Wall clock time and date at job start Tue Mar 31 2020 15:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00276 * 2 1 4 4 C 1.38213 * 120.00475 * 179.83242 * 3 2 1 5 5 N 1.48021 * 120.00615 * 180.22795 * 4 3 2 6 6 O 1.21802 * 119.99339 * 353.11708 * 5 4 3 7 7 O 1.21802 * 120.00369 * 173.11343 * 5 4 3 8 8 C 1.38257 * 119.99894 * 0.44558 * 4 3 2 9 9 S 1.76199 * 120.00322 * 179.78489 * 8 4 3 10 10 O 1.42092 * 106.40202 * 308.94728 * 9 8 4 11 11 O 1.42103 * 106.40300 * 176.02795 * 9 8 4 12 12 N 1.65605 * 107.21644 * 62.49055 * 9 8 4 13 13 C 1.46500 * 120.00057 * 62.26499 * 12 9 8 14 14 C 1.53001 * 109.47142 * 164.96836 * 13 12 9 15 15 C 1.50702 * 109.47123 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99683 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99630 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00106 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47056 * 89.99872 * 19 17 15 21 21 H 1.48504 * 109.46649 * 209.99487 * 19 17 15 22 22 H 1.48496 * 109.47056 * 329.99121 * 19 17 15 23 23 C 1.38220 * 119.99638 * 359.51167 * 8 4 3 24 24 C 1.38218 * 120.00010 * 180.02562 * 2 1 3 25 25 C 1.50700 * 119.99757 * 359.97438 * 24 2 1 26 26 H 1.08990 * 109.47415 * 269.97729 * 1 2 3 27 27 H 1.08999 * 109.47085 * 29.97965 * 1 2 3 28 28 H 1.09004 * 109.46989 * 149.97522 * 1 2 3 29 29 H 1.08006 * 119.99913 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99797 * 242.54117 * 12 9 8 31 31 H 1.08997 * 109.47089 * 284.97413 * 13 12 9 32 32 H 1.09006 * 109.46764 * 44.96956 * 13 12 9 33 33 H 1.08995 * 109.47086 * 300.00269 * 14 13 12 34 34 H 1.09003 * 109.46711 * 60.00320 * 14 13 12 35 35 H 0.96995 * 119.99558 * 180.02562 * 18 17 15 36 36 H 1.08001 * 119.99946 * 180.25428 * 23 8 4 37 37 H 1.09000 * 109.46686 * 269.97426 * 25 24 2 38 38 H 1.08997 * 109.47346 * 29.98195 * 25 24 2 39 39 H 1.09005 * 109.46519 * 149.98507 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0035 5 7 4.3206 2.4792 0.0086 6 8 3.7184 3.5305 -0.1167 7 8 5.5317 2.4826 0.1382 8 6 4.2717 0.0000 -0.0023 9 16 6.0337 0.0000 -0.0036 10 8 6.4342 0.8615 -1.0602 11 8 6.4350 -1.3604 0.0845 12 7 6.5249 0.7244 1.4023 13 6 6.1787 0.1266 2.6942 14 6 7.0417 0.7507 3.7926 15 6 6.6850 0.1362 5.1217 16 1 5.9197 -0.6239 5.1772 17 6 7.3365 0.5435 6.2665 18 7 7.0249 0.0076 7.4264 19 14 8.6607 1.8576 6.1702 20 1 8.0428 3.1967 6.3435 21 1 9.6613 1.6314 7.2441 22 1 9.3309 1.7890 4.8469 23 6 3.5806 -1.1970 -0.0014 24 6 2.1981 -1.1970 -0.0005 25 6 1.4445 -2.5021 -0.0005 26 1 -0.3634 -0.0004 1.0275 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1327 -0.0004 30 1 7.0385 1.5467 1.3704 31 1 5.1263 0.3115 2.9097 32 1 6.3586 -0.9479 2.6572 33 1 8.0939 0.5658 3.5771 34 1 6.8617 1.8251 3.8296 35 1 7.4830 0.2944 8.2318 36 1 4.1206 -2.1323 -0.0018 37 1 1.2637 -2.8171 1.0272 38 1 0.4918 -2.3715 -0.5137 39 1 2.0334 -3.2615 -0.5150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:13 Heat of formation + Delta-G solvation = -70.220413 kcal Electronic energy + Delta-G solvation = -26647.371734 eV Core-core repulsion = 22684.844217 eV Total energy + Delta-G solvation = -3962.527516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55921 -41.05255 -38.61575 -37.87644 -37.10693 -37.07862 -35.22944 -34.73550 -33.81924 -31.55380 -29.93694 -28.70084 -26.52293 -26.27005 -23.94938 -23.14045 -22.60435 -21.04676 -20.18378 -20.04577 -19.07065 -18.88442 -18.48146 -18.02121 -17.67464 -16.73465 -16.27687 -15.88238 -15.79958 -15.76846 -15.51091 -15.50409 -14.64965 -13.94561 -13.73340 -13.71364 -13.64665 -13.57537 -13.46907 -13.38251 -13.33529 -13.17406 -13.01603 -12.84118 -12.70593 -12.45371 -12.39155 -12.25917 -12.02581 -11.83367 -11.81506 -11.48349 -10.79406 -10.70840 -10.43202 -10.38979 -8.31027 -6.35902 -1.65058 -0.85180 -0.57363 0.04718 0.07738 1.37571 1.39617 1.51044 1.69814 1.90820 2.35720 2.46409 2.89754 3.04973 3.22915 3.43097 3.50586 3.63048 3.74820 4.06404 4.10914 4.21232 4.36305 4.40124 4.42549 4.59758 4.63227 4.74707 4.79029 4.79570 4.85029 5.06337 5.07001 5.16827 5.31590 5.39587 5.45017 5.58783 6.01004 6.22190 6.32887 6.70540 7.28917 8.84837 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004240 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.311077 B = 6602.220215 C = 7046.946333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.030 4.030 3 C -0.063 4.063 4 C 0.015 3.985 5 N 0.017 4.983 6 O -0.131 6.131 7 O -0.185 6.185 8 C -0.648 4.648 9 S 2.712 3.288 10 O -0.969 6.969 11 O -0.975 6.975 12 N -1.098 6.098 13 C 0.137 3.863 14 C -0.017 4.017 15 C -0.532 4.532 16 H 0.043 0.957 17 C 0.012 3.988 18 N -0.945 5.945 19 Si 0.943 3.057 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.246 1.246 23 C -0.023 4.023 24 C -0.049 4.049 25 C -0.130 4.130 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.181 0.819 30 H 0.428 0.572 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.267 0.733 36 H 0.176 0.824 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 -2.273 -18.542 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.031 4.031 3 C -0.083 4.083 4 C -0.069 4.069 5 N 0.533 4.467 6 O -0.355 6.355 7 O -0.389 6.389 8 C -0.734 4.734 9 S 2.799 3.201 10 O -0.959 6.959 11 O -0.965 6.965 12 N -0.862 5.862 13 C 0.012 3.988 14 C -0.056 4.056 15 C -0.571 4.571 16 H 0.061 0.939 17 C -0.185 4.185 18 N -0.586 5.586 19 Si 0.766 3.234 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.169 1.169 23 C -0.043 4.043 24 C -0.050 4.050 25 C -0.185 4.185 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.198 0.802 30 H 0.266 0.734 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.193 0.807 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.964 -3.424 -19.012 25.709 hybrid contribution 0.763 1.555 0.824 1.918 sum -16.201 -1.869 -18.188 24.429 Atomic orbital electron populations 1.21222 0.85425 1.06217 1.05204 1.20580 0.99539 0.90007 0.92960 1.21459 0.89458 1.02559 0.94814 1.20650 0.93740 0.81140 1.11328 1.43966 1.01272 1.03490 0.97989 1.94467 1.69674 1.20310 1.51038 1.94492 0.96662 1.93388 1.54409 1.30810 1.29174 0.97672 1.15709 1.01316 0.73467 0.72622 0.72731 1.93589 1.81115 1.66760 1.54421 1.93560 1.80314 1.35779 1.86808 1.55395 1.69542 1.40987 1.20266 1.21146 0.98728 0.97510 0.81455 1.19680 0.96582 0.96707 0.92624 1.21258 1.21450 1.22612 0.91783 0.93870 1.25877 0.99229 0.98678 0.94764 1.70035 1.44109 1.44981 0.99446 0.85761 0.79196 0.79319 0.79074 1.19266 1.20919 1.16949 1.21381 0.95458 0.95944 0.91482 1.20845 0.92771 0.98234 0.93149 1.21249 1.01316 0.90798 1.05152 0.88126 0.88926 0.87442 0.80203 0.73393 0.92692 0.90817 0.94970 0.95336 0.92360 0.80717 0.88221 0.87268 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.53 9.60 71.23 0.68 0.15 16 2 C -0.03 -0.39 5.88 -19.87 -0.12 -0.51 16 3 C -0.06 -1.20 9.21 22.27 0.21 -0.99 16 4 C 0.01 0.41 6.80 36.37 0.25 0.65 16 5 N 0.02 0.56 4.45 -46.46 -0.21 0.35 16 6 O -0.13 -4.07 18.47 18.88 0.35 -3.72 16 7 O -0.19 -6.70 11.73 26.36 0.31 -6.39 16 8 C -0.65 -18.01 5.82 22.27 0.13 -17.89 16 9 S 2.71 90.92 4.90 -56.49 -0.28 90.64 16 10 O -0.97 -36.65 15.36 -118.38 -1.82 -38.47 16 11 O -0.97 -34.98 16.54 -128.00 -2.12 -37.10 16 12 N -1.10 -38.64 4.66 -187.48 -0.87 -39.51 16 13 C 0.14 5.39 6.13 86.38 0.53 5.92 16 14 C -0.02 -0.78 4.18 29.85 0.12 -0.66 16 15 C -0.53 -29.96 9.66 25.60 0.25 -29.71 16 16 H 0.04 2.62 7.99 -2.91 -0.02 2.59 16 17 C 0.01 0.71 5.47 84.65 0.46 1.17 16 18 N -0.95 -58.23 13.96 21.45 0.30 -57.94 16 19 Si 0.94 43.99 27.47 68.60 1.88 45.87 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 23 C -0.02 -0.49 9.20 22.27 0.20 -0.28 16 24 C -0.05 -0.70 5.88 -19.86 -0.12 -0.81 16 25 C -0.13 -0.80 9.61 71.24 0.68 -0.11 16 26 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.09 0.22 8.09 -2.39 -0.02 0.20 16 28 H 0.11 0.01 5.95 -2.39 -0.01 0.00 16 29 H 0.18 2.56 7.63 -2.91 -0.02 2.53 16 30 H 0.43 14.48 7.43 -96.74 -0.72 13.76 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.88 7.82 -2.38 -0.02 2.86 16 33 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 34 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.18 3.25 7.34 -2.91 -0.02 3.23 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 0.11 5.95 -2.39 -0.01 0.09 16 39 H 0.09 0.46 8.09 -2.38 -0.02 0.44 16 Total: -1.00 -78.33 339.51 1.16 -77.16 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.33 Total: 12.16 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.29 Total: -43.06 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -0.78 Total: -97.10 kcal Atomic # 8 Polarization: -82.40 SS G_CDS: -3.28 Total: -85.68 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Atomic # 16 Polarization: 90.92 SS G_CDS: -0.28 Total: 90.64 kcal Total: -78.33 1.16 -77.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.941 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds