Wall clock time and date at job start Tue Mar 31 2020 16:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46866 * 2 1 4 4 H 1.09004 * 109.46901 * 300.98121 * 3 2 1 5 5 C 1.50703 * 109.46817 * 180.98350 * 3 2 1 6 6 H 1.07998 * 119.99888 * 239.99516 * 5 3 2 7 7 C 1.37878 * 119.99816 * 59.72822 * 5 3 2 8 8 N 1.31516 * 120.00298 * 0.26652 * 7 5 3 9 9 Si 1.86797 * 119.99766 * 180.27472 * 7 5 3 10 10 H 1.48498 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47485 * 119.99531 * 9 7 5 12 12 H 1.48497 * 109.47012 * 239.99619 * 9 7 5 13 13 N 1.46497 * 109.47195 * 60.98283 * 3 2 1 14 14 S 1.65601 * 119.99918 * 212.32451 * 13 3 2 15 15 O 1.42105 * 106.40267 * 180.46804 * 14 13 3 16 16 O 1.42099 * 106.40155 * 313.38563 * 14 13 3 17 17 C 1.76198 * 107.21592 * 66.92592 * 14 13 3 18 18 C 1.38259 * 119.99641 * 244.83329 * 17 14 13 19 19 C 1.50699 * 120.00433 * 359.97438 * 18 17 14 20 20 C 1.38218 * 119.99636 * 180.02562 * 18 17 14 21 21 C 1.38256 * 120.00123 * 359.96504 * 20 18 17 22 22 C 1.38216 * 119.99921 * 359.97438 * 21 20 18 23 23 C 1.38213 * 120.00166 * 64.56782 * 17 14 13 24 24 N 1.48018 * 119.99638 * 359.97438 * 23 17 14 25 25 O 1.21803 * 119.99715 * 178.65334 * 24 23 17 26 26 O 1.21798 * 120.00236 * 358.65592 * 24 23 17 27 27 H 1.09003 * 109.46968 * 59.61008 * 1 2 3 28 28 H 1.08998 * 109.47030 * 179.61369 * 1 2 3 29 29 H 1.09004 * 109.46989 * 299.61420 * 1 2 3 30 30 H 1.08997 * 109.47159 * 240.00356 * 2 1 3 31 31 H 1.08995 * 109.47130 * 119.99594 * 2 1 3 32 32 H 0.97000 * 120.00111 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99927 * 32.32597 * 13 3 2 34 34 H 1.09000 * 109.46866 * 70.55220 * 19 18 17 35 35 H 1.08991 * 109.47215 * 190.55255 * 19 18 17 36 36 H 1.09005 * 109.46897 * 310.55556 * 19 18 17 37 37 H 1.07997 * 119.99726 * 179.97438 * 20 18 17 38 38 H 1.07997 * 120.00268 * 180.02562 * 21 20 18 39 39 H 1.07998 * 120.00066 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6623 1.9615 -0.8811 5 6 3.5468 1.4427 -0.0244 6 1 4.0999 1.9058 0.7794 7 6 4.2194 0.8467 -1.0701 8 7 3.5459 0.2827 -2.0489 9 14 6.0871 0.8400 -1.0965 10 1 6.6017 1.5347 0.1109 11 1 6.5771 -0.5618 -1.1080 12 1 6.5675 1.5423 -2.3135 13 7 1.5711 2.1263 1.2078 14 16 1.2394 3.7482 1.1652 15 8 0.8234 4.1073 2.4757 16 8 2.3342 4.3644 0.5012 17 6 -0.1627 3.9665 0.1207 18 6 -0.0389 4.6661 -1.0654 19 6 1.2951 5.2426 -1.4645 20 6 -1.1389 4.8378 -1.8845 21 6 -2.3628 4.3093 -1.5182 22 6 -2.4862 3.6088 -0.3331 23 6 -1.3851 3.4336 0.4843 24 7 -1.5160 2.6790 1.7510 25 8 -2.5986 2.2304 2.0834 26 8 -0.5414 2.5067 2.4608 27 1 -0.3633 0.5199 -0.8865 28 1 -0.3633 -1.0276 -0.0069 29 1 -0.3633 0.5078 0.8935 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 4.0191 -0.1369 -2.7844 33 1 1.4549 1.6290 2.0325 34 1 1.9733 4.4340 -1.7370 35 1 1.1626 5.9086 -2.3170 36 1 1.7141 5.8019 -0.6280 37 1 -1.0423 5.3847 -2.8107 38 1 -3.2222 4.4430 -2.1583 39 1 -3.4422 3.1955 -0.0471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:18 Heat of formation + Delta-G solvation = -34.398112 kcal Electronic energy + Delta-G solvation = -28242.199275 eV Core-core repulsion = 24281.225130 eV Total energy + Delta-G solvation = -3960.974145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17928 -39.65537 -36.97286 -36.40946 -35.86814 -35.28051 -33.23205 -32.21430 -32.11166 -30.64123 -27.33762 -26.65179 -26.61365 -23.30776 -23.08004 -22.01971 -20.20863 -19.38193 -18.70981 -18.55851 -17.50774 -17.41021 -16.90144 -16.32672 -16.04545 -15.52222 -15.17765 -14.47630 -14.05492 -13.95035 -13.65915 -13.16945 -13.08421 -12.83171 -12.62928 -12.43618 -12.16564 -11.97876 -11.78245 -11.47802 -11.30134 -11.24478 -11.18821 -11.08652 -10.93781 -10.80049 -10.54328 -10.34027 -10.20660 -9.94003 -9.89991 -9.84802 -9.66695 -9.29325 -8.47311 -8.23717 -6.10075 -4.15804 -0.34438 0.54282 0.93303 1.35639 1.38623 2.96914 3.28137 3.36352 3.43138 3.67693 4.07593 4.28220 4.33250 4.41635 4.59474 4.62202 4.84381 5.17786 5.19089 5.23291 5.40213 5.44163 5.70997 5.93568 5.99220 6.00052 6.04943 6.07520 6.25384 6.38880 6.49236 6.56147 6.71720 6.85778 7.05555 7.54154 7.59808 7.68621 7.91079 8.14960 8.20656 8.88748 9.50430 10.94598 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.005870 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.572479 B = 4768.606900 C = 5099.958996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.280 3.720 4 H 0.034 0.966 5 C -0.515 4.515 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 N -1.085 6.085 14 S 2.687 3.313 15 O -0.957 6.957 16 O -0.937 6.937 17 C -0.631 4.631 18 C 0.030 3.970 19 C -0.143 4.143 20 C -0.098 4.098 21 C -0.071 4.071 22 C -0.084 4.084 23 C 0.052 3.948 24 N 0.016 4.984 25 O -0.156 6.156 26 O -0.123 6.123 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.262 0.738 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 7.298 -1.849 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.176 3.824 4 H 0.052 0.948 5 C -0.554 4.554 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.849 5.849 14 S 2.769 3.231 15 O -0.947 6.947 16 O -0.927 6.927 17 C -0.712 4.712 18 C 0.028 3.972 19 C -0.200 4.200 20 C -0.116 4.116 21 C -0.090 4.090 22 C -0.104 4.104 23 C -0.031 4.031 24 N 0.535 4.465 25 O -0.370 6.370 26 O -0.341 6.341 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.882 8.341 -2.412 13.922 hybrid contribution 0.033 -0.809 -0.047 0.811 sum -10.849 7.531 -2.459 13.434 Atomic orbital electron populations 1.21870 0.99609 0.99817 0.99374 1.21866 0.91329 0.99514 1.03723 1.18563 0.94158 0.89742 0.79970 0.94810 1.21567 0.90687 1.35831 1.07363 0.91435 1.24898 0.98731 0.94968 0.95269 1.69851 1.35275 1.37748 1.10557 0.86443 0.85260 0.77571 0.78217 1.19519 1.21087 1.20988 1.55552 1.80411 1.27827 1.21074 1.02448 0.73588 0.74102 0.72989 1.93605 1.82756 1.82943 1.35353 1.93644 1.48769 1.74572 1.75668 1.31402 1.17444 1.08350 1.13978 1.19919 0.97657 0.90373 0.89283 1.21575 0.91594 1.03271 1.03513 1.21700 0.92048 0.98134 0.99742 1.21403 0.98518 0.94363 0.94715 1.21085 0.98116 0.97620 0.93586 1.20484 0.96062 0.99723 0.86786 1.43703 1.00989 0.99885 1.01875 1.94493 1.15134 1.50840 1.76540 1.94587 1.28750 1.60580 1.50166 0.94481 0.94083 0.94773 0.87583 0.93447 0.92820 0.74983 0.87037 0.91212 0.87510 0.83376 0.83179 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.76 37.16 0.36 -2.49 16 2 C -0.12 -2.74 5.33 -26.73 -0.14 -2.89 16 3 C 0.28 6.46 2.17 -69.08 -0.15 6.31 16 4 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 5 C -0.51 -13.40 8.78 -34.44 -0.30 -13.70 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -23.74 11.30 55.43 0.63 -23.12 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -1.08 -22.36 3.79 -5.88 -0.02 -22.39 16 14 S 2.69 53.14 4.82 -107.50 -0.52 52.62 16 15 O -0.96 -20.33 14.87 -67.45 -1.00 -21.33 16 16 O -0.94 -19.73 12.96 -57.17 -0.74 -20.47 16 17 C -0.63 -10.74 5.86 -39.58 -0.23 -10.97 16 18 C 0.03 0.43 5.88 -104.62 -0.62 -0.19 16 19 C -0.14 -2.04 8.24 36.01 0.30 -1.75 16 20 C -0.10 -1.04 9.67 -39.58 -0.38 -1.42 16 21 C -0.07 -0.68 10.05 -39.58 -0.40 -1.08 16 22 C -0.08 -1.03 9.56 -39.58 -0.38 -1.41 16 23 C 0.05 0.85 6.82 -79.95 -0.55 0.30 16 24 N 0.02 0.30 3.95 33.96 0.13 0.43 16 25 O -0.16 -2.67 18.45 -29.46 -0.54 -3.21 16 26 O -0.12 -2.40 11.11 -37.46 -0.42 -2.82 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.63 6.47 -51.93 -0.34 0.29 16 30 H 0.11 2.59 6.03 -51.93 -0.31 2.28 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.41 8.04 7.63 -34.47 -0.26 7.78 16 34 H 0.11 1.88 7.58 -51.93 -0.39 1.49 16 35 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 36 H 0.11 1.60 6.23 -51.93 -0.32 1.28 16 37 H 0.15 1.05 7.97 -52.49 -0.42 0.63 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.16 1.54 7.61 -52.49 -0.40 1.14 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.96 333.54 -9.57 -40.52 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.51 Total: 6.69 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -2.58 Total: -27.72 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.74 Total: -45.07 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -2.70 Total: -47.83 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.52 Total: 52.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.96 -9.57 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.125 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds