Wall clock time and date at job start Tue Mar 31 2020 16:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 H 1.09001 * 109.47301 * 305.00603 * 3 2 1 5 5 C 1.50696 * 109.46855 * 185.00974 * 3 2 1 6 6 H 1.08006 * 119.99737 * 245.07780 * 5 3 2 7 7 C 1.37873 * 120.00395 * 65.07883 * 5 3 2 8 8 N 1.31519 * 120.00250 * 194.56817 * 7 5 3 9 9 Si 1.86794 * 120.00014 * 14.56275 * 7 5 3 10 10 H 1.48501 * 109.47187 * 90.34527 * 9 7 5 11 11 H 1.48500 * 109.47499 * 210.34434 * 9 7 5 12 12 H 1.48500 * 109.47313 * 330.34572 * 9 7 5 13 13 N 1.46494 * 109.46978 * 65.00606 * 3 2 1 14 14 S 1.65606 * 119.99679 * 215.94817 * 13 3 2 15 15 O 1.42108 * 104.27474 * 180.46199 * 14 13 3 16 16 O 1.42098 * 104.27985 * 308.31791 * 14 13 3 17 17 C 1.81404 * 104.44769 * 64.39506 * 14 13 3 18 18 C 1.50706 * 109.46900 * 183.73801 * 17 14 13 19 19 C 1.38254 * 119.99727 * 92.78978 * 18 17 14 20 20 C 1.38217 * 119.99631 * 179.78366 * 19 18 17 21 21 C 1.38262 * 119.99907 * 0.47121 * 20 19 18 22 22 C 1.38218 * 119.99952 * 359.76227 * 21 20 19 23 23 C 1.38212 * 119.99518 * 273.06595 * 18 17 14 24 24 N 1.48016 * 120.00488 * 359.97438 * 23 18 17 25 25 O 1.21797 * 119.99777 * 185.68331 * 24 23 18 26 26 O 1.21798 * 119.99834 * 5.69573 * 24 23 18 27 27 H 1.08998 * 109.46521 * 54.96221 * 1 2 3 28 28 H 1.09001 * 109.47133 * 294.96581 * 1 2 3 29 29 H 1.08996 * 109.47090 * 174.96210 * 1 2 3 30 30 H 1.08996 * 109.46714 * 120.00207 * 2 1 3 31 31 H 1.09001 * 109.47020 * 239.99517 * 2 1 3 32 32 H 0.96999 * 120.00358 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00116 * 35.95808 * 13 3 2 34 34 H 1.08994 * 109.46678 * 303.73573 * 17 14 13 35 35 H 1.09002 * 109.47044 * 63.73836 * 17 14 13 36 36 H 1.07998 * 120.00455 * 0.02562 * 19 18 17 37 37 H 1.07999 * 120.00132 * 180.25463 * 20 19 18 38 38 H 1.07997 * 119.99865 * 179.78602 * 21 20 19 39 39 H 1.07994 * 120.00012 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1241 6 1 4.1504 1.8141 0.6880 7 6 4.1393 0.9736 -1.2741 8 7 5.4266 0.7047 -1.2838 9 14 3.1201 0.7179 -2.8185 10 1 3.1285 1.9623 -3.6288 11 1 3.6978 -0.3948 -3.6143 12 1 1.7237 0.3829 -2.4403 13 7 1.6526 2.0974 1.2518 14 16 1.2333 3.6994 1.2528 15 8 0.9359 3.9830 2.6132 16 8 2.3114 4.3444 0.5888 17 6 -0.2721 3.7738 0.2434 18 6 -0.7051 5.2094 0.0922 19 6 -0.2819 5.9480 -0.9972 20 6 -0.6827 7.2632 -1.1381 21 6 -1.4988 7.8432 -0.1846 22 6 -1.9179 7.1062 0.9070 23 6 -1.5206 5.7892 1.0457 24 7 -1.9691 5.0001 2.2149 25 8 -2.7694 5.4761 3.0000 26 8 -1.5377 3.8750 2.3919 27 1 -0.3632 0.5900 -0.8414 28 1 -0.3633 0.4338 0.9316 29 1 -0.3633 -1.0237 -0.0902 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 5.8469 0.3740 -2.0931 33 1 1.6419 1.5927 2.0801 34 1 -0.0713 3.3494 -0.7402 35 1 -1.0643 3.2047 0.7299 36 1 0.3586 5.4961 -1.7401 37 1 -0.3555 7.8390 -1.9913 38 1 -1.8091 8.8719 -0.2930 39 1 -2.5557 7.5591 1.6516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:57 Heat of formation + Delta-G solvation = -37.418520 kcal Electronic energy + Delta-G solvation = -27120.913539 eV Core-core repulsion = 23159.808419 eV Total energy + Delta-G solvation = -3961.105120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31294 -39.77974 -36.79722 -36.61703 -36.19312 -35.40531 -33.54865 -32.23495 -32.19780 -31.04219 -28.33156 -27.21864 -26.23632 -23.03192 -22.80222 -22.42653 -20.54045 -19.42497 -18.82306 -18.57635 -17.76727 -17.35947 -16.79467 -16.68654 -16.12657 -15.84940 -15.39290 -15.05147 -14.76847 -14.06457 -13.96548 -13.53663 -13.48051 -13.11092 -12.84612 -12.67680 -12.31142 -12.05532 -11.97213 -11.61582 -11.58567 -11.46782 -11.42952 -11.09621 -11.07218 -10.97552 -10.90806 -10.77305 -10.67649 -10.13172 -9.94421 -9.88920 -9.51423 -9.35136 -8.63354 -8.29134 -6.16387 -4.11952 -0.36682 0.36550 0.87266 1.20330 1.29592 2.93281 3.16982 3.21221 3.25521 3.29792 3.80926 3.95948 4.18546 4.31234 4.35794 4.52136 4.53310 4.68146 4.77197 5.07882 5.14204 5.24008 5.39208 5.51120 5.59988 5.70435 5.75588 5.78789 5.90692 5.96721 6.11237 6.39114 6.42444 6.48186 6.63079 6.98096 7.17299 7.53685 7.62228 7.82220 8.44329 8.97310 9.45599 10.97109 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.004762 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.539348 B = 5878.643146 C = 6477.157810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.133 4.133 3 C 0.255 3.745 4 H 0.027 0.973 5 C -0.526 4.526 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.885 5.885 9 Si 0.850 3.150 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.250 1.250 13 N -1.088 6.088 14 S 2.614 3.386 15 O -0.956 6.956 16 O -0.933 6.933 17 C -0.633 4.633 18 C -0.010 4.010 19 C -0.108 4.108 20 C -0.063 4.063 21 C -0.119 4.119 22 C -0.054 4.054 23 C -0.045 4.045 24 N 0.031 4.969 25 O -0.164 6.164 26 O -0.138 6.138 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.413 0.587 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 10.708 -1.372 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.172 4.172 3 C 0.149 3.851 4 H 0.044 0.956 5 C -0.565 4.565 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.522 5.522 9 Si 0.676 3.324 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.174 1.174 13 N -0.849 5.849 14 S 2.701 3.299 15 O -0.946 6.946 16 O -0.922 6.922 17 C -0.755 4.755 18 C -0.013 4.013 19 C -0.127 4.127 20 C -0.081 4.081 21 C -0.138 4.138 22 C -0.073 4.073 23 C -0.129 4.129 24 N 0.550 4.450 25 O -0.378 6.378 26 O -0.356 6.356 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.247 0.753 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.571 11.803 -1.790 19.621 hybrid contribution -1.010 -0.986 -0.855 1.650 sum -16.581 10.817 -2.645 19.974 Atomic orbital electron populations 1.21932 0.98004 1.00626 1.01012 1.22251 0.93200 0.99116 1.02655 1.18844 0.96312 0.89739 0.80200 0.95583 1.21275 0.89008 1.42500 1.03739 0.89882 1.24869 0.94781 0.94375 0.98423 1.69946 1.10732 1.43284 1.28277 0.87437 0.82087 0.78431 0.84480 1.20249 1.20902 1.17411 1.55278 1.82185 1.30123 1.17322 1.05022 0.75500 0.74571 0.74839 1.93579 1.85716 1.83875 1.31395 1.93655 1.46863 1.74518 1.77209 1.30555 1.26738 0.98344 1.19835 1.18992 0.94360 0.94387 0.93589 1.21413 0.99731 0.94580 0.96988 1.21687 0.93481 0.94372 0.98526 1.21301 0.98299 1.00927 0.93231 1.21092 0.97095 0.90477 0.98588 1.21062 1.06909 0.94151 0.90774 1.43418 0.99181 1.01079 1.01339 1.94504 1.28776 1.73795 1.40703 1.94466 1.58272 1.04309 1.78506 0.93774 0.92764 0.93602 0.91512 0.91304 0.92501 0.75276 0.83426 0.81271 0.82530 0.83302 0.83189 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.74 37.16 0.36 -2.06 16 2 C -0.13 -2.52 4.82 -26.73 -0.13 -2.65 16 3 C 0.25 5.46 1.61 -69.09 -0.11 5.35 16 4 H 0.03 0.54 5.73 -51.93 -0.30 0.24 16 5 C -0.53 -14.18 9.27 -34.44 -0.32 -14.50 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.08 2.17 5.34 -17.82 -0.10 2.08 16 8 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 9 Si 0.85 19.45 25.80 -169.99 -4.39 15.06 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.25 -5.08 5.45 56.52 0.31 -4.77 16 13 N -1.09 -20.86 4.88 -5.89 -0.03 -20.88 16 14 S 2.61 49.32 5.23 -107.50 -0.56 48.75 16 15 O -0.96 -19.55 15.80 -66.41 -1.05 -20.60 16 16 O -0.93 -20.93 17.83 -57.54 -1.03 -21.96 16 17 C -0.63 -9.17 5.28 36.01 0.19 -8.98 16 18 C -0.01 -0.14 5.14 -104.62 -0.54 -0.68 16 19 C -0.11 -1.17 9.69 -39.58 -0.38 -1.55 16 20 C -0.06 -0.48 10.05 -39.58 -0.40 -0.88 16 21 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 22 C -0.05 -0.52 9.56 -39.58 -0.38 -0.90 16 23 C -0.04 -0.60 6.83 -79.95 -0.55 -1.15 16 24 N 0.03 0.49 4.45 33.96 0.15 0.64 16 25 O -0.16 -2.55 18.46 -29.46 -0.54 -3.10 16 26 O -0.14 -2.36 12.84 -36.50 -0.47 -2.82 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.75 7.89 -51.93 -0.41 0.34 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.38 4.90 -51.93 -0.25 1.13 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.41 7.14 8.81 -34.48 -0.30 6.83 16 34 H 0.15 1.83 7.24 -51.93 -0.38 1.46 16 35 H 0.17 2.30 5.54 -51.92 -0.29 2.01 16 36 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.16 1.22 7.62 -52.49 -0.40 0.82 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -35.31 339.00 -9.29 -44.60 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.52 Total: 7.78 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.74 Total: -27.17 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.90 Total: -45.65 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -3.09 Total: -48.49 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.39 Total: 15.06 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -0.56 Total: 48.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.31 -9.29 -44.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.186 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds