Wall clock time and date at job start Tue Mar 31 2020 16:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.09004 * 109.46913 * 180.54441 * 3 2 1 5 5 C 1.50693 * 109.47370 * 300.54856 * 3 2 1 6 6 H 1.07994 * 120.00543 * 119.99944 * 5 3 2 7 7 C 1.37882 * 120.00007 * 299.99862 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00080 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47018 * 90.00462 * 9 7 5 11 11 H 1.48500 * 109.47233 * 209.99965 * 9 7 5 12 12 H 1.48493 * 109.47269 * 330.00269 * 9 7 5 13 13 N 1.46501 * 109.47177 * 60.55151 * 3 2 1 14 14 S 1.65593 * 120.00413 * 96.02734 * 13 3 2 15 15 O 1.42100 * 106.40421 * 307.95664 * 14 13 3 16 16 O 1.42101 * 106.40305 * 175.03748 * 14 13 3 17 17 C 1.76196 * 107.22025 * 61.49775 * 14 13 3 18 18 C 1.38256 * 119.99833 * 89.99571 * 17 14 13 19 19 C 1.38223 * 119.99872 * 180.02562 * 18 17 14 20 20 C 1.38258 * 119.99911 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99999 * 179.97438 * 20 19 18 22 22 C 1.38214 * 120.00063 * 0.25098 * 20 19 18 23 23 N 1.48013 * 119.99972 * 179.72360 * 22 20 19 24 24 O 1.21808 * 120.00161 * 186.77034 * 23 22 20 25 25 O 1.21801 * 120.00205 * 6.77924 * 23 22 20 26 26 C 1.38214 * 119.99960 * 270.02662 * 17 14 13 27 27 H 1.08997 * 109.46920 * 65.01418 * 1 2 3 28 28 H 1.08995 * 109.46874 * 185.01544 * 1 2 3 29 29 H 1.09009 * 109.46585 * 305.01288 * 1 2 3 30 30 H 1.09009 * 109.46985 * 239.99941 * 2 1 3 31 31 H 1.09007 * 109.47345 * 120.00550 * 2 1 3 32 32 H 0.96997 * 120.00084 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99496 * 276.03069 * 13 3 2 34 34 H 1.07996 * 120.00151 * 0.02562 * 18 17 14 35 35 H 1.08000 * 119.99684 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.46670 * 96.94634 * 21 20 19 37 37 H 1.09000 * 109.47271 * 336.94913 * 21 20 19 38 38 H 1.08991 * 109.47572 * 216.94589 * 21 20 19 39 39 H 1.07995 * 120.00243 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 -0.0098 5 6 1.5267 2.1568 -1.2235 6 1 0.9068 3.0346 -1.1161 7 6 1.8485 1.6898 -2.4803 8 7 2.6030 0.6206 -2.6112 9 14 1.2116 2.5749 -3.9970 10 1 2.1857 3.6181 -4.4069 11 1 1.0368 1.5991 -5.1027 12 1 -0.0940 3.2110 -3.6872 13 7 1.5626 2.1292 1.2028 14 16 2.5341 2.2291 2.5400 15 8 2.9607 0.9041 2.8260 16 8 1.8432 3.0426 3.4782 17 6 3.9765 3.1258 2.0711 18 6 4.0070 4.5021 2.1995 19 6 5.1383 5.2056 1.8311 20 6 6.2392 4.5331 1.3338 21 6 7.4724 5.3002 0.9316 22 6 6.2066 3.1579 1.2001 23 7 7.3829 2.4385 0.6619 24 8 7.3126 1.2452 0.4281 25 8 8.4213 3.0398 0.4529 26 6 5.0772 2.4535 1.5743 27 1 -0.3633 0.4341 -0.9315 28 1 -0.3633 -1.0237 0.0898 29 1 -0.3633 0.5897 0.8418 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 2.8297 0.2922 -3.4953 33 1 0.6773 2.5255 1.2158 34 1 3.1469 5.0274 2.5876 35 1 5.1620 6.2807 1.9310 36 1 8.1938 5.2823 1.7486 37 1 7.2017 6.3322 0.7085 38 1 7.9137 4.8410 0.0472 39 1 5.0533 1.3785 1.4739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:22 Heat of formation + Delta-G solvation = -55.803388 kcal Electronic energy + Delta-G solvation = -26876.994111 eV Core-core repulsion = 22915.091764 eV Total energy + Delta-G solvation = -3961.902347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19170 -39.60499 -37.03102 -36.58405 -36.13090 -35.57819 -33.42616 -32.33598 -32.06565 -30.42130 -28.14681 -26.48273 -26.15891 -23.68261 -22.91393 -22.48600 -20.21347 -19.91768 -18.61242 -18.31258 -17.59867 -17.44831 -16.91395 -16.38841 -16.03485 -15.62999 -15.23237 -14.66588 -14.38721 -14.16236 -13.74753 -13.30141 -12.99565 -12.89439 -12.71620 -12.58003 -12.38645 -12.34495 -11.90266 -11.76042 -11.68661 -11.30618 -11.16221 -11.09217 -11.01524 -10.92934 -10.70559 -10.62014 -10.49197 -10.12856 -9.84759 -9.73702 -9.53664 -9.27689 -8.71901 -8.39929 -6.22382 -4.31173 -0.17389 0.40291 0.74136 1.30402 1.44225 2.86857 3.16229 3.24912 3.25711 3.45127 3.99111 4.09481 4.18646 4.25452 4.42940 4.59389 4.78726 5.04513 5.08958 5.14076 5.25587 5.31795 5.43105 5.62563 5.71206 5.84918 6.04798 6.09078 6.33871 6.45917 6.51993 6.55237 6.93806 7.18028 7.32800 7.40941 7.57456 7.63890 7.74436 7.93779 8.14321 8.70479 9.34913 10.82609 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.005705 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.767544 B = 4906.906972 C = 6081.608987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.136 4.136 3 C 0.277 3.723 4 H 0.038 0.962 5 C -0.526 4.526 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.273 1.273 13 N -1.093 6.093 14 S 2.690 3.310 15 O -0.952 6.952 16 O -0.974 6.974 17 C -0.676 4.676 18 C 0.034 3.966 19 C -0.147 4.147 20 C 0.028 3.972 21 C -0.138 4.138 22 C -0.069 4.069 23 N 0.034 4.966 24 O -0.150 6.150 25 O -0.166 6.166 26 C 0.059 3.941 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.413 0.587 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 8.826 7.710 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.176 4.176 3 C 0.173 3.827 4 H 0.056 0.944 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.856 5.856 14 S 2.775 3.225 15 O -0.942 6.942 16 O -0.964 6.964 17 C -0.759 4.759 18 C 0.015 3.985 19 C -0.166 4.166 20 C 0.027 3.973 21 C -0.194 4.194 22 C -0.153 4.153 23 N 0.552 4.448 24 O -0.368 6.368 25 O -0.378 6.378 26 C 0.039 3.961 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.248 0.752 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.909 8.649 8.627 12.826 hybrid contribution 0.073 0.828 -1.625 1.825 sum 3.982 9.477 7.002 12.438 Atomic orbital electron populations 1.21525 0.97564 0.98291 1.01078 1.21972 0.95190 0.98570 1.01868 1.18631 0.94117 0.89295 0.80630 0.94446 1.21166 1.33149 1.12476 0.89764 0.91752 1.24891 0.94869 0.94911 0.98955 1.69850 1.35840 1.22220 1.23879 0.86535 0.79271 0.79407 0.82455 1.20758 1.20972 1.19758 1.55526 1.27560 1.70796 1.31673 1.02113 0.73123 0.73982 0.73237 1.93606 1.82602 1.34738 1.83226 1.93543 1.72041 1.70501 1.60307 1.31501 1.20083 1.07250 1.17097 1.21334 0.97942 0.91885 0.87310 1.21229 0.92244 1.01145 1.01973 1.20130 0.97154 0.90635 0.89425 1.21411 0.93693 0.99823 1.04469 1.20991 0.89083 0.92605 1.12642 1.43442 1.01773 1.01192 0.98391 1.94616 1.90129 0.97357 1.54648 1.94424 1.18576 1.68231 1.56595 1.20829 0.88035 1.02295 0.84895 0.92212 0.95538 0.94831 0.88131 0.94782 0.92363 0.75211 0.82481 0.82909 0.88883 0.90421 0.87899 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.48 37.16 0.35 -2.19 16 2 C -0.14 -3.04 5.67 -26.73 -0.15 -3.19 16 3 C 0.28 6.10 2.49 -69.09 -0.17 5.93 16 4 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 5 C -0.53 -12.55 7.57 -34.44 -0.26 -12.81 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.88 -23.07 11.32 55.43 0.63 -22.44 16 9 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 N -1.09 -19.77 4.78 -5.88 -0.03 -19.79 16 14 S 2.69 45.53 5.65 -107.50 -0.61 44.92 16 15 O -0.95 -18.62 16.72 -57.17 -0.96 -19.58 16 16 O -0.97 -16.80 17.28 -57.17 -0.99 -17.79 16 17 C -0.68 -10.44 5.67 -39.58 -0.22 -10.66 16 18 C 0.03 0.43 9.52 -39.58 -0.38 0.05 16 19 C -0.15 -1.59 9.68 -39.58 -0.38 -1.97 16 20 C 0.03 0.36 5.88 -104.63 -0.62 -0.26 16 21 C -0.14 -1.35 8.69 36.00 0.31 -1.04 16 22 C -0.07 -1.09 6.83 -79.95 -0.55 -1.63 16 23 N 0.03 0.58 4.45 33.96 0.15 0.73 16 24 O -0.15 -2.82 18.47 -29.46 -0.54 -3.36 16 25 O -0.17 -2.63 15.37 -29.46 -0.45 -3.08 16 26 C 0.06 0.99 8.24 -39.58 -0.33 0.66 16 27 H 0.06 1.26 7.39 -51.93 -0.38 0.87 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.60 7.21 -51.92 -0.37 0.23 16 30 H 0.10 2.49 6.08 -51.92 -0.32 2.17 16 31 H 0.03 0.74 7.75 -51.92 -0.40 0.33 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.41 6.70 8.45 -34.47 -0.29 6.41 16 34 H 0.16 1.58 7.62 -52.49 -0.40 1.18 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 38 H 0.10 1.16 5.86 -51.93 -0.30 0.85 16 39 H 0.17 2.92 7.19 -52.49 -0.38 2.54 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -29.92 342.90 -9.58 -39.50 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.44 Total: 6.56 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -2.49 Total: -25.52 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.75 Total: -41.50 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -2.94 Total: -43.81 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 45.53 SS G_CDS: -0.61 Total: 44.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.92 -9.58 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.307 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds