Wall clock time and date at job start Tue Mar 31 2020 15:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38255 * 120.00514 * 2 1 4 4 C 1.38215 * 120.00220 * 179.80747 * 3 2 1 5 5 N 1.48017 * 120.00240 * 180.23525 * 4 3 2 6 6 O 1.21799 * 120.00240 * 180.16498 * 5 4 3 7 7 O 1.21808 * 119.99823 * 0.16353 * 5 4 3 8 8 C 1.38254 * 119.99839 * 0.39650 * 4 3 2 9 9 C 1.38217 * 120.00279 * 359.85921 * 8 4 3 10 10 S 1.76196 * 120.00474 * 179.97438 * 9 8 4 11 11 O 1.42105 * 106.39722 * 356.38303 * 10 9 8 12 12 O 1.42093 * 106.40527 * 129.30093 * 10 9 8 13 13 N 1.65603 * 107.21753 * 242.84422 * 10 9 8 14 14 C 1.46502 * 119.99927 * 65.91034 * 13 10 9 15 15 H 1.08994 * 109.47259 * 24.77946 * 14 13 10 16 16 C 1.53001 * 109.46892 * 264.77728 * 14 13 10 17 17 C 1.50707 * 109.46883 * 144.78055 * 14 13 10 18 18 H 1.07992 * 119.99842 * 34.16762 * 17 14 13 19 19 C 1.37875 * 119.99855 * 214.16752 * 17 14 13 20 20 N 1.31514 * 120.00106 * 183.48959 * 19 17 14 21 21 Si 1.86800 * 119.99975 * 3.48924 * 19 17 14 22 22 H 1.48504 * 109.47067 * 93.22438 * 21 19 17 23 23 H 1.48500 * 109.47042 * 213.22447 * 21 19 17 24 24 H 1.48505 * 109.47028 * 333.22457 * 21 19 17 25 25 C 1.38223 * 119.99502 * 180.27234 * 2 1 3 26 26 C 1.50689 * 120.00219 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47568 * 269.73055 * 1 2 3 28 28 H 1.09002 * 109.46799 * 29.72662 * 1 2 3 29 29 H 1.08997 * 109.47692 * 149.72559 * 1 2 3 30 30 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 31 31 H 1.07993 * 120.00139 * 179.83174 * 8 4 3 32 32 H 0.96995 * 119.99475 * 245.90611 * 13 10 9 33 33 H 1.09002 * 109.47083 * 65.27374 * 16 14 13 34 34 H 1.08996 * 109.47038 * 185.27318 * 16 14 13 35 35 H 1.08998 * 109.47014 * 305.27322 * 16 14 13 36 36 H 0.96992 * 120.00253 * 180.02562 * 20 19 17 37 37 H 1.08996 * 109.47699 * 86.95027 * 26 25 2 38 38 H 1.08996 * 109.47343 * 206.95715 * 26 25 2 39 39 H 1.09010 * 109.47334 * 326.95148 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0040 5 7 4.3206 2.4790 0.0093 6 8 5.5386 2.4789 0.0098 7 8 3.7117 3.5339 0.0131 8 6 4.2717 -0.0002 -0.0002 9 6 3.5805 -1.1971 -0.0056 10 16 4.4614 -2.7231 -0.0117 11 8 5.8403 -2.3900 -0.0957 12 8 3.9138 -3.5067 1.0396 13 7 4.0817 -3.5026 -1.4226 14 6 4.4987 -2.9359 -2.7076 15 1 5.3717 -2.3006 -2.5584 16 6 3.3561 -2.1035 -3.2928 17 6 4.8461 -4.0515 -3.6595 18 1 4.3022 -4.9836 -3.6204 19 6 5.8584 -3.8820 -4.5801 20 7 6.1161 -4.8288 -5.4559 21 14 6.8637 -2.3076 -4.5837 22 1 8.0805 -2.4954 -3.7532 23 1 7.2608 -1.9770 -5.9759 24 1 6.0491 -1.1989 -4.0246 25 6 2.1979 -1.1971 -0.0057 26 6 1.4444 -2.5020 -0.0113 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 0.8925 -0.5096 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6584 2.1326 -0.0004 31 1 5.3516 -0.0003 0.0002 32 1 3.5833 -4.3343 -1.3981 33 1 3.1675 -1.2432 -2.6506 34 1 3.6308 -1.7594 -4.2898 35 1 2.4559 -2.7150 -3.3547 36 1 6.8284 -4.7097 -6.1033 37 1 1.2150 -2.7848 -1.0386 38 1 2.0561 -3.2768 0.4508 39 1 0.5169 -2.3885 0.5500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:25 Heat of formation + Delta-G solvation = -78.191322 kcal Electronic energy + Delta-G solvation = -27024.488165 eV Core-core repulsion = 23061.615004 eV Total energy + Delta-G solvation = -3962.873161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.44944 -41.11445 -38.62129 -37.84766 -37.50248 -37.14279 -35.12785 -34.33563 -33.94275 -30.90879 -29.92711 -28.43644 -27.30148 -26.32108 -24.53735 -22.73700 -22.56748 -20.89987 -20.29491 -19.92299 -19.48023 -18.80662 -18.18473 -17.78415 -17.71845 -17.07820 -17.00251 -16.22900 -15.63545 -15.42841 -14.79827 -14.66046 -14.60021 -14.04197 -14.01186 -13.80413 -13.66473 -13.56328 -13.45485 -13.43935 -13.37954 -13.05272 -12.94705 -12.86885 -12.73165 -12.66294 -12.44754 -12.33555 -12.30200 -11.98815 -11.84354 -11.29313 -10.98144 -10.82286 -10.32573 -10.24285 -8.37789 -6.41169 -1.43884 -0.89405 -0.66329 0.04152 0.15600 1.26460 1.35899 1.37952 1.68675 1.95578 2.25588 2.49979 2.99082 3.02221 3.20505 3.31468 3.40677 3.54681 3.69618 4.03883 4.14994 4.19648 4.31795 4.34461 4.53012 4.61460 4.71131 4.73922 4.79679 4.81071 4.83421 5.01385 5.09439 5.12285 5.30578 5.40695 5.45730 5.49128 6.21884 6.27376 6.33085 6.67119 7.24050 8.77382 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.005454 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.590210 B = 5132.977094 C = 6027.020734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C 0.000 4.000 4 C -0.082 4.082 5 N 0.032 4.968 6 O -0.212 6.212 7 O -0.133 6.133 8 C 0.022 3.978 9 C -0.680 4.680 10 S 2.696 3.304 11 O -0.993 6.993 12 O -0.967 6.967 13 N -1.084 6.084 14 C 0.235 3.765 15 H 0.036 0.964 16 C -0.153 4.153 17 C -0.511 4.511 18 H 0.063 0.937 19 C 0.032 3.968 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.276 1.276 24 H -0.242 1.242 25 C 0.077 3.923 26 C -0.186 4.186 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.188 0.812 31 H 0.153 0.847 32 H 0.425 0.575 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.269 0.731 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 10.169 11.325 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.019 4.019 4 C -0.166 4.166 5 N 0.549 4.451 6 O -0.415 6.415 7 O -0.359 6.359 8 C 0.002 3.998 9 C -0.767 4.767 10 S 2.786 3.214 11 O -0.984 6.984 12 O -0.957 6.957 13 N -0.847 5.847 14 C 0.129 3.871 15 H 0.054 0.946 16 C -0.212 4.212 17 C -0.551 4.551 18 H 0.081 0.919 19 C -0.168 4.168 20 N -0.568 5.568 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.201 1.201 24 H -0.165 1.165 25 C 0.075 3.925 26 C -0.242 4.242 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.205 0.795 31 H 0.170 0.830 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.070 9.346 11.836 22.038 hybrid contribution 1.182 1.042 -0.605 1.688 sum -14.887 10.388 11.231 21.346 Atomic orbital electron populations 1.21092 0.85160 1.06003 1.05160 1.20351 0.99589 0.89476 0.99904 1.21566 0.89425 1.02258 0.88640 1.21198 0.93710 0.82543 1.19142 1.43740 1.01242 1.03115 0.97027 1.94608 0.96010 1.94495 1.56408 1.94462 1.69761 1.20172 1.51469 1.20702 1.02033 0.89600 0.87509 1.30916 1.07269 1.18577 1.19961 1.01685 0.73240 0.73516 0.72959 1.93547 1.32928 1.85038 1.86839 1.93519 1.79504 1.68238 1.54436 1.55378 1.73021 1.36119 1.20187 1.18941 0.93818 0.93393 0.80917 0.94626 1.22328 1.00021 0.98626 1.00273 1.21210 1.17740 1.01001 1.15164 0.91907 1.25573 0.97541 0.98580 0.95135 1.69959 1.32141 1.35063 1.19664 0.86424 0.80602 0.82317 0.78045 1.20400 1.20093 1.16542 1.20258 0.90113 0.98657 0.83429 1.21973 1.03444 0.91887 1.06861 0.88107 0.88741 0.88432 0.79455 0.82960 0.73706 0.93670 0.93101 0.90342 0.92146 0.85952 0.89088 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.21 71.23 0.66 -0.02 16 2 C -0.09 -1.35 5.88 -19.87 -0.12 -1.47 16 3 C 0.00 0.00 9.21 22.27 0.21 0.20 16 4 C -0.08 -2.13 6.85 36.37 0.25 -1.88 16 5 N 0.03 0.96 4.45 -46.47 -0.21 0.75 16 6 O -0.21 -7.30 18.45 18.89 0.35 -6.96 16 7 O -0.13 -3.66 18.45 18.88 0.35 -3.31 16 8 C 0.02 0.65 9.06 22.27 0.20 0.85 16 9 C -0.68 -18.56 4.97 22.27 0.11 -18.44 16 10 S 2.70 89.62 4.97 -56.49 -0.28 89.34 16 11 O -0.99 -41.47 16.28 -128.00 -2.08 -43.56 16 12 O -0.97 -31.82 15.56 -128.00 -1.99 -33.81 16 13 N -1.08 -36.50 5.17 -172.51 -0.89 -37.39 16 14 C 0.24 9.59 2.49 44.25 0.11 9.70 16 15 H 0.04 1.59 4.55 -2.39 -0.01 1.58 16 16 C -0.15 -5.10 9.49 71.98 0.68 -4.42 16 17 C -0.51 -25.76 9.11 25.60 0.23 -25.53 16 18 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 19 C 0.03 1.76 5.47 84.65 0.46 2.22 16 20 N -0.93 -54.13 13.96 21.45 0.30 -53.83 16 21 Si 0.90 42.60 27.17 68.60 1.86 44.46 16 22 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.24 -10.52 6.51 99.48 0.65 -9.88 16 25 C 0.08 1.51 5.62 -19.87 -0.11 1.40 16 26 C -0.19 -2.73 8.44 71.23 0.60 -2.13 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.09 0.30 8.08 -2.39 -0.02 0.28 16 29 H 0.10 0.35 6.76 -2.39 -0.02 0.34 16 30 H 0.19 2.16 7.61 -2.91 -0.02 2.14 16 31 H 0.15 4.95 6.89 -2.91 -0.02 4.93 16 32 H 0.43 12.38 8.83 -96.75 -0.85 11.53 16 33 H 0.04 1.27 6.92 -2.39 -0.02 1.26 16 34 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 36 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.72 4.85 -2.39 -0.01 1.71 16 39 H 0.13 0.98 6.88 -2.38 -0.02 0.96 16 Total: -1.00 -71.51 341.22 0.89 -70.62 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.20 Total: 13.20 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 3.28 Total: -39.52 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -0.80 Total: -90.47 kcal Atomic # 8 Polarization: -84.26 SS G_CDS: -3.38 Total: -87.63 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.86 Total: 44.46 kcal Atomic # 16 Polarization: 89.62 SS G_CDS: -0.28 Total: 89.34 kcal Total: -71.51 0.89 -70.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.570 kcal (2) G-P(sol) polarization free energy of solvation -71.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds