Wall clock time and date at job start Tue Mar 31 2020 15:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38248 * 120.00386 * 2 1 4 4 C 1.38215 * 120.00377 * 179.97438 * 3 2 1 5 5 N 1.48019 * 120.00245 * 180.02562 * 4 3 2 6 6 O 1.21797 * 120.00100 * 352.95955 * 5 4 3 7 7 O 1.21798 * 119.99792 * 172.96573 * 5 4 3 8 8 C 1.38263 * 119.99640 * 359.97438 * 4 3 2 9 9 S 1.76205 * 119.99782 * 180.02562 * 8 4 3 10 10 O 1.42101 * 106.39835 * 309.17983 * 9 8 4 11 11 O 1.42107 * 106.39868 * 176.26253 * 9 8 4 12 12 N 1.65596 * 107.21750 * 62.72055 * 9 8 4 13 13 C 1.46505 * 120.00010 * 64.16985 * 12 9 8 14 14 H 1.09000 * 109.46894 * 335.28155 * 13 12 9 15 15 C 1.52995 * 109.47017 * 95.28076 * 13 12 9 16 16 C 1.50696 * 109.46865 * 215.28421 * 13 12 9 17 17 H 1.07999 * 120.00519 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99819 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00098 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99823 * 179.97438 * 18 16 13 21 21 H 1.48492 * 109.47297 * 59.99733 * 20 18 16 22 22 H 1.48503 * 109.46973 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47304 * 299.99413 * 20 18 16 24 24 C 1.38212 * 120.00114 * 0.27731 * 8 4 3 25 25 C 1.38220 * 119.99595 * 179.97438 * 2 1 3 26 26 C 1.50697 * 120.00017 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46969 * 89.99690 * 1 2 3 28 28 H 1.08996 * 109.47160 * 210.00020 * 1 2 3 29 29 H 1.09006 * 109.46515 * 330.00010 * 1 2 3 30 30 H 1.08003 * 120.00129 * 359.97438 * 3 2 1 31 31 H 0.96992 * 119.99915 * 244.16316 * 12 9 8 32 32 H 1.08997 * 109.47681 * 299.99819 * 15 13 12 33 33 H 1.09004 * 109.47022 * 179.97438 * 15 13 12 34 34 H 1.09000 * 109.47224 * 60.00280 * 15 13 12 35 35 H 0.97009 * 120.00232 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.00286 * 179.72982 * 24 8 4 37 37 H 1.08999 * 109.47010 * 90.00202 * 26 25 2 38 38 H 1.09000 * 109.46837 * 210.00178 * 26 25 2 39 39 H 1.09001 * 109.47125 * 330.00034 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 7 4.3207 2.4791 0.0011 6 8 3.7187 3.5299 -0.1282 7 8 5.5317 2.4829 0.1308 8 6 4.2717 -0.0002 0.0016 9 16 6.0338 -0.0003 0.0030 10 8 6.4358 0.8605 -1.0538 11 8 6.4349 -1.3606 0.0928 12 7 6.5229 0.7253 1.4089 13 6 6.2107 0.1066 2.6996 14 1 5.3305 -0.5278 2.5950 15 6 7.3985 -0.7409 3.1595 16 6 5.9363 1.1821 3.7189 17 1 5.9895 2.2225 3.4339 18 6 5.6182 0.8380 5.0156 19 7 5.5538 -0.4288 5.3628 20 14 5.2788 2.1712 6.2792 21 1 4.1258 2.9939 5.8332 22 1 4.9621 1.5441 7.5875 23 1 6.4780 3.0355 6.4213 24 6 3.5806 -1.1971 -0.0037 25 6 2.1981 -1.1971 0.0005 26 6 1.4445 -2.5021 0.0017 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8901 0.5139 30 1 1.6584 2.1326 -0.0004 31 1 7.0161 1.5599 1.3778 32 1 7.5970 -1.5188 2.4223 33 1 7.1664 -1.2009 4.1201 34 1 8.2786 -0.1064 3.2642 35 1 5.3304 -0.6709 6.2752 36 1 4.1206 -2.1325 -0.0072 37 1 1.2624 -2.8174 -1.0257 38 1 2.0337 -3.2614 0.5159 39 1 0.4923 -2.3713 0.5158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:29 Heat of formation + Delta-G solvation = -66.113884 kcal Electronic energy + Delta-G solvation = -27524.337917 eV Core-core repulsion = 23561.988473 eV Total energy + Delta-G solvation = -3962.349444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.49632 -40.99498 -38.52197 -37.84401 -37.18780 -36.99374 -35.17469 -34.16296 -33.77210 -30.15534 -29.88776 -28.64975 -27.27188 -26.28789 -23.91675 -23.14063 -22.68213 -20.94403 -20.06337 -20.01182 -19.07412 -18.82588 -18.09287 -17.89732 -17.45960 -16.97975 -16.29913 -15.81077 -15.63457 -15.55159 -15.35183 -14.56231 -14.10828 -13.91532 -13.70791 -13.68888 -13.58659 -13.48585 -13.30977 -13.26886 -13.06793 -12.96000 -12.86905 -12.77137 -12.66370 -12.44075 -12.40688 -12.31740 -12.24134 -12.01904 -11.97268 -11.17189 -10.67885 -10.59659 -10.33806 -10.10975 -8.18866 -6.33059 -1.56490 -0.69915 -0.50369 0.10921 0.17212 1.39810 1.41654 1.49082 1.81497 2.03330 2.40201 2.58050 2.98313 3.09747 3.28817 3.49804 3.54745 3.70596 3.82100 4.13761 4.25978 4.40686 4.44244 4.47096 4.62135 4.77490 4.80107 4.88714 4.89664 5.05763 5.06768 5.10872 5.13951 5.18874 5.48116 5.54758 5.71099 5.98556 6.06551 6.27488 6.49430 6.78046 7.36436 8.86080 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.005991 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.749771 B = 4672.829462 C = 5097.500843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.033 4.033 3 C -0.067 4.067 4 C 0.017 3.983 5 N 0.019 4.981 6 O -0.135 6.135 7 O -0.182 6.182 8 C -0.645 4.645 9 S 2.704 3.296 10 O -0.977 6.977 11 O -0.979 6.979 12 N -1.084 6.084 13 C 0.279 3.721 14 H 0.019 0.981 15 C -0.150 4.150 16 C -0.542 4.542 17 H 0.058 0.942 18 C 0.025 3.975 19 N -0.909 5.909 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.028 4.028 25 C -0.051 4.051 26 C -0.126 4.126 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.180 0.820 31 H 0.420 0.580 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.170 0.830 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.382 -3.675 -10.153 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.034 4.034 3 C -0.087 4.087 4 C -0.066 4.066 5 N 0.535 4.465 6 O -0.358 6.358 7 O -0.388 6.388 8 C -0.731 4.731 9 S 2.791 3.209 10 O -0.967 6.967 11 O -0.969 6.969 12 N -0.848 5.848 13 C 0.174 3.826 14 H 0.037 0.963 15 C -0.210 4.210 16 C -0.581 4.581 17 H 0.076 0.924 18 C -0.176 4.176 19 N -0.547 5.547 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.203 1.203 23 H -0.197 1.197 24 C -0.048 4.048 25 C -0.052 4.052 26 C -0.182 4.182 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.197 0.803 31 H 0.257 0.743 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.188 0.812 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.287 -4.948 -10.632 18.483 hybrid contribution 0.281 1.742 1.090 2.074 sum -14.006 -3.207 -9.541 17.248 Atomic orbital electron populations 1.21206 0.85158 1.05931 1.05437 1.20582 0.99639 0.89905 0.93282 1.21445 0.89401 1.02591 0.95252 1.20658 0.93790 0.81240 1.10914 1.43900 1.01311 1.03415 0.97882 1.94419 1.69719 1.20422 1.51233 1.94495 0.96654 1.93400 1.54221 1.30906 1.29716 0.97757 1.14709 1.01472 0.73616 0.72808 0.73005 1.93554 1.81182 1.66794 1.55209 1.93533 1.80284 1.35998 1.87067 1.55418 1.70083 1.38655 1.20607 1.18273 0.93064 0.91878 0.79379 0.96281 1.22125 0.98351 0.98652 1.01872 1.21508 1.48438 0.93134 0.95009 0.92396 1.25587 0.94761 0.97524 0.99762 1.69964 1.48239 1.16913 1.19603 0.85663 0.78738 0.79312 0.78245 1.20215 1.20288 1.19659 1.21333 0.95653 0.95789 0.92007 1.20848 0.92625 0.98401 0.93327 1.21228 1.01042 0.90561 1.05376 0.87260 0.87754 0.89389 0.80290 0.74263 0.94901 0.90685 0.94316 0.92329 0.81221 0.87218 0.89946 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.61 71.24 0.68 -0.39 16 2 C -0.03 -0.64 5.88 -19.87 -0.12 -0.75 16 3 C -0.07 -1.74 9.21 22.27 0.21 -1.54 16 4 C 0.02 0.62 6.80 36.38 0.25 0.86 16 5 N 0.02 0.77 4.45 -46.46 -0.21 0.56 16 6 O -0.14 -5.07 18.47 18.89 0.35 -4.72 16 7 O -0.18 -8.07 11.70 26.37 0.31 -7.76 16 8 C -0.65 -23.50 5.68 22.27 0.13 -23.38 16 9 S 2.70 113.34 4.82 -56.49 -0.27 113.07 16 10 O -0.98 -43.93 15.34 -118.37 -1.82 -45.75 16 11 O -0.98 -42.64 16.29 -128.00 -2.08 -44.73 16 12 N -1.08 -48.91 4.19 -172.53 -0.72 -49.64 16 13 C 0.28 14.06 2.77 44.24 0.12 14.18 16 14 H 0.02 1.02 7.81 -2.39 -0.02 1.00 16 15 C -0.15 -7.45 9.29 71.98 0.67 -6.78 16 16 C -0.54 -29.15 8.76 25.60 0.22 -28.93 16 17 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.02 1.31 5.30 84.66 0.45 1.75 16 19 N -0.91 -49.60 11.32 21.45 0.24 -49.36 16 20 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.03 -0.82 9.20 22.27 0.20 -0.61 16 25 C -0.05 -1.06 5.88 -19.86 -0.12 -1.17 16 26 C -0.13 -1.41 9.60 71.23 0.68 -0.73 16 27 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.10 0.56 5.95 -2.39 -0.01 0.54 16 29 H 0.09 0.69 8.09 -2.38 -0.02 0.68 16 30 H 0.18 3.69 7.63 -2.91 -0.02 3.67 16 31 H 0.42 18.43 7.54 -96.76 -0.73 17.71 16 32 H 0.03 1.52 7.67 -2.39 -0.02 1.50 16 33 H 0.07 3.96 6.07 -2.38 -0.01 3.95 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 36 H 0.17 4.52 7.34 -2.91 -0.02 4.50 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 39 H 0.11 0.70 5.95 -2.39 -0.01 0.69 16 Total: -1.00 -72.37 338.07 1.59 -70.78 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.38 Total: 20.50 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 3.38 Total: -47.48 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -0.69 Total: -98.44 kcal Atomic # 8 Polarization: -99.71 SS G_CDS: -3.24 Total: -102.96 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 113.34 SS G_CDS: -0.27 Total: 113.07 kcal Total: -72.37 1.59 -70.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.669 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds