Wall clock time and date at job start Tue Mar 31 2020 16:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 H 1.09001 * 109.47301 * 305.00603 * 3 2 1 5 5 C 1.50696 * 109.46855 * 185.00974 * 3 2 1 6 6 H 1.08006 * 119.99737 * 245.07780 * 5 3 2 7 7 C 1.37873 * 120.00395 * 65.07883 * 5 3 2 8 8 N 1.31519 * 120.00250 * 194.56817 * 7 5 3 9 9 Si 1.86794 * 120.00014 * 14.56275 * 7 5 3 10 10 H 1.48501 * 109.47187 * 90.34527 * 9 7 5 11 11 H 1.48500 * 109.47499 * 210.34434 * 9 7 5 12 12 H 1.48500 * 109.47313 * 330.34572 * 9 7 5 13 13 N 1.46494 * 109.46978 * 65.00606 * 3 2 1 14 14 S 1.65606 * 119.99679 * 215.94817 * 13 3 2 15 15 O 1.42108 * 104.27474 * 180.46199 * 14 13 3 16 16 O 1.42098 * 104.27985 * 308.31791 * 14 13 3 17 17 C 1.81404 * 104.44769 * 64.39506 * 14 13 3 18 18 C 1.50706 * 109.46900 * 183.73801 * 17 14 13 19 19 C 1.38254 * 119.99727 * 92.78978 * 18 17 14 20 20 C 1.38217 * 119.99631 * 179.78366 * 19 18 17 21 21 C 1.38262 * 119.99907 * 0.47121 * 20 19 18 22 22 C 1.38218 * 119.99952 * 359.76227 * 21 20 19 23 23 C 1.38212 * 119.99518 * 273.06595 * 18 17 14 24 24 N 1.48016 * 120.00488 * 359.97438 * 23 18 17 25 25 O 1.21797 * 119.99777 * 185.68331 * 24 23 18 26 26 O 1.21798 * 119.99834 * 5.69573 * 24 23 18 27 27 H 1.08998 * 109.46521 * 54.96221 * 1 2 3 28 28 H 1.09001 * 109.47133 * 294.96581 * 1 2 3 29 29 H 1.08996 * 109.47090 * 174.96210 * 1 2 3 30 30 H 1.08996 * 109.46714 * 120.00207 * 2 1 3 31 31 H 1.09001 * 109.47020 * 239.99517 * 2 1 3 32 32 H 0.96999 * 120.00358 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00116 * 35.95808 * 13 3 2 34 34 H 1.08994 * 109.46678 * 303.73573 * 17 14 13 35 35 H 1.09002 * 109.47044 * 63.73836 * 17 14 13 36 36 H 1.07998 * 120.00455 * 0.02562 * 19 18 17 37 37 H 1.07999 * 120.00132 * 180.25463 * 20 19 18 38 38 H 1.07997 * 119.99865 * 179.78602 * 21 20 19 39 39 H 1.07994 * 120.00012 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1241 6 1 4.1504 1.8141 0.6880 7 6 4.1393 0.9736 -1.2741 8 7 5.4266 0.7047 -1.2838 9 14 3.1201 0.7179 -2.8185 10 1 3.1285 1.9623 -3.6288 11 1 3.6978 -0.3948 -3.6143 12 1 1.7237 0.3829 -2.4403 13 7 1.6526 2.0974 1.2518 14 16 1.2333 3.6994 1.2528 15 8 0.9359 3.9830 2.6132 16 8 2.3114 4.3444 0.5888 17 6 -0.2721 3.7738 0.2434 18 6 -0.7051 5.2094 0.0922 19 6 -0.2819 5.9480 -0.9972 20 6 -0.6827 7.2632 -1.1381 21 6 -1.4988 7.8432 -0.1846 22 6 -1.9179 7.1062 0.9070 23 6 -1.5206 5.7892 1.0457 24 7 -1.9691 5.0001 2.2149 25 8 -2.7694 5.4761 3.0000 26 8 -1.5377 3.8750 2.3919 27 1 -0.3632 0.5900 -0.8414 28 1 -0.3633 0.4338 0.9316 29 1 -0.3633 -1.0237 -0.0902 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 5.8469 0.3740 -2.0931 33 1 1.6419 1.5927 2.0801 34 1 -0.0713 3.3494 -0.7402 35 1 -1.0643 3.2047 0.7299 36 1 0.3586 5.4961 -1.7401 37 1 -0.3555 7.8390 -1.9913 38 1 -1.8091 8.8719 -0.2930 39 1 -2.5557 7.5591 1.6516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:57 Heat of formation + Delta-G solvation = -63.783615 kcal Electronic energy + Delta-G solvation = -27122.056815 eV Core-core repulsion = 23159.808419 eV Total energy + Delta-G solvation = -3962.248396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.38807 -40.58860 -38.29951 -37.91546 -37.74056 -36.99118 -34.43261 -34.26698 -33.01309 -32.47547 -29.33480 -29.00492 -27.21733 -24.50953 -23.88631 -23.31845 -22.12562 -20.65785 -20.03004 -19.68278 -19.17532 -18.88165 -18.39339 -17.72998 -17.44286 -16.93648 -16.74421 -16.36670 -15.82624 -15.63037 -15.06827 -14.77869 -14.55511 -14.36604 -14.23408 -14.04089 -13.59710 -13.38691 -13.20562 -13.13397 -13.05443 -12.69734 -12.65509 -12.62831 -12.58206 -12.34135 -12.27623 -12.14567 -11.88780 -11.72415 -11.63227 -11.18535 -10.70297 -10.62603 -10.34209 -9.96615 -8.26809 -6.28232 -1.38008 -0.80263 -0.08308 0.23104 0.32169 1.37419 1.40044 1.48958 1.79795 2.20837 2.37710 2.67054 2.98029 3.04369 3.08764 3.35265 3.62306 3.89067 3.91548 3.95497 4.10022 4.24106 4.30733 4.40063 4.49239 4.58025 4.67649 4.72727 4.93817 4.98507 5.04745 5.16113 5.18528 5.27523 5.47299 5.47565 5.57732 5.68172 6.23927 6.42230 6.45429 6.75372 7.33716 8.91225 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.004762 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.539348 B = 5878.643146 C = 6477.157810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.257 3.743 4 H 0.046 0.954 5 C -0.537 4.537 6 H 0.025 0.975 7 C 0.015 3.985 8 N -0.944 5.944 9 Si 0.914 3.086 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.202 1.202 13 N -1.094 6.094 14 S 2.609 3.391 15 O -0.982 6.982 16 O -0.983 6.983 17 C -0.604 4.604 18 C -0.044 4.044 19 C -0.119 4.119 20 C -0.048 4.048 21 C -0.097 4.097 22 C -0.057 4.057 23 C -0.070 4.070 24 N 0.030 4.970 25 O -0.164 6.164 26 O -0.184 6.184 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.266 0.734 33 H 0.417 0.583 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.192 0.808 38 H 0.198 0.802 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.141 12.646 -4.070 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.064 0.936 5 C -0.576 4.576 6 H 0.043 0.957 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.735 3.265 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.124 1.124 13 N -0.853 5.853 14 S 2.704 3.296 15 O -0.972 6.972 16 O -0.973 6.973 17 C -0.732 4.732 18 C -0.047 4.047 19 C -0.139 4.139 20 C -0.066 4.066 21 C -0.115 4.115 22 C -0.075 4.075 23 C -0.154 4.154 24 N 0.543 4.457 25 O -0.380 6.380 26 O -0.392 6.392 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.190 0.810 35 H 0.197 0.803 36 H 0.183 0.817 37 H 0.209 0.791 38 H 0.215 0.785 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.279 13.663 -4.417 24.039 hybrid contribution 0.140 -1.320 0.024 1.327 sum -19.139 12.343 -4.393 23.194 Atomic orbital electron populations 1.21914 0.94429 1.02543 1.02415 1.22141 0.96333 0.96616 1.02101 1.18754 0.92704 0.91947 0.81600 0.93648 1.21587 0.92061 1.41681 1.02259 0.95668 1.25872 0.96044 0.94015 1.02407 1.70128 1.13384 1.45447 1.29398 0.86400 0.82674 0.78473 0.78935 1.19613 1.21005 1.12374 1.55142 1.83111 1.30034 1.17049 1.04769 0.76380 0.73785 0.74714 1.93538 1.86374 1.83927 1.33407 1.93592 1.50608 1.75338 1.77746 1.30128 1.22936 1.00638 1.19454 1.19063 0.96412 0.93891 0.95362 1.21765 0.99724 0.96022 0.96351 1.22260 0.91730 0.93095 0.99485 1.21918 0.96045 1.02464 0.91098 1.21568 0.96944 0.89085 0.99946 1.21376 1.08671 0.95365 0.89986 1.43832 0.98783 1.01100 1.01947 1.94458 1.28657 1.73544 1.41373 1.94451 1.59460 1.05593 1.79682 0.92136 0.91735 0.91481 0.92142 0.92049 0.92533 0.74824 0.81031 0.80318 0.81668 0.79102 0.78464 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 9.74 71.98 0.70 -3.53 16 2 C -0.13 -4.84 4.82 30.60 0.15 -4.70 16 3 C 0.26 10.97 1.61 44.24 0.07 11.04 16 4 H 0.05 1.78 5.73 -2.39 -0.01 1.76 16 5 C -0.54 -30.26 9.27 25.60 0.24 -30.03 16 6 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 7 C 0.01 0.83 5.34 84.65 0.45 1.28 16 8 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 9 Si 0.91 39.50 25.80 68.60 1.77 41.27 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.20 -7.13 5.45 99.48 0.54 -6.59 16 13 N -1.09 -43.09 4.88 -172.54 -0.84 -43.93 16 14 S 2.61 100.90 5.23 -56.49 -0.30 100.60 16 15 O -0.98 -42.02 15.80 -119.17 -1.88 -43.90 16 16 O -0.98 -45.88 17.83 -127.65 -2.28 -48.15 16 17 C -0.60 -16.66 5.28 71.24 0.38 -16.29 16 18 C -0.04 -1.09 5.14 -19.87 -0.10 -1.20 16 19 C -0.12 -2.17 9.69 22.27 0.22 -1.95 16 20 C -0.05 -0.49 10.05 22.27 0.22 -0.26 16 21 C -0.10 -0.84 10.05 22.27 0.22 -0.62 16 22 C -0.06 -0.90 9.56 22.27 0.21 -0.69 16 23 C -0.07 -1.75 6.83 36.37 0.25 -1.50 16 24 N 0.03 0.93 4.45 -46.47 -0.21 0.72 16 25 O -0.16 -4.99 18.46 18.89 0.35 -4.64 16 26 O -0.18 -6.35 12.84 25.62 0.33 -6.02 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.62 7.89 -2.39 -0.02 1.60 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.06 2.32 4.90 -2.39 -0.01 2.31 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.42 15.18 8.81 -96.74 -0.85 14.33 16 34 H 0.17 3.77 7.24 -2.39 -0.02 3.76 16 35 H 0.18 4.66 5.54 -2.39 -0.01 4.64 16 36 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.19 0.36 8.06 -2.91 -0.02 0.33 16 38 H 0.20 -0.08 8.06 -2.91 -0.02 -0.11 16 39 H 0.17 2.10 7.62 -2.91 -0.02 2.08 16 Total: -1.00 -85.30 339.00 0.33 -84.97 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.08 Total: 25.86 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 3.01 Total: -48.43 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -0.75 Total: -101.55 kcal Atomic # 8 Polarization: -99.23 SS G_CDS: -3.48 Total: -102.72 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.77 Total: 41.27 kcal Atomic # 16 Polarization: 100.90 SS G_CDS: -0.30 Total: 100.60 kcal Total: -85.30 0.33 -84.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.186 kcal (2) G-P(sol) polarization free energy of solvation -85.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds