Wall clock time and date at job start Tue Mar 31 2020 15:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00276 * 2 1 4 4 C 1.38213 * 120.00475 * 179.83242 * 3 2 1 5 5 N 1.48021 * 120.00615 * 180.22795 * 4 3 2 6 6 O 1.21802 * 119.99339 * 353.11708 * 5 4 3 7 7 O 1.21802 * 120.00369 * 173.11343 * 5 4 3 8 8 C 1.38257 * 119.99894 * 0.44558 * 4 3 2 9 9 S 1.76199 * 120.00322 * 179.78489 * 8 4 3 10 10 O 1.42092 * 106.40202 * 308.94728 * 9 8 4 11 11 O 1.42103 * 106.40300 * 176.02795 * 9 8 4 12 12 N 1.65605 * 107.21644 * 62.49055 * 9 8 4 13 13 C 1.46500 * 120.00057 * 62.26499 * 12 9 8 14 14 C 1.53001 * 109.47142 * 164.96836 * 13 12 9 15 15 C 1.50702 * 109.47123 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99683 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99630 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00106 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47056 * 89.99872 * 19 17 15 21 21 H 1.48504 * 109.46649 * 209.99487 * 19 17 15 22 22 H 1.48496 * 109.47056 * 329.99121 * 19 17 15 23 23 C 1.38220 * 119.99638 * 359.51167 * 8 4 3 24 24 C 1.38218 * 120.00010 * 180.02562 * 2 1 3 25 25 C 1.50700 * 119.99757 * 359.97438 * 24 2 1 26 26 H 1.08990 * 109.47415 * 269.97729 * 1 2 3 27 27 H 1.08999 * 109.47085 * 29.97965 * 1 2 3 28 28 H 1.09004 * 109.46989 * 149.97522 * 1 2 3 29 29 H 1.08006 * 119.99913 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99797 * 242.54117 * 12 9 8 31 31 H 1.08997 * 109.47089 * 284.97413 * 13 12 9 32 32 H 1.09006 * 109.46764 * 44.96956 * 13 12 9 33 33 H 1.08995 * 109.47086 * 300.00269 * 14 13 12 34 34 H 1.09003 * 109.46711 * 60.00320 * 14 13 12 35 35 H 0.96995 * 119.99558 * 180.02562 * 18 17 15 36 36 H 1.08001 * 119.99946 * 180.25428 * 23 8 4 37 37 H 1.09000 * 109.46686 * 269.97426 * 25 24 2 38 38 H 1.08997 * 109.47346 * 29.98195 * 25 24 2 39 39 H 1.09005 * 109.46519 * 149.98507 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0035 5 7 4.3206 2.4792 0.0086 6 8 3.7184 3.5305 -0.1167 7 8 5.5317 2.4826 0.1382 8 6 4.2717 0.0000 -0.0023 9 16 6.0337 0.0000 -0.0036 10 8 6.4342 0.8615 -1.0602 11 8 6.4350 -1.3604 0.0845 12 7 6.5249 0.7244 1.4023 13 6 6.1787 0.1266 2.6942 14 6 7.0417 0.7507 3.7926 15 6 6.6850 0.1362 5.1217 16 1 5.9197 -0.6239 5.1772 17 6 7.3365 0.5435 6.2665 18 7 7.0249 0.0076 7.4264 19 14 8.6607 1.8576 6.1702 20 1 8.0428 3.1967 6.3435 21 1 9.6613 1.6314 7.2441 22 1 9.3309 1.7890 4.8469 23 6 3.5806 -1.1970 -0.0014 24 6 2.1981 -1.1970 -0.0005 25 6 1.4445 -2.5021 -0.0005 26 1 -0.3634 -0.0004 1.0275 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1327 -0.0004 30 1 7.0385 1.5467 1.3704 31 1 5.1263 0.3115 2.9097 32 1 6.3586 -0.9479 2.6572 33 1 8.0939 0.5658 3.5771 34 1 6.8617 1.8251 3.8296 35 1 7.4830 0.2944 8.2318 36 1 4.1206 -2.1323 -0.0018 37 1 1.2637 -2.8171 1.0272 38 1 0.4918 -2.3715 -0.5137 39 1 2.0334 -3.2615 -0.5150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:14 Heat of formation + Delta-G solvation = -46.132658 kcal Electronic energy + Delta-G solvation = -26646.327210 eV Core-core repulsion = 22684.844217 eV Total energy + Delta-G solvation = -3961.482993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42726 -40.23856 -37.30978 -36.62201 -35.75158 -35.50466 -34.46199 -33.08065 -32.68541 -29.69054 -29.16707 -28.05594 -25.45377 -24.57712 -23.18464 -22.07932 -20.87279 -19.89869 -18.97546 -18.86525 -17.72809 -17.47035 -16.96396 -16.80417 -16.62007 -15.48645 -15.01695 -14.99858 -14.96629 -14.22240 -14.21214 -14.02304 -13.42372 -13.39931 -12.97856 -12.81596 -12.63593 -12.32895 -12.27525 -12.14383 -11.99963 -11.96814 -11.71849 -11.51437 -11.41414 -11.35383 -11.15031 -10.97184 -10.45625 -10.05501 -9.91101 -9.83400 -9.67158 -9.34582 -8.99607 -8.60042 -6.11642 -4.11735 -0.62234 0.21778 0.44658 1.07124 1.11225 2.60422 3.10894 3.29710 3.37485 3.41570 3.66656 3.84883 3.92869 4.17102 4.21794 4.40596 4.46383 4.68899 4.79310 4.89254 4.92062 5.09301 5.12481 5.15127 5.22875 5.27430 5.36694 5.43549 5.62803 5.70245 5.91590 5.99185 6.19357 6.25529 6.48668 7.14610 7.24043 7.31275 7.56829 7.69949 8.41515 8.90076 9.49556 11.01160 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004240 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.311077 B = 6602.220215 C = 7046.946333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.041 4.041 3 C -0.066 4.066 4 C 0.043 3.957 5 N 0.018 4.982 6 O -0.142 6.142 7 O -0.137 6.137 8 C -0.628 4.628 9 S 2.697 3.303 10 O -0.945 6.945 11 O -0.954 6.954 12 N -1.095 6.095 13 C 0.125 3.875 14 C -0.017 4.017 15 C -0.525 4.525 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.014 4.014 24 C -0.058 4.058 25 C -0.127 4.127 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.426 0.574 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.745 -2.159 -17.374 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.042 4.042 3 C -0.086 4.086 4 C -0.040 4.040 5 N 0.538 4.462 6 O -0.360 6.360 7 O -0.352 6.352 8 C -0.710 4.710 9 S 2.779 3.221 10 O -0.935 6.935 11 O -0.944 6.944 12 N -0.861 5.861 13 C 0.000 4.000 14 C -0.056 4.056 15 C -0.564 4.564 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.538 5.538 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.034 4.034 24 C -0.059 4.059 25 C -0.183 4.183 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.178 0.822 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.184 0.816 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.695 -3.290 -17.836 23.343 hybrid contribution 0.329 1.632 0.503 1.739 sum -14.366 -1.659 -17.333 22.574 Atomic orbital electron populations 1.21037 0.88786 1.04281 1.03973 1.20039 0.97419 0.91194 0.95548 1.21007 0.90856 1.00564 0.96159 1.20451 0.92648 0.82536 1.08345 1.43621 1.01303 1.02660 0.98572 1.94520 1.69945 1.19353 1.52134 1.94501 0.95730 1.93050 1.51886 1.31331 1.31147 0.96323 1.12185 1.02157 0.72708 0.73607 0.73586 1.93626 1.79729 1.66233 1.53877 1.93594 1.78955 1.35089 1.86725 1.55518 1.68697 1.41005 1.20873 1.21459 0.99153 0.97846 0.81505 1.19752 0.95821 0.96441 0.93610 1.20937 1.22468 1.23395 0.89567 0.90794 1.24978 0.96721 0.96258 0.95202 1.69901 1.42380 1.43007 0.98542 0.86778 0.82062 0.82193 0.78320 1.20176 1.21266 1.18687 1.21044 0.93903 0.96658 0.91788 1.20369 0.93756 0.96220 0.95547 1.21063 1.00436 0.92773 1.04061 0.89364 0.90305 0.89792 0.82205 0.73640 0.93251 0.90661 0.95254 0.96076 0.92563 0.81581 0.89252 0.90036 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.60 36.00 0.35 -0.23 16 2 C -0.04 -0.34 5.88 -104.63 -0.62 -0.96 16 3 C -0.07 -0.70 9.21 -39.59 -0.36 -1.07 16 4 C 0.04 0.61 6.80 -79.95 -0.54 0.06 16 5 N 0.02 0.30 4.45 33.96 0.15 0.45 16 6 O -0.14 -2.22 18.47 -29.46 -0.54 -2.76 16 7 O -0.14 -2.39 11.73 -37.28 -0.44 -2.83 16 8 C -0.63 -8.80 5.82 -39.58 -0.23 -9.03 16 9 S 2.70 44.06 4.90 -107.50 -0.53 43.53 16 10 O -0.94 -17.22 15.36 -67.23 -1.03 -18.25 16 11 O -0.95 -16.78 16.54 -57.17 -0.95 -17.72 16 12 N -1.10 -18.85 4.66 -10.61 -0.05 -18.90 16 13 C 0.13 2.43 6.13 -4.04 -0.02 2.40 16 14 C -0.02 -0.40 4.18 -27.88 -0.12 -0.51 16 15 C -0.53 -14.51 9.66 -34.44 -0.33 -14.84 16 16 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 19 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 23 C -0.01 -0.16 9.20 -39.58 -0.36 -0.53 16 24 C -0.06 -0.50 5.88 -104.62 -0.62 -1.12 16 25 C -0.13 -0.66 9.61 36.01 0.35 -0.32 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 28 H 0.08 0.25 5.95 -51.93 -0.31 -0.05 16 29 H 0.16 1.36 7.63 -52.48 -0.40 0.96 16 30 H 0.43 6.98 7.43 -34.47 -0.26 6.72 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.44 7.82 -51.93 -0.41 1.03 16 33 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 34 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.17 1.62 7.34 -52.49 -0.39 1.24 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.27 5.95 -51.93 -0.31 -0.04 16 39 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -35.08 339.51 -9.30 -44.39 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.53 Total: 0.88 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.61 Total: -24.23 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.88 Total: -44.86 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -2.96 Total: -41.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 44.06 SS G_CDS: -0.53 Total: 43.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.08 -9.30 -44.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.745 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds