Wall clock time and date at job start Tue Mar 31 2020 16:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47511 * 2 1 4 4 H 1.09005 * 109.46943 * 54.41609 * 3 2 1 5 5 C 1.50703 * 109.47267 * 174.41816 * 3 2 1 6 6 H 1.08001 * 119.99691 * 119.99960 * 5 3 2 7 7 C 1.37879 * 119.99926 * 299.99793 * 5 3 2 8 8 N 1.31515 * 119.99902 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99729 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47005 * 90.00253 * 9 7 5 11 11 H 1.48500 * 109.47060 * 210.00406 * 9 7 5 12 12 H 1.48495 * 109.47315 * 330.00278 * 9 7 5 13 13 N 1.46506 * 109.47136 * 294.42012 * 3 2 1 14 14 S 1.65602 * 120.00008 * 119.38339 * 13 3 2 15 15 O 1.42093 * 106.40001 * 177.16157 * 14 13 3 16 16 O 1.42102 * 106.40045 * 310.08072 * 14 13 3 17 17 C 1.76199 * 107.21593 * 63.62401 * 14 13 3 18 18 C 1.38260 * 119.99759 * 244.83431 * 17 14 13 19 19 C 1.38215 * 119.99875 * 179.77002 * 18 17 14 20 20 N 1.48022 * 120.00021 * 180.23130 * 19 18 17 21 21 O 1.21795 * 119.99773 * 180.26843 * 20 19 18 22 22 O 1.21798 * 119.99761 * 0.27651 * 20 19 18 23 23 C 1.38256 * 119.99920 * 0.50210 * 19 18 17 24 24 C 1.38213 * 119.99916 * 359.74993 * 23 19 18 25 25 C 1.38211 * 120.00224 * 65.10834 * 17 14 13 26 26 C 1.50696 * 119.99977 * 0.02562 * 25 17 14 27 27 H 1.09001 * 109.47572 * 298.78740 * 1 2 3 28 28 H 1.09002 * 109.47217 * 178.78445 * 1 2 3 29 29 H 1.09002 * 109.47317 * 58.78991 * 1 2 3 30 30 H 1.09001 * 109.46993 * 120.00367 * 2 1 3 31 31 H 1.09004 * 109.46886 * 239.99732 * 2 1 3 32 32 H 0.96996 * 119.99864 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99448 * 299.38182 * 13 3 2 34 34 H 1.07998 * 120.00176 * 359.97438 * 18 17 14 35 35 H 1.07999 * 120.00054 * 179.72648 * 23 19 18 36 36 H 1.08004 * 119.99950 * 179.97438 * 24 23 19 37 37 H 1.08997 * 109.47259 * 84.31378 * 26 25 17 38 38 H 1.09000 * 109.47055 * 204.32136 * 26 25 17 39 39 H 1.09001 * 109.47225 * 324.31670 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9843 0.8358 5 6 3.5407 1.4446 0.1382 6 1 4.1534 1.8865 -0.6336 7 6 4.1314 0.8824 1.2500 8 7 3.3853 0.3439 2.1896 9 14 5.9915 0.8845 1.4209 10 1 6.4227 2.1199 2.1234 11 1 6.4181 -0.3039 2.2024 12 1 6.6126 0.8394 0.0728 13 7 1.6644 2.0932 -1.2577 14 16 0.6920 3.4335 -1.2383 15 8 0.5696 3.8599 -2.5882 16 8 -0.4244 3.1075 -0.4219 17 6 1.5724 4.7044 -0.3930 18 6 1.0951 5.1943 0.8085 19 6 1.7882 6.1879 1.4739 20 7 1.2798 6.7089 2.7628 21 8 1.8880 7.5878 3.3467 22 8 0.2534 6.2585 3.2394 23 6 2.9533 6.6990 0.9329 24 6 3.4277 6.2129 -0.2708 25 6 2.7372 5.2154 -0.9339 26 6 3.2539 4.6861 -2.2468 27 1 -0.3634 0.4949 0.9006 28 1 -0.3634 -1.0274 -0.0218 29 1 -0.3634 0.5325 -0.8789 30 1 1.8932 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 3.8008 -0.0512 2.9719 33 1 1.9854 1.7390 -2.1017 34 1 0.1823 4.7984 1.2287 35 1 3.4925 7.4785 1.4507 36 1 4.3377 6.6124 -0.6936 37 1 2.7569 5.2028 -3.0677 38 1 4.3289 4.8549 -2.3088 39 1 3.0495 3.6174 -2.3134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:50 Heat of formation + Delta-G solvation = -59.894938 kcal Electronic energy + Delta-G solvation = -27160.353654 eV Core-core repulsion = 23198.273884 eV Total energy + Delta-G solvation = -3962.079770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10801 -39.64101 -37.06624 -36.48516 -36.13965 -35.58428 -33.55433 -32.39487 -31.73461 -30.69506 -28.66604 -26.81035 -25.12418 -23.79646 -23.13830 -21.97419 -20.29318 -19.99370 -18.81077 -18.61776 -17.48569 -17.38764 -16.66888 -16.33181 -16.01873 -15.92396 -15.28334 -14.64948 -14.38478 -14.18704 -13.87392 -13.28452 -13.06947 -12.74322 -12.55202 -12.45114 -12.22067 -11.96917 -11.86765 -11.68350 -11.64966 -11.48390 -11.35063 -11.21133 -11.10730 -11.05601 -10.95552 -10.81355 -10.40755 -10.12781 -9.86517 -9.76951 -9.67574 -9.42407 -8.65757 -8.43359 -6.26863 -4.37592 -0.15915 0.47008 0.75615 1.31876 1.45150 2.94093 3.11691 3.19971 3.21208 3.40695 3.95531 4.19749 4.20812 4.38393 4.44023 4.58557 4.77502 5.03082 5.04250 5.25623 5.28252 5.46660 5.48118 5.57772 5.81551 5.91040 6.08051 6.14772 6.24888 6.26731 6.47027 6.53481 6.78189 7.00959 7.10810 7.44290 7.51742 7.66472 7.72169 7.84610 8.09588 8.65406 9.30227 10.77270 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.006246 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.680211 B = 4481.582769 C = 5373.602820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.278 3.722 4 H 0.046 0.954 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.273 1.273 13 N -1.095 6.095 14 S 2.692 3.308 15 O -0.972 6.972 16 O -0.952 6.952 17 C -0.670 4.670 18 C 0.053 3.947 19 C -0.075 4.075 20 N 0.034 4.966 21 O -0.168 6.168 22 O -0.155 6.155 23 C -0.006 4.006 24 C -0.142 4.142 25 C 0.081 3.919 26 C -0.154 4.154 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.410 0.590 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 8.425 -6.948 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.064 0.936 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.857 5.857 14 S 2.778 3.222 15 O -0.962 6.962 16 O -0.942 6.942 17 C -0.753 4.753 18 C 0.033 3.967 19 C -0.159 4.159 20 N 0.553 4.447 21 O -0.382 6.382 22 O -0.373 6.373 23 C -0.025 4.025 24 C -0.161 4.161 25 C 0.080 3.920 26 C -0.210 4.210 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.245 0.755 34 H 0.188 0.812 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.155 8.263 -7.522 11.175 hybrid contribution 1.770 0.276 0.791 1.959 sum 1.615 8.539 -6.731 10.992 Atomic orbital electron populations 1.21831 0.98402 0.99280 1.01045 1.21894 0.92544 0.99149 1.03062 1.18648 0.95030 0.90511 0.78345 0.93610 1.21396 0.91005 1.39306 1.05837 0.91774 1.24918 0.98362 0.94776 0.95588 1.69846 1.35154 1.37533 1.09289 0.86566 0.85208 0.77794 0.78294 1.20716 1.20934 1.19732 1.55568 1.70408 1.42775 1.16946 1.02072 0.73900 0.73139 0.73131 1.93560 1.86344 1.82448 1.33800 1.93598 1.47557 1.82686 1.70314 1.31308 1.12076 1.22753 1.09157 1.20775 0.97673 0.88220 0.90012 1.21086 1.00995 1.05135 0.88651 1.43499 0.99993 0.99241 1.01953 1.94500 1.58659 1.23597 1.61434 1.94569 1.12592 1.61259 1.68834 1.21218 0.91195 0.96055 0.94058 1.21189 1.01625 0.98429 0.94852 1.19966 0.88972 0.89000 0.94098 1.21447 1.03221 1.03368 0.92976 0.93013 0.94674 0.94381 0.87742 0.94134 0.92356 0.75510 0.81222 0.82559 0.82900 0.87751 0.89183 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.57 37.15 0.36 -2.52 16 2 C -0.13 -2.70 5.45 -26.74 -0.15 -2.84 16 3 C 0.28 5.98 2.26 -69.08 -0.16 5.83 16 4 H 0.05 1.09 7.71 -51.93 -0.40 0.69 16 5 C -0.54 -12.46 8.84 -34.44 -0.30 -12.77 16 6 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 7 C 0.07 1.66 5.29 -17.82 -0.09 1.56 16 8 N -0.88 -22.80 11.29 55.43 0.63 -22.17 16 9 Si 0.89 19.31 29.54 -169.99 -5.02 14.29 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 N -1.09 -19.09 3.63 -5.88 -0.02 -19.11 16 14 S 2.69 45.93 4.80 -107.50 -0.52 45.41 16 15 O -0.97 -16.61 16.45 -57.17 -0.94 -17.55 16 16 O -0.95 -18.57 15.95 -57.17 -0.91 -19.48 16 17 C -0.67 -10.78 5.86 -39.58 -0.23 -11.02 16 18 C 0.05 0.89 9.06 -39.58 -0.36 0.53 16 19 C -0.07 -1.19 6.85 -79.95 -0.55 -1.73 16 20 N 0.03 0.58 4.45 33.96 0.15 0.73 16 21 O -0.17 -2.79 18.45 -29.46 -0.54 -3.33 16 22 O -0.16 -2.82 18.45 -29.46 -0.54 -3.36 16 23 C -0.01 -0.08 9.56 -39.58 -0.38 -0.46 16 24 C -0.14 -1.66 9.68 -39.58 -0.38 -2.05 16 25 C 0.08 1.11 5.87 -104.63 -0.61 0.50 16 26 C -0.15 -1.78 8.60 36.00 0.31 -1.47 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.70 7.32 -51.93 -0.38 0.32 16 30 H 0.10 2.51 5.94 -51.93 -0.31 2.20 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.41 6.14 8.62 -34.48 -0.30 5.85 16 34 H 0.17 2.81 6.89 -52.49 -0.36 2.45 16 35 H 0.16 1.60 7.61 -52.49 -0.40 1.20 16 36 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.10 1.07 8.00 -51.93 -0.42 0.66 16 38 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.09 1.12 5.48 -51.93 -0.28 0.83 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -29.21 345.46 -9.57 -38.78 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.50 Total: 7.02 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -2.55 Total: -26.44 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.76 Total: -40.54 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -2.94 Total: -43.72 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 45.93 SS G_CDS: -0.52 Total: 45.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.21 -9.57 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.116 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds