Wall clock time and date at job start Tue Mar 31 2020 16:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 H 1.08997 * 109.47078 * 182.80276 * 3 2 1 5 5 C 1.50699 * 109.47162 * 302.80139 * 3 2 1 6 6 H 1.08007 * 119.99805 * 120.00190 * 5 3 2 7 7 C 1.37874 * 120.00353 * 300.00092 * 5 3 2 8 8 N 1.31519 * 119.99811 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00326 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46848 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47330 * 119.99720 * 9 7 5 12 12 H 1.48494 * 109.47149 * 239.99825 * 9 7 5 13 13 N 1.46503 * 109.47068 * 62.79966 * 3 2 1 14 14 S 1.65606 * 119.99427 * 98.45411 * 13 3 2 15 15 O 1.42097 * 106.40686 * 308.46319 * 14 13 3 16 16 O 1.42099 * 106.39861 * 175.54682 * 14 13 3 17 17 C 1.76197 * 107.21863 * 62.00930 * 14 13 3 18 18 C 1.38266 * 119.99889 * 266.79665 * 17 14 13 19 19 C 1.50696 * 119.99619 * 0.02562 * 18 17 14 20 20 C 1.38211 * 119.99873 * 180.22632 * 18 17 14 21 21 C 1.38252 * 120.00071 * 359.81591 * 20 18 17 22 22 C 1.38214 * 120.00336 * 359.97438 * 21 20 18 23 23 C 1.38216 * 120.00140 * 86.60741 * 17 14 13 24 24 N 1.48011 * 120.00025 * 359.97438 * 23 17 14 25 25 O 1.21796 * 120.00112 * 316.72445 * 24 23 17 26 26 O 1.21798 * 120.00075 * 136.44047 * 24 23 17 27 27 H 1.09002 * 109.47071 * 66.56536 * 1 2 3 28 28 H 1.08999 * 109.47424 * 186.57000 * 1 2 3 29 29 H 1.09003 * 109.46676 * 306.57157 * 1 2 3 30 30 H 1.09006 * 109.46737 * 240.00347 * 2 1 3 31 31 H 1.08992 * 109.47051 * 120.00320 * 2 1 3 32 32 H 0.96993 * 119.99595 * 180.02562 * 8 7 5 33 33 H 0.96993 * 120.00098 * 278.45535 * 13 3 2 34 34 H 1.09001 * 109.47075 * 270.19964 * 19 18 17 35 35 H 1.08996 * 109.47665 * 30.20678 * 19 18 17 36 36 H 1.09005 * 109.46655 * 150.20921 * 19 18 17 37 37 H 1.08002 * 119.99710 * 179.79008 * 20 18 17 38 38 H 1.08000 * 120.00345 * 179.97438 * 21 20 18 39 39 H 1.07997 * 120.00273 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1288 1.4429 -0.0502 5 6 1.4818 2.1727 -1.1943 6 1 0.8664 3.0489 -1.0523 7 6 1.7566 1.7223 -2.4681 8 7 2.5063 0.6556 -2.6409 9 14 1.0652 2.6278 -3.9484 10 1 0.2601 3.7874 -3.4876 11 1 2.1822 3.1077 -4.8012 12 1 0.2033 1.7079 -4.7332 13 7 1.6075 2.1134 1.2285 14 16 2.6493 2.2486 2.5087 15 8 3.1468 0.9417 2.7611 16 8 1.9799 3.0282 3.4901 17 6 4.0234 3.2075 1.9639 18 6 5.1487 2.5801 1.4619 19 6 5.1995 1.0763 1.3802 20 6 6.2284 3.3322 1.0389 21 6 6.1818 4.7119 1.1142 22 6 5.0553 5.3392 1.6120 23 6 3.9750 4.5870 2.0347 24 7 2.7686 5.2588 2.5677 25 8 1.6613 4.8757 2.2353 26 8 2.8831 6.1913 3.3428 27 1 -0.3633 0.4087 -0.9429 28 1 -0.3634 -1.0209 0.1176 29 1 -0.3633 0.6123 0.8254 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.6999 0.3390 -3.5370 33 1 0.7111 2.4783 1.2920 34 1 5.6092 0.6757 2.3074 35 1 4.1929 0.6863 1.2293 36 1 5.8333 0.7791 0.5447 37 1 7.1086 2.8420 0.6499 38 1 7.0256 5.2995 0.7841 39 1 5.0191 6.4170 1.6712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:13 Heat of formation + Delta-G solvation = -58.092858 kcal Electronic energy + Delta-G solvation = -27984.987522 eV Core-core repulsion = 24022.985896 eV Total energy + Delta-G solvation = -3962.001626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.37642 -40.71261 -38.69255 -37.88071 -37.57192 -37.11417 -34.37269 -34.10145 -33.19983 -32.05625 -28.54935 -28.22113 -27.73202 -25.43796 -24.38891 -23.13490 -21.87095 -20.72589 -19.94069 -19.88724 -19.24138 -18.72038 -18.52542 -18.01725 -17.17592 -16.83465 -16.44862 -16.13881 -15.46212 -15.11939 -15.11626 -14.91094 -14.55965 -14.14540 -13.95401 -13.86708 -13.59045 -13.47926 -13.21330 -13.17725 -12.91212 -12.81545 -12.78190 -12.57126 -12.41981 -12.33067 -12.18407 -12.12035 -11.84899 -11.68329 -11.43498 -11.02950 -10.88643 -10.52013 -10.36217 -10.03338 -8.10151 -6.19792 -1.31613 -0.76089 -0.44601 -0.04083 0.20238 1.40634 1.46782 1.55205 1.85637 2.07021 2.45999 2.56176 2.93545 3.19670 3.35422 3.57468 3.72719 3.81859 3.86210 4.19268 4.36606 4.43385 4.61609 4.69515 4.70193 4.78539 4.82389 4.89431 4.97817 5.04284 5.20446 5.26678 5.42348 5.47517 5.64155 5.72222 5.75190 6.07477 6.14053 6.35225 6.43411 6.87192 7.47145 8.94676 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.006106 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.937245 B = 4584.759148 C = 4835.357880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.132 4.132 3 C 0.278 3.722 4 H 0.039 0.961 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.905 5.905 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.282 1.282 13 N -1.084 6.084 14 S 2.688 3.312 15 O -0.962 6.962 16 O -0.993 6.993 17 C -0.661 4.661 18 C 0.025 3.975 19 C -0.159 4.159 20 C -0.092 4.092 21 C -0.039 4.039 22 C -0.087 4.087 23 C 0.031 3.969 24 N 0.015 4.985 25 O -0.159 6.159 26 O -0.144 6.144 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.418 0.582 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 4.901 4.304 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 C 0.173 3.827 4 H 0.057 0.943 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.544 5.544 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.847 5.847 14 S 2.776 3.224 15 O -0.952 6.952 16 O -0.983 6.983 17 C -0.747 4.747 18 C 0.023 3.977 19 C -0.215 4.215 20 C -0.110 4.110 21 C -0.057 4.057 22 C -0.107 4.107 23 C -0.052 4.052 24 N 0.537 4.463 25 O -0.374 6.374 26 O -0.365 6.365 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.254 0.746 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.210 0.790 38 H 0.225 0.775 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 11.936 4.019 4.700 13.443 hybrid contribution -1.150 1.108 -1.056 1.914 sum 10.787 5.127 3.644 12.487 Atomic orbital electron populations 1.21477 0.96323 0.99448 1.00918 1.21881 0.96509 0.98278 1.00490 1.18547 0.94560 0.89403 0.80185 0.94330 1.21460 1.32188 1.12068 0.90831 0.92484 1.25374 0.95356 0.95565 1.00550 1.69944 1.37979 1.23687 1.22753 0.85743 0.78314 0.78839 0.80154 1.19993 1.20708 1.20745 1.55304 1.26003 1.71986 1.31382 1.01886 0.73253 0.73927 0.73310 1.93578 1.80802 1.36782 1.84053 1.93579 1.73702 1.71824 1.59177 1.30561 1.21117 1.04371 1.18697 1.20100 0.90592 0.98136 0.88893 1.21714 1.06428 0.88040 1.05315 1.22190 0.98662 0.94569 0.95574 1.22095 0.96960 0.94835 0.91851 1.21541 0.90470 1.02486 0.96190 1.20712 0.87513 0.91818 1.05132 1.43867 1.02892 1.00290 0.99235 1.94577 1.12941 1.67707 1.62219 1.94433 1.93454 1.20083 1.28564 0.93660 0.93762 0.93688 0.90231 0.94779 0.92594 0.74575 0.87577 0.90012 0.87583 0.78961 0.77480 0.80637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.44 71.98 0.68 -4.42 16 2 C -0.13 -5.91 5.65 30.59 0.17 -5.73 16 3 C 0.28 12.63 2.18 44.24 0.10 12.73 16 4 H 0.04 1.80 5.18 -2.39 -0.01 1.79 16 5 C -0.53 -26.06 7.51 25.60 0.19 -25.86 16 6 H 0.06 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.03 1.61 5.30 84.65 0.45 2.06 16 8 N -0.90 -45.93 11.35 21.45 0.24 -45.68 16 9 Si 0.94 40.52 29.54 68.60 2.03 42.55 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 13 N -1.08 -45.35 4.53 -172.52 -0.78 -46.13 16 14 S 2.69 107.88 4.63 -56.49 -0.26 107.62 16 15 O -0.96 -39.22 13.75 -128.00 -1.76 -40.98 16 16 O -0.99 -44.19 14.33 -118.49 -1.70 -45.89 16 17 C -0.66 -23.12 5.66 22.27 0.13 -22.99 16 18 C 0.02 0.71 5.56 -19.87 -0.11 0.60 16 19 C -0.16 -4.53 7.95 71.23 0.57 -3.96 16 20 C -0.09 -1.69 9.70 22.27 0.22 -1.48 16 21 C -0.04 -0.60 10.05 22.27 0.22 -0.38 16 22 C -0.09 -1.98 9.73 22.27 0.22 -1.77 16 23 C 0.03 1.02 6.36 36.38 0.23 1.25 16 24 N 0.01 0.58 3.50 -46.47 -0.16 0.42 16 25 O -0.16 -6.85 15.30 26.28 0.40 -6.45 16 26 O -0.14 -5.38 19.05 18.89 0.36 -5.02 16 27 H 0.04 1.97 7.39 -2.39 -0.02 1.95 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.73 7.16 -2.39 -0.02 1.71 16 30 H 0.08 3.89 6.15 -2.38 -0.01 3.87 16 31 H 0.03 1.47 7.98 -2.39 -0.02 1.45 16 32 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 33 H 0.42 17.00 8.37 -96.75 -0.81 16.19 16 34 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 35 H 0.08 2.94 3.48 -2.39 -0.01 2.93 16 36 H 0.11 2.43 8.09 -2.38 -0.02 2.41 16 37 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -67.78 332.72 1.73 -66.05 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.30 Total: 23.48 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 3.06 Total: -49.96 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -0.70 Total: -91.40 kcal Atomic # 8 Polarization: -95.64 SS G_CDS: -2.70 Total: -98.33 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 107.88 SS G_CDS: -0.26 Total: 107.62 kcal Total: -67.78 1.73 -66.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.957 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds