Wall clock time and date at job start Tue Mar 31 2020 15:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38255 * 120.00514 * 2 1 4 4 C 1.38215 * 120.00220 * 179.80747 * 3 2 1 5 5 N 1.48017 * 120.00240 * 180.23525 * 4 3 2 6 6 O 1.21799 * 120.00240 * 180.16498 * 5 4 3 7 7 O 1.21808 * 119.99823 * 0.16353 * 5 4 3 8 8 C 1.38254 * 119.99839 * 0.39650 * 4 3 2 9 9 C 1.38217 * 120.00279 * 359.85921 * 8 4 3 10 10 S 1.76196 * 120.00474 * 179.97438 * 9 8 4 11 11 O 1.42105 * 106.39722 * 356.38303 * 10 9 8 12 12 O 1.42093 * 106.40527 * 129.30093 * 10 9 8 13 13 N 1.65603 * 107.21753 * 242.84422 * 10 9 8 14 14 C 1.46502 * 119.99927 * 65.91034 * 13 10 9 15 15 H 1.08994 * 109.47259 * 24.77946 * 14 13 10 16 16 C 1.53001 * 109.46892 * 264.77728 * 14 13 10 17 17 C 1.50707 * 109.46883 * 144.78055 * 14 13 10 18 18 H 1.07992 * 119.99842 * 34.16762 * 17 14 13 19 19 C 1.37875 * 119.99855 * 214.16752 * 17 14 13 20 20 N 1.31514 * 120.00106 * 183.48959 * 19 17 14 21 21 Si 1.86800 * 119.99975 * 3.48924 * 19 17 14 22 22 H 1.48504 * 109.47067 * 93.22438 * 21 19 17 23 23 H 1.48500 * 109.47042 * 213.22447 * 21 19 17 24 24 H 1.48505 * 109.47028 * 333.22457 * 21 19 17 25 25 C 1.38223 * 119.99502 * 180.27234 * 2 1 3 26 26 C 1.50689 * 120.00219 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47568 * 269.73055 * 1 2 3 28 28 H 1.09002 * 109.46799 * 29.72662 * 1 2 3 29 29 H 1.08997 * 109.47692 * 149.72559 * 1 2 3 30 30 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 31 31 H 1.07993 * 120.00139 * 179.83174 * 8 4 3 32 32 H 0.96995 * 119.99475 * 245.90611 * 13 10 9 33 33 H 1.09002 * 109.47083 * 65.27374 * 16 14 13 34 34 H 1.08996 * 109.47038 * 185.27318 * 16 14 13 35 35 H 1.08998 * 109.47014 * 305.27322 * 16 14 13 36 36 H 0.96992 * 120.00253 * 180.02562 * 20 19 17 37 37 H 1.08996 * 109.47699 * 86.95027 * 26 25 2 38 38 H 1.08996 * 109.47343 * 206.95715 * 26 25 2 39 39 H 1.09010 * 109.47334 * 326.95148 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0040 5 7 4.3206 2.4790 0.0093 6 8 5.5386 2.4789 0.0098 7 8 3.7117 3.5339 0.0131 8 6 4.2717 -0.0002 -0.0002 9 6 3.5805 -1.1971 -0.0056 10 16 4.4614 -2.7231 -0.0117 11 8 5.8403 -2.3900 -0.0957 12 8 3.9138 -3.5067 1.0396 13 7 4.0817 -3.5026 -1.4226 14 6 4.4987 -2.9359 -2.7076 15 1 5.3717 -2.3006 -2.5584 16 6 3.3561 -2.1035 -3.2928 17 6 4.8461 -4.0515 -3.6595 18 1 4.3022 -4.9836 -3.6204 19 6 5.8584 -3.8820 -4.5801 20 7 6.1161 -4.8288 -5.4559 21 14 6.8637 -2.3076 -4.5837 22 1 8.0805 -2.4954 -3.7532 23 1 7.2608 -1.9770 -5.9759 24 1 6.0491 -1.1989 -4.0246 25 6 2.1979 -1.1971 -0.0057 26 6 1.4444 -2.5020 -0.0113 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 0.8925 -0.5096 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6584 2.1326 -0.0004 31 1 5.3516 -0.0003 0.0002 32 1 3.5833 -4.3343 -1.3981 33 1 3.1675 -1.2432 -2.6506 34 1 3.6308 -1.7594 -4.2898 35 1 2.4559 -2.7150 -3.3547 36 1 6.8284 -4.7097 -6.1033 37 1 1.2150 -2.7848 -1.0386 38 1 2.0561 -3.2768 0.4508 39 1 0.5169 -2.3885 0.5500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:26 Heat of formation + Delta-G solvation = -56.544369 kcal Electronic energy + Delta-G solvation = -27023.549483 eV Core-core repulsion = 23061.615004 eV Total energy + Delta-G solvation = -3961.934479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31131 -40.16257 -37.19329 -36.67394 -35.90393 -35.69118 -34.20914 -33.08406 -32.36843 -29.40337 -28.93737 -27.73788 -25.49290 -25.29381 -23.55318 -21.63343 -20.99859 -19.67553 -18.97153 -18.80237 -17.90491 -17.64585 -16.75795 -16.56913 -16.27619 -16.15283 -15.56777 -14.87584 -14.66465 -14.00752 -13.72118 -13.33298 -13.24291 -13.06810 -12.79609 -12.71706 -12.63824 -12.61760 -12.19499 -12.13830 -12.03517 -11.89098 -11.68444 -11.58515 -11.30837 -11.23725 -11.22619 -10.89768 -10.87733 -10.69950 -10.02689 -9.89994 -9.47284 -9.39806 -8.91079 -8.71537 -6.34666 -4.36638 -0.37947 0.24605 0.56690 1.09355 1.23865 2.68056 3.15728 3.24551 3.30147 3.31722 3.80722 3.93078 4.17193 4.21213 4.23036 4.37565 4.47432 4.69645 4.89791 4.96847 5.03187 5.12426 5.19214 5.26850 5.29124 5.39994 5.56146 5.64618 5.75918 5.81457 5.98459 6.04268 6.18816 6.27182 6.35262 6.88094 6.92130 7.28483 7.52473 7.66517 8.21873 8.67897 9.24807 10.76573 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.005454 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.590210 B = 5132.977094 C = 6027.020734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.108 4.108 3 C -0.010 4.010 4 C -0.070 4.070 5 N 0.032 4.968 6 O -0.154 6.154 7 O -0.164 6.164 8 C 0.042 3.958 9 C -0.671 4.671 10 S 2.677 3.323 11 O -0.950 6.950 12 O -0.966 6.966 13 N -1.084 6.084 14 C 0.232 3.768 15 H 0.053 0.947 16 C -0.158 4.158 17 C -0.514 4.514 18 H 0.084 0.916 19 C 0.081 3.919 20 N -0.881 5.881 21 Si 0.865 3.135 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.261 1.261 25 C 0.076 3.924 26 C -0.179 4.179 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.171 0.829 32 H 0.415 0.585 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.270 0.730 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 8.416 10.212 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.110 4.110 3 C -0.029 4.029 4 C -0.154 4.154 5 N 0.552 4.448 6 O -0.371 6.371 7 O -0.379 6.379 8 C 0.022 3.978 9 C -0.754 4.754 10 S 2.763 3.237 11 O -0.940 6.940 12 O -0.955 6.955 13 N -0.847 5.847 14 C 0.128 3.872 15 H 0.071 0.929 16 C -0.217 4.217 17 C -0.555 4.555 18 H 0.102 0.898 19 C -0.125 4.125 20 N -0.517 5.517 21 Si 0.691 3.309 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.186 1.186 25 C 0.074 3.926 26 C -0.235 4.235 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.251 0.749 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.171 7.687 10.735 17.957 hybrid contribution 0.201 1.544 -0.440 1.618 sum -11.970 9.232 10.295 18.289 Atomic orbital electron populations 1.20880 0.88693 1.04241 1.03372 1.19888 0.97486 0.91008 1.02608 1.21095 0.90935 1.00334 0.90498 1.21084 0.92702 0.83895 1.17686 1.43511 1.01330 1.02546 0.97462 1.94586 0.95171 1.94163 1.53166 1.94511 1.70080 1.19590 1.53683 1.20802 1.02479 0.88593 0.85969 1.31505 1.06021 1.20843 1.17019 1.02791 0.74139 0.73113 0.73641 1.93593 1.29714 1.84223 1.86493 1.93513 1.79615 1.67414 1.55005 1.55841 1.72843 1.35029 1.20999 1.19128 0.92861 0.94683 0.80561 0.92918 1.22453 1.00619 0.97921 1.00751 1.20933 1.18972 1.00774 1.14835 0.89770 1.24974 0.96156 0.96455 0.94886 1.69859 1.30659 1.33096 1.18068 0.87034 0.81894 0.84024 0.77990 1.19112 1.20713 1.18602 1.19861 0.91335 0.96597 0.84775 1.21784 1.02502 0.93793 1.05380 0.90150 0.90574 0.89957 0.82494 0.81162 0.74921 0.96165 0.92001 0.92587 0.92007 0.87654 0.87388 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.21 36.00 0.33 -0.39 16 2 C -0.11 -1.08 5.88 -104.62 -0.62 -1.69 16 3 C -0.01 -0.10 9.21 -39.58 -0.36 -0.47 16 4 C -0.07 -0.98 6.85 -79.95 -0.55 -1.52 16 5 N 0.03 0.49 4.45 33.96 0.15 0.64 16 6 O -0.15 -2.57 18.45 -29.46 -0.54 -3.11 16 7 O -0.16 -2.45 18.45 -29.46 -0.54 -2.99 16 8 C 0.04 0.62 9.06 -39.58 -0.36 0.27 16 9 C -0.67 -9.72 4.97 -39.58 -0.20 -9.91 16 10 S 2.68 45.04 4.97 -107.50 -0.53 44.51 16 11 O -0.95 -19.27 16.28 -57.17 -0.93 -20.20 16 12 O -0.97 -16.35 15.56 -57.17 -0.89 -17.24 16 13 N -1.08 -18.68 5.17 -5.88 -0.03 -18.71 16 14 C 0.23 4.80 2.49 -69.08 -0.17 4.63 16 15 H 0.05 1.18 4.55 -51.93 -0.24 0.94 16 16 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 17 C -0.51 -12.79 9.11 -34.44 -0.31 -13.10 16 18 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.88 -24.81 13.96 55.43 0.77 -24.04 16 21 Si 0.86 20.40 27.17 -169.99 -4.62 15.78 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.26 -5.83 6.51 56.52 0.37 -5.46 16 25 C 0.08 0.89 5.62 -104.62 -0.59 0.30 16 26 C -0.18 -1.71 8.44 36.00 0.30 -1.41 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.08 0.44 6.76 -51.93 -0.35 0.09 16 30 H 0.16 1.35 7.61 -52.49 -0.40 0.95 16 31 H 0.17 2.60 6.89 -52.49 -0.36 2.24 16 32 H 0.41 6.23 8.83 -34.47 -0.30 5.92 16 33 H 0.02 0.31 6.92 -51.93 -0.36 -0.05 16 34 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.19 4.85 -51.93 -0.25 0.94 16 39 H 0.09 0.63 6.88 -51.92 -0.36 0.28 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -31.36 341.22 -8.61 -39.97 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.32 Total: 3.96 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.27 Total: -23.71 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.89 Total: -42.11 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -2.91 Total: -43.54 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.62 Total: 15.78 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.53 Total: 44.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.36 -8.61 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.579 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds