115 5.17761 5.21617 5.27568 5.38087 5.49792 5.60561 5.69339 6.02248 6.46523 6.59975 7.14044 7.51774 8.89982 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.005410 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.532852 B = 5174.824879 C = 6307.524404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.104 3.896 4 N -0.855 5.855 5 C -0.300 4.300 6 H 0.091 0.909 7 C -0.007 4.007 8 N -0.896 5.896 9 Si 0.969 3.031 10 H -0.284 1.284 11 H -0.276 1.276 12 H -0.259 1.259 13 S 2.563 3.437 14 O -0.991 6.991 15 O -1.013 7.013 16 C -0.588 4.588 17 C -0.046 4.046 18 C -0.117 4.117 19 C -0.045 4.045 20 C -0.099 4.099 21 C -0.060 4.060 22 C -0.074 4.074 23 N 0.026 4.974 24 O -0.167 6.167 25 O -0.186 6.186 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.266 0.734 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.173 0.827 37 H 0.199 0.801 38 H 0.200 0.800 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 -11.923 -17.373 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.023 4.023 4 N -0.686 5.686 5 C -0.433 4.433 6 H 0.109 0.891 7 C -0.209 4.209 8 N -0.537 5.537 9 Si 0.793 3.207 10 H -0.210 1.210 11 H -0.201 1.201 12 H -0.183 1.183 13 S 2.665 3.335 14 O -0.981 6.981 15 O -1.003 7.003 16 C -0.716 4.716 17 C -0.049 4.049 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.117 4.117 21 C -0.079 4.079 22 C -0.159 4.159 23 N 0.539 4.461 24 O -0.384 6.384 25 O -0.393 6.393 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.191 0.809 37 H 0.216 0.784 38 H 0.217 0.783 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.062 -11.037 -18.315 21.383 hybrid contribution 0.517 -0.304 1.959 2.049 sum 0.578 -11.341 -16.355 19.911 Atomic orbital electron populations 1.21665 0.94072 1.02412 1.01811 1.21947 0.96966 0.96811 1.01797 1.21559 0.79845 0.97287 1.03619 1.52705 1.12229 1.86424 1.17211 1.19322 1.05277 1.33818 0.84915 0.89145 1.25981 0.98085 0.94432 1.02448 1.70103 1.32243 1.21573 1.29791 0.85317 0.77594 0.79545 0.78236 1.20998 1.20080 1.18261 1.06653 0.73882 0.77924 0.75023 1.93450 1.47233 1.75128 1.82243 1.93394 1.65317 1.72175 1.69394 1.30025 1.10763 1.27102 1.03668 1.19269 0.90373 0.99209 0.96034 1.21770 1.02868 0.98966 0.90023 1.22297 0.94738 0.89972 0.99287 1.21927 0.94682 0.97147 0.97985 1.21566 1.03217 0.93803 0.89302 1.21487 0.92317 1.17746 0.84333 1.43970 1.01226 0.97307 1.03622 1.94403 0.96385 1.53621 1.93958 1.94593 1.69276 1.53405 1.22049 0.93457 0.92218 0.90693 0.91939 0.92226 0.88658 0.92993 0.92444 0.81173 0.82368 0.80917 0.78413 0.78289 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.91 71.98 0.71 -3.34 16 2 C -0.14 -4.84 6.24 30.59 0.19 -4.65 16 3 C 0.10 4.81 5.25 86.38 0.45 5.26 16 4 N -0.85 -43.68 2.79 -343.45 -0.96 -44.63 16 5 C -0.30 -16.61 8.81 84.03 0.74 -15.87 16 6 H 0.09 5.08 7.93 -2.91 -0.02 5.06 16 7 C -0.01 -0.37 4.95 84.86 0.42 0.05 16 8 N -0.90 -51.08 11.24 21.65 0.24 -50.84 16 9 Si 0.97 43.48 29.62 68.60 2.03 45.51 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 13 S 2.56 122.45 5.18 -56.49 -0.29 122.15 16 14 O -0.99 -55.83 14.62 -118.81 -1.74 -57.57 16 15 O -1.01 -50.13 16.54 -127.65 -2.11 -52.24 16 16 C -0.59 -20.49 5.48 71.23 0.39 -20.10 16 17 C -0.05 -1.37 5.14 -19.86 -0.10 -1.47 16 18 C -0.12 -2.30 9.68 22.27 0.22 -2.09 16 19 C -0.05 -0.51 10.05 22.27 0.22 -0.28 16 20 C -0.10 -1.11 10.05 22.27 0.22 -0.89 16 21 C -0.06 -1.24 9.56 22.27 0.21 -1.02 16 22 C -0.07 -2.34 6.83 36.37 0.25 -2.09 16 23 N 0.03 1.05 4.45 -46.47 -0.21 0.84 16 24 O -0.17 -6.45 18.46 18.88 0.35 -6.10 16 25 O -0.19 -8.62 12.50 25.92 0.32 -8.29 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.89 6.90 -2.39 -0.02 1.87 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 4.96 5.23 -2.39 -0.01 4.94 16 32 H 0.05 2.39 6.83 -2.39 -0.02 2.38 16 33 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.17 4.56 6.80 -2.39 -0.02 4.55 16 35 H 0.16 5.87 5.76 -2.39 -0.01 5.85 16 36 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.20 0.26 8.06 -2.91 -0.02 0.24 16 38 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 39 H 0.17 2.91 7.62 -2.91 -0.02 2.89 16 Total: -1.00 -83.00 340.80 2.66 -80.35 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.08 Total: 17.32 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 3.93 Total: -46.49 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -0.92 Total: -94.63 kcal Atomic # 8 Polarization: -121.03 SS G_CDS: -3.18 Total: -124.21 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 122.45 SS G_CDS: -0.29 Total: 122.15 kcal Total: -83.00 2.66 -80.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050101955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.540 kcal (2) G-P(sol) polarization free energy of solvation -83.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds