Wall clock time and date at job start Tue Mar 31 2020 15:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38248 * 120.00386 * 2 1 4 4 C 1.38215 * 120.00377 * 179.97438 * 3 2 1 5 5 N 1.48019 * 120.00245 * 180.02562 * 4 3 2 6 6 O 1.21797 * 120.00100 * 352.95955 * 5 4 3 7 7 O 1.21798 * 119.99792 * 172.96573 * 5 4 3 8 8 C 1.38263 * 119.99640 * 359.97438 * 4 3 2 9 9 S 1.76205 * 119.99782 * 180.02562 * 8 4 3 10 10 O 1.42101 * 106.39835 * 309.17983 * 9 8 4 11 11 O 1.42107 * 106.39868 * 176.26253 * 9 8 4 12 12 N 1.65596 * 107.21750 * 62.72055 * 9 8 4 13 13 C 1.46505 * 120.00010 * 64.16985 * 12 9 8 14 14 H 1.09000 * 109.46894 * 335.28155 * 13 12 9 15 15 C 1.52995 * 109.47017 * 95.28076 * 13 12 9 16 16 C 1.50696 * 109.46865 * 215.28421 * 13 12 9 17 17 H 1.07999 * 120.00519 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99819 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00098 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99823 * 179.97438 * 18 16 13 21 21 H 1.48492 * 109.47297 * 59.99733 * 20 18 16 22 22 H 1.48503 * 109.46973 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47304 * 299.99413 * 20 18 16 24 24 C 1.38212 * 120.00114 * 0.27731 * 8 4 3 25 25 C 1.38220 * 119.99595 * 179.97438 * 2 1 3 26 26 C 1.50697 * 120.00017 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46969 * 89.99690 * 1 2 3 28 28 H 1.08996 * 109.47160 * 210.00020 * 1 2 3 29 29 H 1.09006 * 109.46515 * 330.00010 * 1 2 3 30 30 H 1.08003 * 120.00129 * 359.97438 * 3 2 1 31 31 H 0.96992 * 119.99915 * 244.16316 * 12 9 8 32 32 H 1.08997 * 109.47681 * 299.99819 * 15 13 12 33 33 H 1.09004 * 109.47022 * 179.97438 * 15 13 12 34 34 H 1.09000 * 109.47224 * 60.00280 * 15 13 12 35 35 H 0.97009 * 120.00232 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.00286 * 179.72982 * 24 8 4 37 37 H 1.08999 * 109.47010 * 90.00202 * 26 25 2 38 38 H 1.09000 * 109.46837 * 210.00178 * 26 25 2 39 39 H 1.09001 * 109.47125 * 330.00034 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 7 4.3207 2.4791 0.0011 6 8 3.7187 3.5299 -0.1282 7 8 5.5317 2.4829 0.1308 8 6 4.2717 -0.0002 0.0016 9 16 6.0338 -0.0003 0.0030 10 8 6.4358 0.8605 -1.0538 11 8 6.4349 -1.3606 0.0928 12 7 6.5229 0.7253 1.4089 13 6 6.2107 0.1066 2.6996 14 1 5.3305 -0.5278 2.5950 15 6 7.3985 -0.7409 3.1595 16 6 5.9363 1.1821 3.7189 17 1 5.9895 2.2225 3.4339 18 6 5.6182 0.8380 5.0156 19 7 5.5538 -0.4288 5.3628 20 14 5.2788 2.1712 6.2792 21 1 4.1258 2.9939 5.8332 22 1 4.9621 1.5441 7.5875 23 1 6.4780 3.0355 6.4213 24 6 3.5806 -1.1971 -0.0037 25 6 2.1981 -1.1971 0.0005 26 6 1.4445 -2.5021 0.0017 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8901 0.5139 30 1 1.6584 2.1326 -0.0004 31 1 7.0161 1.5599 1.3778 32 1 7.5970 -1.5188 2.4223 33 1 7.1664 -1.2009 4.1201 34 1 8.2786 -0.1064 3.2642 35 1 5.3304 -0.6709 6.2752 36 1 4.1206 -2.1325 -0.0072 37 1 1.2624 -2.8174 -1.0257 38 1 2.0337 -3.2614 0.5159 39 1 0.4923 -2.3713 0.5158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:30 Heat of formation + Delta-G solvation = -45.189371 kcal Electronic energy + Delta-G solvation = -27523.430562 eV Core-core repulsion = 23561.988473 eV Total energy + Delta-G solvation = -3961.442089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08022 -39.91880 -36.92998 -36.28159 -35.36707 -35.35324 -34.15675 -32.78387 -32.19914 -28.87958 -28.26212 -27.76651 -25.23275 -25.12279 -22.88525 -21.79490 -20.89876 -19.52316 -18.60394 -18.51135 -17.37891 -17.34327 -16.65785 -16.51396 -15.93443 -15.22032 -14.75436 -14.71778 -14.66126 -14.53622 -13.59291 -13.20134 -13.14172 -12.72633 -12.66757 -12.51412 -12.22030 -12.03602 -11.99061 -11.75558 -11.64163 -11.60930 -11.23735 -11.18603 -11.06996 -10.98525 -10.83288 -10.62714 -10.59643 -10.28524 -10.10964 -9.53561 -9.36660 -9.21436 -8.62814 -8.28281 -6.16596 -4.24457 -0.26539 0.55657 0.88813 1.41247 1.47998 2.93797 3.24136 3.28392 3.32064 3.59018 4.04015 4.20915 4.23114 4.32753 4.45880 4.52200 4.76578 4.99234 5.10503 5.14790 5.14976 5.17582 5.29739 5.37974 5.50097 5.53584 5.60300 5.69053 5.97491 6.20618 6.32966 6.54734 6.82463 7.03837 7.07927 7.56803 7.69771 7.72816 7.98396 8.02441 8.30836 8.80612 9.42315 10.88837 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.005991 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.749771 B = 4672.829462 C = 5097.500843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.045 4.045 3 C -0.068 4.068 4 C 0.050 3.950 5 N 0.021 4.979 6 O -0.155 6.155 7 O -0.126 6.126 8 C -0.619 4.619 9 S 2.691 3.309 10 O -0.958 6.958 11 O -0.960 6.960 12 N -1.079 6.079 13 C 0.273 3.727 14 H 0.034 0.966 15 C -0.157 4.157 16 C -0.525 4.525 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.016 4.016 25 C -0.060 4.060 26 C -0.125 4.125 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.420 0.580 32 H 0.025 0.975 33 H 0.091 0.909 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.164 0.836 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 -3.110 -10.102 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.046 4.046 3 C -0.088 4.088 4 C -0.033 4.033 5 N 0.542 4.458 6 O -0.370 6.370 7 O -0.344 6.344 8 C -0.700 4.700 9 S 2.773 3.227 10 O -0.948 6.948 11 O -0.949 6.949 12 N -0.844 5.844 13 C 0.168 3.832 14 H 0.052 0.948 15 C -0.216 4.216 16 C -0.565 4.565 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.035 4.035 25 C -0.061 4.061 26 C -0.181 4.181 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.257 0.743 32 H 0.044 0.956 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.181 0.819 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.936 -4.349 -10.590 15.832 hybrid contribution -0.549 1.623 1.160 2.069 sum -11.485 -2.726 -9.429 15.108 Atomic orbital electron populations 1.20998 0.89078 1.04332 1.03402 1.19960 0.97177 0.91279 0.96230 1.20944 0.90955 1.00354 0.96553 1.20406 0.92527 0.82620 1.07744 1.43550 1.01310 1.02560 0.98430 1.94485 1.70039 1.19542 1.52901 1.94498 0.95719 1.93049 1.51183 1.31411 1.31565 0.96180 1.10872 1.02284 0.72851 0.73721 0.73891 1.93590 1.79885 1.66376 1.54904 1.93571 1.78928 1.35431 1.87015 1.55553 1.69094 1.38752 1.21048 1.18537 0.93697 0.92371 0.78547 0.94838 1.22219 0.98258 0.98520 1.02635 1.21300 1.48041 0.93040 0.94120 0.91661 1.24908 0.94992 0.95635 0.98232 1.69869 1.47956 1.15615 1.19137 0.86558 0.78999 0.81676 0.80232 1.20350 1.21156 1.19859 1.20989 0.93817 0.96669 0.92038 1.20304 0.93793 0.96035 0.96009 1.21023 1.00614 0.93105 1.03359 0.89865 0.89871 0.90394 0.82491 0.74319 0.95563 0.89013 0.94589 0.92556 0.81870 0.89880 0.90031 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.61 36.01 0.35 -0.53 16 2 C -0.05 -0.52 5.88 -104.62 -0.62 -1.14 16 3 C -0.07 -0.96 9.21 -39.59 -0.36 -1.32 16 4 C 0.05 0.89 6.80 -79.95 -0.54 0.34 16 5 N 0.02 0.42 4.45 33.96 0.15 0.57 16 6 O -0.16 -2.91 18.47 -29.46 -0.54 -3.46 16 7 O -0.13 -2.64 11.70 -37.29 -0.44 -3.08 16 8 C -0.62 -11.09 5.68 -39.58 -0.22 -11.31 16 9 S 2.69 53.85 4.82 -107.50 -0.52 53.33 16 10 O -0.96 -20.41 15.34 -67.24 -1.03 -21.44 16 11 O -0.96 -20.13 16.29 -57.17 -0.93 -21.06 16 12 N -1.08 -23.16 4.19 -5.88 -0.02 -23.19 16 13 C 0.27 6.64 2.77 -69.08 -0.19 6.45 16 14 H 0.03 0.86 7.81 -51.93 -0.41 0.45 16 15 C -0.16 -3.77 9.29 37.16 0.35 -3.42 16 16 C -0.53 -13.84 8.76 -34.44 -0.30 -14.14 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.02 -0.23 9.20 -39.58 -0.36 -0.60 16 25 C -0.06 -0.72 5.88 -104.62 -0.62 -1.33 16 26 C -0.12 -0.98 9.60 36.00 0.35 -0.64 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.49 5.95 -51.93 -0.31 0.18 16 29 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.16 1.84 7.63 -52.48 -0.40 1.44 16 31 H 0.42 8.60 7.54 -34.46 -0.26 8.34 16 32 H 0.03 0.59 7.67 -51.93 -0.40 0.19 16 33 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.16 2.19 7.34 -52.49 -0.39 1.80 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -32.36 338.07 -9.35 -41.71 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.43 Total: 5.23 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.28 Total: -26.00 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.75 Total: -46.08 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -2.94 Total: -49.03 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.52 Total: 53.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.36 -9.35 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds