Wall clock time and date at job start Tue Mar 31 2020 15:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 120.00109 * 2 1 4 4 C 1.38217 * 119.99567 * 179.97438 * 3 2 1 5 5 N 1.48025 * 119.99935 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99653 * 359.97438 * 5 4 3 7 7 O 1.21793 * 119.99984 * 180.02562 * 5 4 3 8 8 C 1.38261 * 120.00162 * 359.81190 * 4 3 2 9 9 C 1.38208 * 119.99964 * 0.42207 * 8 4 3 10 10 S 1.76200 * 119.99944 * 179.80761 * 9 8 4 11 11 O 1.42109 * 106.39920 * 131.26775 * 10 9 8 12 12 O 1.42093 * 106.40432 * 358.35032 * 10 9 8 13 13 N 1.65598 * 107.21750 * 244.80476 * 10 9 8 14 14 C 1.46499 * 119.99768 * 64.50167 * 13 10 9 15 15 C 1.53001 * 109.47309 * 163.56736 * 14 13 10 16 16 C 1.50693 * 109.47237 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00340 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00198 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99460 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00207 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47198 * 90.00248 * 20 18 16 22 22 H 1.48506 * 109.47111 * 210.00048 * 20 18 16 23 23 H 1.48503 * 109.47457 * 330.00018 * 20 18 16 24 24 C 1.38214 * 119.99415 * 179.97438 * 2 1 3 25 25 C 1.50699 * 120.00326 * 359.97438 * 24 2 1 26 26 H 1.09003 * 109.46811 * 270.02503 * 1 2 3 27 27 H 1.08999 * 109.46901 * 30.01532 * 1 2 3 28 28 H 1.08992 * 109.47805 * 150.01677 * 1 2 3 29 29 H 1.07999 * 120.00467 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.00066 * 180.22639 * 8 4 3 31 31 H 0.96998 * 120.00469 * 244.49911 * 13 10 9 32 32 H 1.08998 * 109.47292 * 283.56648 * 14 13 10 33 33 H 1.09000 * 109.47345 * 43.56855 * 14 13 10 34 34 H 1.08998 * 109.46871 * 300.00169 * 15 14 13 35 35 H 1.09000 * 109.46821 * 59.99797 * 15 14 13 36 36 H 0.97001 * 119.99664 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.47589 * 273.81179 * 25 24 2 38 38 H 1.08996 * 109.46951 * 33.81434 * 25 24 2 39 39 H 1.09002 * 109.47321 * 153.81158 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1971 0.0005 5 7 4.3207 2.4790 0.0011 6 8 3.7117 3.5339 0.0006 7 8 5.5386 2.4789 0.0011 8 6 4.2717 -0.0003 0.0050 9 6 3.5806 -1.1971 0.0001 10 16 4.4615 -2.7231 0.0007 11 8 3.8794 -3.5220 1.0217 12 8 5.8423 -2.3894 -0.0326 13 7 4.1289 -3.4816 -1.4333 14 6 4.5613 -2.8805 -2.6974 15 6 4.5089 -3.9327 -3.8068 16 6 4.9530 -3.3142 -5.1072 17 1 5.2440 -2.2746 -5.1392 18 6 4.9889 -4.0757 -6.2562 19 7 4.6350 -5.3418 -6.2171 20 14 5.5401 -3.3091 -7.8679 21 1 7.0093 -3.4672 -8.0144 22 1 4.8544 -3.9860 -8.9980 23 1 5.1947 -1.8649 -7.8729 24 6 2.1980 -1.1970 0.0005 25 6 1.4444 -2.5021 0.0017 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8900 -0.5135 29 1 1.6584 2.1326 0.0004 30 1 5.3516 -0.0003 0.0091 31 1 3.6479 -4.3239 -1.4364 32 1 3.8997 -2.0521 -2.9508 33 1 5.5818 -2.5119 -2.5942 34 1 5.1704 -4.7611 -3.5534 35 1 3.4883 -4.3013 -3.9101 36 1 4.6599 -5.8774 -7.0255 37 1 1.2039 -2.7820 1.0274 38 1 0.5231 -2.3902 -0.5699 39 1 2.0611 -3.2782 -0.4516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:09 Heat of formation + Delta-G solvation = -83.667580 kcal Electronic energy + Delta-G solvation = -26007.075121 eV Core-core repulsion = 22043.964492 eV Total energy + Delta-G solvation = -3963.110629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.43914 -41.12163 -38.61473 -37.83753 -37.19958 -37.15465 -35.18647 -34.76253 -33.99341 -31.10097 -29.97399 -28.46904 -26.48354 -26.33096 -24.57799 -23.04705 -22.62746 -20.85280 -20.21590 -19.92278 -18.92628 -18.77987 -18.26229 -17.77729 -17.76159 -17.09363 -16.70578 -16.46364 -15.83705 -15.58482 -15.44081 -14.82232 -14.46105 -14.11482 -13.81750 -13.71370 -13.54057 -13.47486 -13.43837 -13.42202 -13.32372 -13.20858 -13.01729 -12.85520 -12.72164 -12.50433 -12.43139 -12.39482 -12.31798 -12.07434 -11.54335 -11.34188 -11.01567 -10.65792 -10.41964 -10.27951 -8.22346 -6.32154 -1.44813 -0.95450 -0.68985 0.03218 0.15589 1.41914 1.43457 1.52970 1.62739 1.88844 2.41206 2.45924 2.95786 3.13253 3.18183 3.26860 3.37285 3.49767 3.65030 4.03108 4.10694 4.12352 4.27252 4.32169 4.46949 4.51460 4.62116 4.72629 4.78953 4.81437 4.90282 4.97627 5.05977 5.11585 5.39777 5.48139 5.62533 5.79491 5.96656 6.20248 6.33573 6.83103 7.37185 8.89306 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.003886 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.808330 B = 7203.924782 C = 7998.694363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.094 4.094 3 C 0.000 4.000 4 C -0.082 4.082 5 N 0.032 4.968 6 O -0.141 6.141 7 O -0.202 6.202 8 C 0.027 3.973 9 C -0.683 4.683 10 S 2.713 3.287 11 O -0.961 6.961 12 O -0.984 6.984 13 N -1.102 6.102 14 C 0.132 3.868 15 C 0.022 3.978 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.264 1.264 24 C 0.070 3.930 25 C -0.162 4.162 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.187 0.813 30 H 0.161 0.839 31 H 0.427 0.573 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.003 0.997 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 9.634 14.443 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.095 4.095 3 C -0.019 4.019 4 C -0.166 4.166 5 N 0.549 4.451 6 O -0.364 6.364 7 O -0.407 6.407 8 C 0.007 3.993 9 C -0.770 4.770 10 S 2.802 3.198 11 O -0.951 6.951 12 O -0.974 6.974 13 N -0.866 5.866 14 C 0.006 3.994 15 C -0.017 4.017 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.188 1.188 24 C 0.068 3.932 25 C -0.218 4.218 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.204 0.796 30 H 0.178 0.822 31 H 0.265 0.735 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.022 0.978 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.675 8.715 15.006 21.489 hybrid contribution 0.580 0.701 -1.254 1.549 sum -12.095 9.416 13.752 20.593 Atomic orbital electron populations 1.21121 0.85362 1.05902 1.05200 1.20317 0.99564 0.89611 1.00027 1.21568 0.89694 1.02166 0.88439 1.21226 0.93656 0.82774 1.18957 1.43731 1.01256 1.03086 0.97073 1.94479 1.69806 1.20149 1.51989 1.94599 0.95917 1.94456 1.55766 1.20755 1.02295 0.89292 0.86999 1.30929 1.06953 1.18791 1.20293 1.01292 0.73057 0.73119 0.72371 1.93594 1.78929 1.67336 1.55278 1.93561 1.32364 1.84849 1.86650 1.55324 1.74190 1.35612 1.21441 1.21338 0.98939 0.96887 0.82238 1.19145 0.96850 0.93864 0.91849 1.21535 1.45040 0.97504 0.94285 0.91920 1.25815 0.95228 0.95253 1.02728 1.70059 1.48915 1.07883 1.29771 0.85545 0.78384 0.78883 0.78835 1.20235 1.20708 1.18843 1.20263 0.90482 0.98516 0.83921 1.21700 1.02587 0.90743 1.06742 0.88016 0.88884 0.88480 0.79600 0.82177 0.73511 0.91310 0.91850 0.97840 0.96475 0.92667 0.85845 0.85397 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.60 71.24 0.68 0.00 16 2 C -0.09 -1.32 5.88 -19.87 -0.12 -1.43 16 3 C 0.00 0.00 9.21 22.27 0.21 0.21 16 4 C -0.08 -1.99 6.85 36.37 0.25 -1.74 16 5 N 0.03 0.89 4.45 -46.45 -0.21 0.69 16 6 O -0.14 -3.75 18.45 18.88 0.35 -3.40 16 7 O -0.20 -6.47 18.45 18.90 0.35 -6.12 16 8 C 0.03 0.71 9.06 22.27 0.20 0.91 16 9 C -0.68 -16.54 5.87 22.27 0.13 -16.41 16 10 S 2.71 76.91 4.93 -56.49 -0.28 76.64 16 11 O -0.96 -27.74 16.38 -128.00 -2.10 -29.83 16 12 O -0.98 -34.96 16.44 -128.00 -2.10 -37.06 16 13 N -1.10 -32.02 4.91 -187.49 -0.92 -32.94 16 14 C 0.13 4.77 6.17 86.38 0.53 5.30 16 15 C 0.02 1.02 5.12 29.85 0.15 1.17 16 16 C -0.54 -28.74 9.11 25.60 0.23 -28.51 16 17 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 18 C 0.01 0.47 5.46 84.66 0.46 0.93 16 19 N -0.93 -52.94 13.29 21.45 0.28 -52.66 16 20 Si 0.96 42.32 29.54 68.60 2.03 44.35 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 C 0.07 1.27 5.87 -19.86 -0.12 1.15 16 25 C -0.16 -2.22 8.38 71.24 0.60 -1.62 16 26 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.09 0.32 8.09 -2.39 -0.02 0.30 16 28 H 0.10 0.36 6.01 -2.39 -0.01 0.34 16 29 H 0.19 2.06 7.61 -2.91 -0.02 2.04 16 30 H 0.16 4.50 6.89 -2.91 -0.02 4.48 16 31 H 0.43 10.90 8.26 -96.75 -0.80 10.10 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.41 7.73 -2.39 -0.02 2.39 16 34 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 0.96 6.11 -2.39 -0.01 0.95 16 39 H 0.07 1.12 4.87 -2.39 -0.01 1.11 16 Total: -1.00 -71.41 347.07 0.93 -70.48 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.31 Total: 9.90 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 3.22 Total: -40.04 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -0.84 Total: -84.91 kcal Atomic # 8 Polarization: -72.91 SS G_CDS: -3.50 Total: -76.41 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 76.91 SS G_CDS: -0.28 Total: 76.64 kcal Total: -71.41 0.93 -70.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.190 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds