Wall clock time and date at job start Tue Mar 31 2020 16:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 H 1.08997 * 109.47078 * 182.80276 * 3 2 1 5 5 C 1.50699 * 109.47162 * 302.80139 * 3 2 1 6 6 H 1.08007 * 119.99805 * 120.00190 * 5 3 2 7 7 C 1.37874 * 120.00353 * 300.00092 * 5 3 2 8 8 N 1.31519 * 119.99811 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00326 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46848 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47330 * 119.99720 * 9 7 5 12 12 H 1.48494 * 109.47149 * 239.99825 * 9 7 5 13 13 N 1.46503 * 109.47068 * 62.79966 * 3 2 1 14 14 S 1.65606 * 119.99427 * 98.45411 * 13 3 2 15 15 O 1.42097 * 106.40686 * 308.46319 * 14 13 3 16 16 O 1.42099 * 106.39861 * 175.54682 * 14 13 3 17 17 C 1.76197 * 107.21863 * 62.00930 * 14 13 3 18 18 C 1.38266 * 119.99889 * 266.79665 * 17 14 13 19 19 C 1.50696 * 119.99619 * 0.02562 * 18 17 14 20 20 C 1.38211 * 119.99873 * 180.22632 * 18 17 14 21 21 C 1.38252 * 120.00071 * 359.81591 * 20 18 17 22 22 C 1.38214 * 120.00336 * 359.97438 * 21 20 18 23 23 C 1.38216 * 120.00140 * 86.60741 * 17 14 13 24 24 N 1.48011 * 120.00025 * 359.97438 * 23 17 14 25 25 O 1.21796 * 120.00112 * 316.72445 * 24 23 17 26 26 O 1.21798 * 120.00075 * 136.44047 * 24 23 17 27 27 H 1.09002 * 109.47071 * 66.56536 * 1 2 3 28 28 H 1.08999 * 109.47424 * 186.57000 * 1 2 3 29 29 H 1.09003 * 109.46676 * 306.57157 * 1 2 3 30 30 H 1.09006 * 109.46737 * 240.00347 * 2 1 3 31 31 H 1.08992 * 109.47051 * 120.00320 * 2 1 3 32 32 H 0.96993 * 119.99595 * 180.02562 * 8 7 5 33 33 H 0.96993 * 120.00098 * 278.45535 * 13 3 2 34 34 H 1.09001 * 109.47075 * 270.19964 * 19 18 17 35 35 H 1.08996 * 109.47665 * 30.20678 * 19 18 17 36 36 H 1.09005 * 109.46655 * 150.20921 * 19 18 17 37 37 H 1.08002 * 119.99710 * 179.79008 * 20 18 17 38 38 H 1.08000 * 120.00345 * 179.97438 * 21 20 18 39 39 H 1.07997 * 120.00273 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1288 1.4429 -0.0502 5 6 1.4818 2.1727 -1.1943 6 1 0.8664 3.0489 -1.0523 7 6 1.7566 1.7223 -2.4681 8 7 2.5063 0.6556 -2.6409 9 14 1.0652 2.6278 -3.9484 10 1 0.2601 3.7874 -3.4876 11 1 2.1822 3.1077 -4.8012 12 1 0.2033 1.7079 -4.7332 13 7 1.6075 2.1134 1.2285 14 16 2.6493 2.2486 2.5087 15 8 3.1468 0.9417 2.7611 16 8 1.9799 3.0282 3.4901 17 6 4.0234 3.2075 1.9639 18 6 5.1487 2.5801 1.4619 19 6 5.1995 1.0763 1.3802 20 6 6.2284 3.3322 1.0389 21 6 6.1818 4.7119 1.1142 22 6 5.0553 5.3392 1.6120 23 6 3.9750 4.5870 2.0347 24 7 2.7686 5.2588 2.5677 25 8 1.6613 4.8757 2.2353 26 8 2.8831 6.1913 3.3428 27 1 -0.3633 0.4087 -0.9429 28 1 -0.3634 -1.0209 0.1176 29 1 -0.3633 0.6123 0.8254 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.6999 0.3390 -3.5370 33 1 0.7111 2.4783 1.2920 34 1 5.6092 0.6757 2.3074 35 1 4.1929 0.6863 1.2293 36 1 5.8333 0.7791 0.5447 37 1 7.1086 2.8420 0.6499 38 1 7.0256 5.2995 0.7841 39 1 5.0191 6.4170 1.6712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:14 Heat of formation + Delta-G solvation = -39.704956 kcal Electronic energy + Delta-G solvation = -27984.190163 eV Core-core repulsion = 24022.985896 eV Total energy + Delta-G solvation = -3961.204267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00070 -39.61607 -37.15477 -36.31855 -35.99132 -35.56071 -33.24949 -32.27793 -32.11083 -30.36363 -27.36944 -26.53080 -26.38069 -23.68699 -23.24180 -21.91277 -20.14647 -19.32819 -18.61063 -18.47214 -17.71397 -17.31667 -17.19471 -16.31859 -15.78255 -15.42157 -15.18367 -14.59884 -14.05975 -13.99887 -13.64862 -13.25698 -13.06192 -12.86467 -12.54589 -12.42062 -12.27992 -12.13276 -11.79882 -11.66446 -11.40533 -11.33301 -11.08839 -10.96694 -10.89382 -10.66681 -10.63307 -10.48259 -10.36887 -10.06854 -9.85468 -9.67892 -9.30201 -9.20099 -8.66188 -8.32327 -6.20689 -4.26179 -0.06814 0.56563 0.76285 1.24371 1.46803 2.96031 3.17928 3.27592 3.31562 3.48033 4.03541 4.11020 4.29430 4.39362 4.58397 4.68987 4.89435 5.05791 5.11526 5.22229 5.40747 5.49947 5.74981 5.80811 6.02943 6.11004 6.15520 6.38509 6.45893 6.50937 6.56742 6.61069 6.96240 7.19742 7.38342 7.45772 7.62669 7.75117 7.85302 7.95407 8.20186 8.77422 9.39275 10.84899 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.006106 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.937245 B = 4584.759148 C = 4835.357880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.134 4.134 3 C 0.271 3.729 4 H 0.043 0.957 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.282 1.282 13 N -1.080 6.080 14 S 2.679 3.321 15 O -0.949 6.949 16 O -0.967 6.967 17 C -0.634 4.634 18 C 0.039 3.961 19 C -0.155 4.155 20 C -0.103 4.103 21 C -0.062 4.062 22 C -0.093 4.093 23 C 0.064 3.936 24 N 0.015 4.985 25 O -0.103 6.103 26 O -0.159 6.159 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.418 0.582 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 3.755 5.161 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.061 0.939 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.844 5.844 14 S 2.763 3.237 15 O -0.939 6.939 16 O -0.957 6.957 17 C -0.717 4.717 18 C 0.037 3.963 19 C -0.211 4.211 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.113 4.113 23 C -0.018 4.018 24 N 0.542 4.458 25 O -0.331 6.331 26 O -0.372 6.372 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.255 0.745 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.150 2.954 5.585 11.119 hybrid contribution -0.464 1.389 -1.363 2.001 sum 8.686 4.342 4.222 10.589 Atomic orbital electron populations 1.21525 0.97406 0.98151 1.01424 1.21953 0.95489 0.98483 1.01412 1.18751 0.94902 0.89469 0.80129 0.93937 1.21307 1.32371 1.12269 0.89778 0.91422 1.24856 0.94997 0.94953 0.98785 1.69862 1.37322 1.23009 1.22368 0.86502 0.78916 0.79950 0.82505 1.19569 1.21138 1.20809 1.55416 1.25399 1.71667 1.31890 1.02524 0.73091 0.74227 0.73863 1.93594 1.80701 1.35805 1.83779 1.93618 1.72450 1.71335 1.58265 1.31029 1.20983 1.04194 1.15494 1.19827 0.90049 0.97815 0.88568 1.21707 1.07859 0.87796 1.03692 1.21608 0.98832 0.93941 0.97807 1.21380 0.96851 0.94938 0.94907 1.20949 0.91299 1.01154 0.97886 1.20445 0.87422 0.91611 1.02363 1.43483 1.02224 1.00472 0.99648 1.94577 1.11523 1.66530 1.60445 1.94493 1.93312 1.20126 1.29312 0.92125 0.95657 0.94567 0.88279 0.95075 0.92679 0.74533 0.88781 0.86725 0.89914 0.83351 0.83180 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.44 37.16 0.35 -2.24 16 2 C -0.13 -2.93 5.65 -26.73 -0.15 -3.08 16 3 C 0.27 6.03 2.18 -69.08 -0.15 5.87 16 4 H 0.04 0.97 5.18 -51.93 -0.27 0.70 16 5 C -0.52 -12.60 7.51 -34.44 -0.26 -12.86 16 6 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -22.49 11.35 55.43 0.63 -21.86 16 9 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -1.08 -21.65 4.53 -5.88 -0.03 -21.67 16 14 S 2.68 51.86 4.63 -107.50 -0.50 51.36 16 15 O -0.95 -18.72 13.75 -57.18 -0.79 -19.51 16 16 O -0.97 -20.50 14.33 -67.11 -0.96 -21.46 16 17 C -0.63 -11.20 5.66 -39.58 -0.22 -11.43 16 18 C 0.04 0.60 5.56 -104.62 -0.58 0.02 16 19 C -0.15 -2.30 7.95 36.00 0.29 -2.01 16 20 C -0.10 -1.21 9.70 -39.59 -0.38 -1.59 16 21 C -0.06 -0.66 10.05 -39.59 -0.40 -1.05 16 22 C -0.09 -1.23 9.73 -39.58 -0.39 -1.61 16 23 C 0.06 1.10 6.36 -79.95 -0.51 0.59 16 24 N 0.02 0.29 3.50 33.96 0.12 0.41 16 25 O -0.10 -2.12 15.30 -37.18 -0.57 -2.68 16 26 O -0.16 -2.98 19.05 -29.46 -0.56 -3.54 16 27 H 0.06 1.30 7.39 -51.93 -0.38 0.92 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.68 7.16 -51.93 -0.37 0.31 16 30 H 0.10 2.37 6.15 -51.93 -0.32 2.05 16 31 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 32 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 33 H 0.42 7.99 8.37 -34.48 -0.29 7.70 16 34 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.11 2.04 3.48 -51.93 -0.18 1.86 16 36 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -29.91 332.72 -9.46 -39.38 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.30 Total: 7.62 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.50 Total: -27.83 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.72 Total: -43.13 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -2.88 Total: -47.19 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -0.50 Total: 51.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.91 -9.46 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.329 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds