Wall clock time and date at job start Tue Mar 31 2020 15:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 120.00109 * 2 1 4 4 C 1.38217 * 119.99567 * 179.97438 * 3 2 1 5 5 N 1.48025 * 119.99935 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99653 * 359.97438 * 5 4 3 7 7 O 1.21793 * 119.99984 * 180.02562 * 5 4 3 8 8 C 1.38261 * 120.00162 * 359.81190 * 4 3 2 9 9 C 1.38208 * 119.99964 * 0.42207 * 8 4 3 10 10 S 1.76200 * 119.99944 * 179.80761 * 9 8 4 11 11 O 1.42109 * 106.39920 * 131.26775 * 10 9 8 12 12 O 1.42093 * 106.40432 * 358.35032 * 10 9 8 13 13 N 1.65598 * 107.21750 * 244.80476 * 10 9 8 14 14 C 1.46499 * 119.99768 * 64.50167 * 13 10 9 15 15 C 1.53001 * 109.47309 * 163.56736 * 14 13 10 16 16 C 1.50693 * 109.47237 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00340 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00198 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99460 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00207 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47198 * 90.00248 * 20 18 16 22 22 H 1.48506 * 109.47111 * 210.00048 * 20 18 16 23 23 H 1.48503 * 109.47457 * 330.00018 * 20 18 16 24 24 C 1.38214 * 119.99415 * 179.97438 * 2 1 3 25 25 C 1.50699 * 120.00326 * 359.97438 * 24 2 1 26 26 H 1.09003 * 109.46811 * 270.02503 * 1 2 3 27 27 H 1.08999 * 109.46901 * 30.01532 * 1 2 3 28 28 H 1.08992 * 109.47805 * 150.01677 * 1 2 3 29 29 H 1.07999 * 120.00467 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.00066 * 180.22639 * 8 4 3 31 31 H 0.96998 * 120.00469 * 244.49911 * 13 10 9 32 32 H 1.08998 * 109.47292 * 283.56648 * 14 13 10 33 33 H 1.09000 * 109.47345 * 43.56855 * 14 13 10 34 34 H 1.08998 * 109.46871 * 300.00169 * 15 14 13 35 35 H 1.09000 * 109.46821 * 59.99797 * 15 14 13 36 36 H 0.97001 * 119.99664 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.47589 * 273.81179 * 25 24 2 38 38 H 1.08996 * 109.46951 * 33.81434 * 25 24 2 39 39 H 1.09002 * 109.47321 * 153.81158 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1971 0.0005 5 7 4.3207 2.4790 0.0011 6 8 3.7117 3.5339 0.0006 7 8 5.5386 2.4789 0.0011 8 6 4.2717 -0.0003 0.0050 9 6 3.5806 -1.1971 0.0001 10 16 4.4615 -2.7231 0.0007 11 8 3.8794 -3.5220 1.0217 12 8 5.8423 -2.3894 -0.0326 13 7 4.1289 -3.4816 -1.4333 14 6 4.5613 -2.8805 -2.6974 15 6 4.5089 -3.9327 -3.8068 16 6 4.9530 -3.3142 -5.1072 17 1 5.2440 -2.2746 -5.1392 18 6 4.9889 -4.0757 -6.2562 19 7 4.6350 -5.3418 -6.2171 20 14 5.5401 -3.3091 -7.8679 21 1 7.0093 -3.4672 -8.0144 22 1 4.8544 -3.9860 -8.9980 23 1 5.1947 -1.8649 -7.8729 24 6 2.1980 -1.1970 0.0005 25 6 1.4444 -2.5021 0.0017 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8900 -0.5135 29 1 1.6584 2.1326 0.0004 30 1 5.3516 -0.0003 0.0091 31 1 3.6479 -4.3239 -1.4364 32 1 3.8997 -2.0521 -2.9508 33 1 5.5818 -2.5119 -2.5942 34 1 5.1704 -4.7611 -3.5534 35 1 3.4883 -4.3013 -3.9101 36 1 4.6599 -5.8774 -7.0255 37 1 1.2039 -2.7820 1.0274 38 1 0.5231 -2.3902 -0.5699 39 1 2.0611 -3.2782 -0.4516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:10 Heat of formation + Delta-G solvation = -62.289772 kcal Electronic energy + Delta-G solvation = -26006.148109 eV Core-core repulsion = 22043.964492 eV Total energy + Delta-G solvation = -3962.183618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.39229 -40.27621 -37.39092 -36.74967 -35.93833 -35.70249 -34.34166 -33.23418 -32.83746 -29.43007 -29.04167 -27.84052 -25.41706 -24.63196 -23.71722 -21.72513 -21.32652 -19.79612 -19.09290 -18.88679 -17.74557 -17.58178 -16.82225 -16.68680 -16.37905 -16.28202 -15.49036 -15.02674 -14.64690 -14.26252 -14.12069 -13.97043 -13.41421 -13.31979 -12.85630 -12.78208 -12.73823 -12.63108 -12.25475 -12.14587 -11.96296 -11.93566 -11.74285 -11.46660 -11.38849 -11.30376 -11.24384 -11.08839 -10.72183 -10.57206 -10.13862 -9.71737 -9.53976 -9.37858 -9.15264 -8.49908 -6.16669 -4.20530 -0.48712 0.08208 0.33866 0.99385 1.14353 2.54389 2.99352 3.24469 3.31305 3.34217 3.57641 3.80146 4.03059 4.10203 4.21605 4.29955 4.34329 4.53224 4.79251 4.89150 4.97265 5.01628 5.11848 5.17752 5.20626 5.30652 5.44918 5.47696 5.57132 5.65683 5.87667 6.00455 6.17943 6.27119 6.54990 7.14692 7.43402 7.44504 7.52323 7.80794 8.17653 8.85001 9.44925 10.94567 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.003886 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.808330 B = 7203.924782 C = 7998.694363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C -0.006 4.006 4 C -0.069 4.069 5 N 0.031 4.969 6 O -0.162 6.162 7 O -0.151 6.151 8 C 0.044 3.956 9 C -0.676 4.676 10 S 2.695 3.305 11 O -0.957 6.957 12 O -0.948 6.948 13 N -1.106 6.106 14 C 0.116 3.884 15 C 0.019 3.981 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.896 3.104 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.070 3.930 25 C -0.153 4.153 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.173 0.827 31 H 0.419 0.581 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.267 8.499 14.348 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.108 4.108 3 C -0.025 4.025 4 C -0.152 4.152 5 N 0.551 4.449 6 O -0.377 6.377 7 O -0.368 6.368 8 C 0.023 3.977 9 C -0.759 4.759 10 S 2.780 3.220 11 O -0.947 6.947 12 O -0.938 6.938 13 N -0.870 5.870 14 C -0.009 4.009 15 C -0.020 4.020 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.069 3.931 25 C -0.209 4.209 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.177 0.823 30 H 0.191 0.809 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.037 7.648 14.903 19.528 hybrid contribution -0.100 1.031 -1.303 1.665 sum -10.137 8.680 13.600 19.054 Atomic orbital electron populations 1.20934 0.88538 1.04426 1.03541 1.19884 0.97625 0.90929 1.02334 1.21144 0.91001 1.00429 0.89950 1.21101 0.92718 0.84038 1.17378 1.43492 1.01338 1.02502 0.97562 1.94525 1.70075 1.19469 1.53606 1.94587 0.95108 1.94130 1.53021 1.20805 1.02525 0.88524 0.85797 1.31357 1.05902 1.20566 1.18072 1.02138 0.73874 0.72999 0.73016 1.93607 1.78993 1.66581 1.55496 1.93605 1.29650 1.84200 1.86342 1.55552 1.74080 1.34851 1.22487 1.21745 0.98718 0.98010 0.82407 1.19282 0.98216 0.93447 0.91004 1.21059 1.45519 0.97139 0.92862 0.92291 1.24985 0.95057 0.94820 0.99255 1.69950 1.47620 1.06607 1.28849 0.86533 0.78935 0.79352 0.82848 1.20424 1.21142 1.19805 1.19888 0.91382 0.96718 0.85113 1.21485 1.01772 0.92290 1.05353 0.89978 0.90456 0.89779 0.82295 0.80932 0.74461 0.92992 0.90965 0.95372 0.95716 0.92745 0.87378 0.88439 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.60 36.01 0.35 -0.29 16 2 C -0.11 -0.94 5.88 -104.63 -0.62 -1.56 16 3 C -0.01 -0.06 9.21 -39.58 -0.36 -0.43 16 4 C -0.07 -0.86 6.85 -79.94 -0.55 -1.41 16 5 N 0.03 0.44 4.45 33.96 0.15 0.59 16 6 O -0.16 -2.26 18.45 -29.46 -0.54 -2.80 16 7 O -0.15 -2.31 18.45 -29.46 -0.54 -2.86 16 8 C 0.04 0.57 9.06 -39.58 -0.36 0.21 16 9 C -0.68 -8.44 5.87 -39.58 -0.23 -8.68 16 10 S 2.69 38.14 4.93 -107.50 -0.53 37.61 16 11 O -0.96 -14.11 16.38 -57.17 -0.94 -15.04 16 12 O -0.95 -16.26 16.44 -57.17 -0.94 -17.20 16 13 N -1.11 -16.12 4.91 -10.61 -0.05 -16.17 16 14 C 0.12 2.09 6.17 -4.04 -0.02 2.07 16 15 C 0.02 0.45 5.12 -27.89 -0.14 0.30 16 16 C -0.53 -13.83 9.11 -34.44 -0.31 -14.15 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 20 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.07 0.73 5.87 -104.62 -0.61 0.12 16 25 C -0.15 -1.29 8.38 36.01 0.30 -0.99 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.08 0.38 6.01 -51.93 -0.31 0.07 16 29 H 0.16 1.21 7.61 -52.49 -0.40 0.81 16 30 H 0.17 2.24 6.89 -52.49 -0.36 1.88 16 31 H 0.42 5.38 8.26 -34.47 -0.28 5.09 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.34 7.73 -51.93 -0.40 0.94 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.58 6.11 -51.93 -0.32 0.27 16 39 H 0.08 0.74 4.87 -51.93 -0.25 0.49 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -32.67 347.07 -9.52 -42.18 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.40 Total: 0.49 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.66 Total: -23.25 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.84 Total: -40.06 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -2.96 Total: -37.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 38.14 SS G_CDS: -0.53 Total: 37.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.67 -9.52 -42.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.106 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds