Wall clock time and date at job start Tue Mar 31 2020 16:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46866 * 2 1 4 4 H 1.09004 * 109.46901 * 300.98121 * 3 2 1 5 5 C 1.50703 * 109.46817 * 180.98350 * 3 2 1 6 6 H 1.07998 * 119.99888 * 239.99516 * 5 3 2 7 7 C 1.37878 * 119.99816 * 59.72822 * 5 3 2 8 8 N 1.31516 * 120.00298 * 0.26652 * 7 5 3 9 9 Si 1.86797 * 119.99766 * 180.27472 * 7 5 3 10 10 H 1.48498 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47485 * 119.99531 * 9 7 5 12 12 H 1.48497 * 109.47012 * 239.99619 * 9 7 5 13 13 N 1.46497 * 109.47195 * 60.98283 * 3 2 1 14 14 S 1.65601 * 119.99918 * 212.32451 * 13 3 2 15 15 O 1.42105 * 106.40267 * 180.46804 * 14 13 3 16 16 O 1.42099 * 106.40155 * 313.38563 * 14 13 3 17 17 C 1.76198 * 107.21592 * 66.92592 * 14 13 3 18 18 C 1.38259 * 119.99641 * 244.83329 * 17 14 13 19 19 C 1.50699 * 120.00433 * 359.97438 * 18 17 14 20 20 C 1.38218 * 119.99636 * 180.02562 * 18 17 14 21 21 C 1.38256 * 120.00123 * 359.96504 * 20 18 17 22 22 C 1.38216 * 119.99921 * 359.97438 * 21 20 18 23 23 C 1.38213 * 120.00166 * 64.56782 * 17 14 13 24 24 N 1.48018 * 119.99638 * 359.97438 * 23 17 14 25 25 O 1.21803 * 119.99715 * 178.65334 * 24 23 17 26 26 O 1.21798 * 120.00236 * 358.65592 * 24 23 17 27 27 H 1.09003 * 109.46968 * 59.61008 * 1 2 3 28 28 H 1.08998 * 109.47030 * 179.61369 * 1 2 3 29 29 H 1.09004 * 109.46989 * 299.61420 * 1 2 3 30 30 H 1.08997 * 109.47159 * 240.00356 * 2 1 3 31 31 H 1.08995 * 109.47130 * 119.99594 * 2 1 3 32 32 H 0.97000 * 120.00111 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99927 * 32.32597 * 13 3 2 34 34 H 1.09000 * 109.46866 * 70.55220 * 19 18 17 35 35 H 1.08991 * 109.47215 * 190.55255 * 19 18 17 36 36 H 1.09005 * 109.46897 * 310.55556 * 19 18 17 37 37 H 1.07997 * 119.99726 * 179.97438 * 20 18 17 38 38 H 1.07997 * 120.00268 * 180.02562 * 21 20 18 39 39 H 1.07998 * 120.00066 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6623 1.9615 -0.8811 5 6 3.5468 1.4427 -0.0244 6 1 4.0999 1.9058 0.7794 7 6 4.2194 0.8467 -1.0701 8 7 3.5459 0.2827 -2.0489 9 14 6.0871 0.8400 -1.0965 10 1 6.6017 1.5347 0.1109 11 1 6.5771 -0.5618 -1.1080 12 1 6.5675 1.5423 -2.3135 13 7 1.5711 2.1263 1.2078 14 16 1.2394 3.7482 1.1652 15 8 0.8234 4.1073 2.4757 16 8 2.3342 4.3644 0.5012 17 6 -0.1627 3.9665 0.1207 18 6 -0.0389 4.6661 -1.0654 19 6 1.2951 5.2426 -1.4645 20 6 -1.1389 4.8378 -1.8845 21 6 -2.3628 4.3093 -1.5182 22 6 -2.4862 3.6088 -0.3331 23 6 -1.3851 3.4336 0.4843 24 7 -1.5160 2.6790 1.7510 25 8 -2.5986 2.2304 2.0834 26 8 -0.5414 2.5067 2.4608 27 1 -0.3633 0.5199 -0.8865 28 1 -0.3633 -1.0276 -0.0069 29 1 -0.3633 0.5078 0.8935 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 4.0191 -0.1369 -2.7844 33 1 1.4549 1.6290 2.0325 34 1 1.9733 4.4340 -1.7370 35 1 1.1626 5.9086 -2.3170 36 1 1.7141 5.8019 -0.6280 37 1 -1.0423 5.3847 -2.8107 38 1 -3.2222 4.4430 -2.1583 39 1 -3.4422 3.1955 -0.0471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:17 Heat of formation + Delta-G solvation = -54.021900 kcal Electronic energy + Delta-G solvation = -28243.050227 eV Core-core repulsion = 24281.225130 eV Total energy + Delta-G solvation = -3961.825096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.44904 -40.68246 -38.47528 -37.97209 -37.45958 -36.87142 -34.33091 -34.12261 -33.15236 -32.29849 -28.61476 -28.41223 -27.73640 -24.96651 -24.31845 -23.17701 -21.96919 -20.74175 -20.01813 -19.83934 -18.81378 -18.75393 -18.69604 -17.92120 -17.38555 -16.84327 -16.47820 -16.08860 -15.46220 -15.15004 -15.02975 -14.88310 -14.68400 -13.94169 -13.78389 -13.71484 -13.57532 -13.42782 -13.18846 -13.07411 -12.98255 -12.76316 -12.68470 -12.62375 -12.54760 -12.40341 -12.10561 -11.95353 -11.72608 -11.70121 -11.58221 -11.43845 -10.86655 -10.47301 -10.35778 -10.01661 -8.10838 -6.22433 -1.52451 -0.58560 -0.41185 0.19154 0.20699 1.41051 1.44430 1.55803 1.97321 2.19299 2.45848 2.73202 3.06518 3.15679 3.42363 3.63111 3.74556 3.84385 3.95809 4.21355 4.33979 4.40370 4.43925 4.58690 4.65195 4.72131 4.76394 4.83600 4.98685 5.00146 5.06962 5.16999 5.29079 5.30891 5.47557 5.66316 5.73708 5.96189 6.25207 6.29942 6.52316 6.83637 7.45680 8.92139 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.005870 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.572479 B = 4768.606900 C = 5099.958996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.291 3.709 4 H 0.020 0.980 5 C -0.536 4.536 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.278 1.278 13 N -1.089 6.089 14 S 2.694 3.306 15 O -0.981 6.981 16 O -0.965 6.965 17 C -0.656 4.656 18 C 0.015 3.985 19 C -0.145 4.145 20 C -0.081 4.081 21 C -0.047 4.047 22 C -0.074 4.074 23 C 0.022 3.978 24 N 0.016 4.984 25 O -0.127 6.127 26 O -0.188 6.188 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.196 0.804 38 H 0.210 0.790 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 8.116 -4.415 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.037 0.963 5 C -0.575 4.575 6 H 0.068 0.932 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.204 1.204 13 N -0.851 5.851 14 S 2.782 3.218 15 O -0.972 6.972 16 O -0.955 6.955 17 C -0.742 4.742 18 C 0.013 3.987 19 C -0.201 4.201 20 C -0.099 4.099 21 C -0.065 4.065 22 C -0.094 4.094 23 C -0.061 4.061 24 N 0.531 4.469 25 O -0.352 6.352 26 O -0.391 6.391 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.213 0.787 38 H 0.227 0.773 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.639 9.148 -4.891 17.136 hybrid contribution 0.702 -0.969 0.610 1.343 sum -12.937 8.179 -4.281 15.893 Atomic orbital electron populations 1.21738 0.97098 1.01076 0.99643 1.21701 0.93579 0.98317 1.02301 1.18250 0.92527 0.90353 0.80322 0.96270 1.21799 0.92576 1.35994 1.07147 0.93203 1.25482 1.02099 0.94792 0.95092 1.69928 1.36349 1.37909 1.10753 0.85680 0.81306 0.77790 0.77927 1.20185 1.20188 1.20363 1.55405 1.81238 1.28054 1.20446 1.01710 0.73942 0.73328 0.72831 1.93565 1.83299 1.83007 1.37283 1.93621 1.51132 1.74841 1.75920 1.30722 1.16355 1.11849 1.15270 1.20158 0.99032 0.90418 0.89124 1.21510 0.91323 1.02697 1.04606 1.22285 0.90808 0.96739 1.00087 1.22141 0.99773 0.91038 0.93513 1.21695 0.97681 0.96596 0.93420 1.20737 0.97254 1.01405 0.86733 1.44034 1.00634 0.99695 1.02490 1.94427 1.14848 1.49498 1.76448 1.94605 1.29218 1.63488 1.51790 0.94288 0.92210 0.94380 0.89801 0.93911 0.92581 0.74844 0.90526 0.86777 0.89263 0.78710 0.77342 0.79865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.76 71.98 0.70 -4.54 16 2 C -0.12 -5.40 5.33 30.60 0.16 -5.24 16 3 C 0.29 14.04 2.17 44.25 0.10 14.13 16 4 H 0.02 0.99 7.97 -2.38 -0.02 0.97 16 5 C -0.54 -29.16 8.78 25.60 0.22 -28.94 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.03 1.35 5.30 84.65 0.45 1.80 16 8 N -0.91 -49.06 11.30 21.45 0.24 -48.82 16 9 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -1.09 -47.79 3.79 -172.51 -0.65 -48.44 16 14 S 2.69 113.21 4.82 -56.49 -0.27 112.94 16 15 O -0.98 -44.64 14.87 -118.18 -1.76 -46.39 16 16 O -0.97 -43.67 12.96 -128.00 -1.66 -45.33 16 17 C -0.66 -22.26 5.86 22.27 0.13 -22.13 16 18 C 0.01 0.40 5.88 -19.86 -0.12 0.28 16 19 C -0.14 -4.09 8.24 71.24 0.59 -3.50 16 20 C -0.08 -1.29 9.67 22.27 0.22 -1.07 16 21 C -0.05 -0.58 10.05 22.27 0.22 -0.36 16 22 C -0.07 -1.48 9.56 22.27 0.21 -1.26 16 23 C 0.02 0.68 6.82 36.37 0.25 0.93 16 24 N 0.02 0.59 3.95 -46.47 -0.18 0.40 16 25 O -0.13 -4.16 18.45 18.88 0.35 -3.81 16 26 O -0.19 -7.71 11.11 26.54 0.29 -7.42 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.41 6.47 -2.38 -0.02 1.39 16 30 H 0.08 4.19 6.03 -2.39 -0.01 4.18 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.26 13.55 8.31 -92.71 -0.77 12.77 16 33 H 0.42 17.49 7.63 -96.75 -0.74 16.75 16 34 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 35 H 0.11 2.07 7.91 -2.39 -0.02 2.05 16 36 H 0.09 2.80 6.23 -2.38 -0.01 2.78 16 37 H 0.20 1.30 7.97 -2.91 -0.02 1.28 16 38 H 0.21 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.18 2.61 7.61 -2.91 -0.02 2.58 16 Total: -1.00 -72.75 333.54 1.88 -70.87 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.36 Total: 20.43 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 3.14 Total: -49.88 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -0.60 Total: -96.86 kcal Atomic # 8 Polarization: -100.18 SS G_CDS: -2.77 Total: -102.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 113.21 SS G_CDS: -0.27 Total: 112.94 kcal Total: -72.75 1.88 -70.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.844 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds