Wall clock time and date at job start Tue Mar 31 2020 16:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47511 * 2 1 4 4 H 1.09005 * 109.46943 * 54.41609 * 3 2 1 5 5 C 1.50703 * 109.47267 * 174.41816 * 3 2 1 6 6 H 1.08001 * 119.99691 * 119.99960 * 5 3 2 7 7 C 1.37879 * 119.99926 * 299.99793 * 5 3 2 8 8 N 1.31515 * 119.99902 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99729 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47005 * 90.00253 * 9 7 5 11 11 H 1.48500 * 109.47060 * 210.00406 * 9 7 5 12 12 H 1.48495 * 109.47315 * 330.00278 * 9 7 5 13 13 N 1.46506 * 109.47136 * 294.42012 * 3 2 1 14 14 S 1.65602 * 120.00008 * 119.38339 * 13 3 2 15 15 O 1.42093 * 106.40001 * 177.16157 * 14 13 3 16 16 O 1.42102 * 106.40045 * 310.08072 * 14 13 3 17 17 C 1.76199 * 107.21593 * 63.62401 * 14 13 3 18 18 C 1.38260 * 119.99759 * 244.83431 * 17 14 13 19 19 C 1.38215 * 119.99875 * 179.77002 * 18 17 14 20 20 N 1.48022 * 120.00021 * 180.23130 * 19 18 17 21 21 O 1.21795 * 119.99773 * 180.26843 * 20 19 18 22 22 O 1.21798 * 119.99761 * 0.27651 * 20 19 18 23 23 C 1.38256 * 119.99920 * 0.50210 * 19 18 17 24 24 C 1.38213 * 119.99916 * 359.74993 * 23 19 18 25 25 C 1.38211 * 120.00224 * 65.10834 * 17 14 13 26 26 C 1.50696 * 119.99977 * 0.02562 * 25 17 14 27 27 H 1.09001 * 109.47572 * 298.78740 * 1 2 3 28 28 H 1.09002 * 109.47217 * 178.78445 * 1 2 3 29 29 H 1.09002 * 109.47317 * 58.78991 * 1 2 3 30 30 H 1.09001 * 109.46993 * 120.00367 * 2 1 3 31 31 H 1.09004 * 109.46886 * 239.99732 * 2 1 3 32 32 H 0.96996 * 119.99864 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99448 * 299.38182 * 13 3 2 34 34 H 1.07998 * 120.00176 * 359.97438 * 18 17 14 35 35 H 1.07999 * 120.00054 * 179.72648 * 23 19 18 36 36 H 1.08004 * 119.99950 * 179.97438 * 24 23 19 37 37 H 1.08997 * 109.47259 * 84.31378 * 26 25 17 38 38 H 1.09000 * 109.47055 * 204.32136 * 26 25 17 39 39 H 1.09001 * 109.47225 * 324.31670 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9843 0.8358 5 6 3.5407 1.4446 0.1382 6 1 4.1534 1.8865 -0.6336 7 6 4.1314 0.8824 1.2500 8 7 3.3853 0.3439 2.1896 9 14 5.9915 0.8845 1.4209 10 1 6.4227 2.1199 2.1234 11 1 6.4181 -0.3039 2.2024 12 1 6.6126 0.8394 0.0728 13 7 1.6644 2.0932 -1.2577 14 16 0.6920 3.4335 -1.2383 15 8 0.5696 3.8599 -2.5882 16 8 -0.4244 3.1075 -0.4219 17 6 1.5724 4.7044 -0.3930 18 6 1.0951 5.1943 0.8085 19 6 1.7882 6.1879 1.4739 20 7 1.2798 6.7089 2.7628 21 8 1.8880 7.5878 3.3467 22 8 0.2534 6.2585 3.2394 23 6 2.9533 6.6990 0.9329 24 6 3.4277 6.2129 -0.2708 25 6 2.7372 5.2154 -0.9339 26 6 3.2539 4.6861 -2.2468 27 1 -0.3634 0.4949 0.9006 28 1 -0.3634 -1.0274 -0.0218 29 1 -0.3634 0.5325 -0.8789 30 1 1.8932 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 3.8008 -0.0512 2.9719 33 1 1.9854 1.7390 -2.1017 34 1 0.1823 4.7984 1.2287 35 1 3.4925 7.4785 1.4507 36 1 4.3377 6.6124 -0.6936 37 1 2.7569 5.2028 -3.0677 38 1 4.3289 4.8549 -2.3088 39 1 3.0495 3.6174 -2.3134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:49 Heat of formation + Delta-G solvation = -77.787814 kcal Electronic energy + Delta-G solvation = -27161.129548 eV Core-core repulsion = 23198.273884 eV Total energy + Delta-G solvation = -3962.855664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.40678 -40.74887 -38.50447 -37.81683 -37.76327 -37.02529 -34.66885 -34.15177 -32.83921 -32.29374 -29.76956 -28.57361 -26.29294 -24.95827 -24.83756 -23.10355 -21.97191 -21.28331 -20.19916 -19.93386 -18.97497 -18.77432 -18.22163 -17.62855 -17.37001 -17.01074 -16.84879 -16.14484 -15.51445 -15.35147 -15.18222 -14.89546 -14.71453 -13.83477 -13.61436 -13.56426 -13.54041 -13.38205 -13.32474 -13.22486 -13.08203 -12.99382 -12.82298 -12.72968 -12.62428 -12.45009 -12.42137 -12.20600 -11.98753 -11.78208 -11.52790 -11.37485 -10.96521 -10.50809 -10.47095 -10.04793 -8.11483 -6.26740 -1.36972 -0.76960 -0.52301 0.11398 0.22081 1.42275 1.46274 1.53771 1.80477 2.04788 2.43913 2.61603 3.11646 3.17450 3.27475 3.38449 3.48277 3.67341 3.87252 4.19622 4.33324 4.39001 4.45324 4.52568 4.59189 4.64528 4.67304 4.88511 4.92724 4.95192 5.09473 5.10293 5.33388 5.36056 5.43516 5.66599 5.78004 6.05577 6.13091 6.38045 6.41826 6.84458 7.43809 8.91888 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.006246 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.680211 B = 4481.582769 C = 5373.602820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.286 3.714 4 H 0.015 0.985 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.257 1.257 13 N -1.089 6.089 14 S 2.707 3.293 15 O -0.970 6.970 16 O -0.985 6.985 17 C -0.686 4.686 18 C 0.032 3.968 19 C -0.093 4.093 20 N 0.034 4.966 21 O -0.139 6.139 22 O -0.212 6.212 23 C 0.000 4.000 24 C -0.126 4.126 25 C 0.077 3.923 26 C -0.161 4.161 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.262 0.738 33 H 0.423 0.577 34 H 0.152 0.848 35 H 0.189 0.811 36 H 0.205 0.795 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 9.894 -9.036 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.181 3.819 4 H 0.033 0.967 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.180 1.180 13 N -0.852 5.852 14 S 2.795 3.205 15 O -0.960 6.960 16 O -0.975 6.975 17 C -0.772 4.772 18 C 0.012 3.988 19 C -0.177 4.177 20 N 0.550 4.450 21 O -0.363 6.363 22 O -0.415 6.415 23 C -0.018 4.018 24 C -0.145 4.145 25 C 0.075 3.925 26 C -0.217 4.217 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.259 0.741 34 H 0.170 0.830 35 H 0.206 0.794 36 H 0.222 0.778 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.535 9.644 -9.653 13.878 hybrid contribution 0.981 -0.062 1.373 1.689 sum 3.516 9.582 -8.279 13.143 Atomic orbital electron populations 1.21762 0.97226 1.00515 1.00503 1.21804 0.93639 0.98920 1.02241 1.18305 0.94272 0.90414 0.78953 0.96675 1.21764 0.91900 1.37980 1.05636 0.90295 1.25647 1.01933 0.94958 0.95667 1.70002 1.36558 1.38961 1.09835 0.85683 0.81011 0.77088 0.78653 1.20838 1.21897 1.18050 1.55279 1.70353 1.43285 1.16245 1.01400 0.73327 0.73046 0.72763 1.93552 1.86376 1.82363 1.33730 1.93558 1.49518 1.83370 1.71031 1.31049 1.13691 1.23168 1.09339 1.20719 0.97867 0.89381 0.90878 1.21299 1.02367 1.05881 0.88155 1.43729 0.99777 0.99061 1.02445 1.94445 1.57820 1.22676 1.61351 1.94585 1.13996 1.62849 1.70084 1.21739 0.89673 0.96035 0.94394 1.21790 1.02390 0.96694 0.93590 1.20450 0.87889 0.89149 0.95012 1.21643 1.05562 1.02546 0.91964 0.94891 0.92597 0.93502 0.90524 0.92899 0.92892 0.74051 0.83003 0.79352 0.77781 0.86270 0.85736 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 9.57 71.98 0.69 -4.93 16 2 C -0.13 -5.43 5.45 30.59 0.17 -5.26 16 3 C 0.29 12.38 2.26 44.24 0.10 12.48 16 4 H 0.02 0.77 7.71 -2.38 -0.02 0.75 16 5 C -0.53 -24.32 8.84 25.60 0.23 -24.09 16 6 H 0.08 3.29 7.81 -2.91 -0.02 3.27 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -48.40 11.29 21.45 0.24 -48.16 16 9 Si 0.95 38.73 29.54 68.60 2.03 40.75 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 13 N -1.09 -37.36 3.63 -172.51 -0.63 -37.98 16 14 S 2.71 92.44 4.80 -56.49 -0.27 92.17 16 15 O -0.97 -32.11 16.45 -128.00 -2.11 -34.22 16 16 O -0.98 -40.07 15.95 -128.00 -2.04 -42.11 16 17 C -0.69 -21.76 5.86 22.27 0.13 -21.63 16 18 C 0.03 1.10 9.06 22.27 0.20 1.30 16 19 C -0.09 -2.90 6.85 36.37 0.25 -2.65 16 20 N 0.03 1.17 4.45 -46.46 -0.21 0.96 16 21 O -0.14 -4.43 18.45 18.89 0.35 -4.09 16 22 O -0.21 -8.16 18.45 18.89 0.35 -7.81 16 23 C 0.00 0.01 9.56 22.27 0.21 0.22 16 24 C -0.13 -2.37 9.68 22.27 0.22 -2.15 16 25 C 0.08 1.87 5.87 -19.87 -0.12 1.75 16 26 C -0.16 -3.08 8.60 71.23 0.61 -2.46 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.73 7.32 -2.39 -0.02 1.71 16 30 H 0.08 3.78 5.94 -2.39 -0.01 3.77 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.42 12.07 8.62 -96.74 -0.83 11.23 16 34 H 0.15 5.57 6.89 -2.91 -0.02 5.55 16 35 H 0.19 2.96 7.61 -2.91 -0.02 2.93 16 36 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.12 1.96 8.00 -2.39 -0.02 1.94 16 38 H 0.12 1.52 8.05 -2.39 -0.02 1.50 16 39 H 0.08 1.68 5.48 -2.39 -0.01 1.66 16 Total: -1.00 -64.99 345.46 1.12 -63.87 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.27 Total: 22.70 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.14 Total: -46.08 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -0.59 Total: -85.18 kcal Atomic # 8 Polarization: -84.77 SS G_CDS: -3.45 Total: -88.23 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: 92.44 SS G_CDS: -0.27 Total: 92.17 kcal Total: -64.99 1.12 -63.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.917 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds