Wall clock time and date at job start Tue Mar 31 2020 16:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.09004 * 109.46913 * 180.54441 * 3 2 1 5 5 C 1.50693 * 109.47370 * 300.54856 * 3 2 1 6 6 H 1.07994 * 120.00543 * 119.99944 * 5 3 2 7 7 C 1.37882 * 120.00007 * 299.99862 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00080 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47018 * 90.00462 * 9 7 5 11 11 H 1.48500 * 109.47233 * 209.99965 * 9 7 5 12 12 H 1.48493 * 109.47269 * 330.00269 * 9 7 5 13 13 N 1.46501 * 109.47177 * 60.55151 * 3 2 1 14 14 S 1.65593 * 120.00413 * 96.02734 * 13 3 2 15 15 O 1.42100 * 106.40421 * 307.95664 * 14 13 3 16 16 O 1.42101 * 106.40305 * 175.03748 * 14 13 3 17 17 C 1.76196 * 107.22025 * 61.49775 * 14 13 3 18 18 C 1.38256 * 119.99833 * 89.99571 * 17 14 13 19 19 C 1.38223 * 119.99872 * 180.02562 * 18 17 14 20 20 C 1.38258 * 119.99911 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99999 * 179.97438 * 20 19 18 22 22 C 1.38214 * 120.00063 * 0.25098 * 20 19 18 23 23 N 1.48013 * 119.99972 * 179.72360 * 22 20 19 24 24 O 1.21808 * 120.00161 * 186.77034 * 23 22 20 25 25 O 1.21801 * 120.00205 * 6.77924 * 23 22 20 26 26 C 1.38214 * 119.99960 * 270.02662 * 17 14 13 27 27 H 1.08997 * 109.46920 * 65.01418 * 1 2 3 28 28 H 1.08995 * 109.46874 * 185.01544 * 1 2 3 29 29 H 1.09009 * 109.46585 * 305.01288 * 1 2 3 30 30 H 1.09009 * 109.46985 * 239.99941 * 2 1 3 31 31 H 1.09007 * 109.47345 * 120.00550 * 2 1 3 32 32 H 0.96997 * 120.00084 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99496 * 276.03069 * 13 3 2 34 34 H 1.07996 * 120.00151 * 0.02562 * 18 17 14 35 35 H 1.08000 * 119.99684 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.46670 * 96.94634 * 21 20 19 37 37 H 1.09000 * 109.47271 * 336.94913 * 21 20 19 38 38 H 1.08991 * 109.47572 * 216.94589 * 21 20 19 39 39 H 1.07995 * 120.00243 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 -0.0098 5 6 1.5267 2.1568 -1.2235 6 1 0.9068 3.0346 -1.1161 7 6 1.8485 1.6898 -2.4803 8 7 2.6030 0.6206 -2.6112 9 14 1.2116 2.5749 -3.9970 10 1 2.1857 3.6181 -4.4069 11 1 1.0368 1.5991 -5.1027 12 1 -0.0940 3.2110 -3.6872 13 7 1.5626 2.1292 1.2028 14 16 2.5341 2.2291 2.5400 15 8 2.9607 0.9041 2.8260 16 8 1.8432 3.0426 3.4782 17 6 3.9765 3.1258 2.0711 18 6 4.0070 4.5021 2.1995 19 6 5.1383 5.2056 1.8311 20 6 6.2392 4.5331 1.3338 21 6 7.4724 5.3002 0.9316 22 6 6.2066 3.1579 1.2001 23 7 7.3829 2.4385 0.6619 24 8 7.3126 1.2452 0.4281 25 8 8.4213 3.0398 0.4529 26 6 5.0772 2.4535 1.5743 27 1 -0.3633 0.4341 -0.9315 28 1 -0.3633 -1.0237 0.0898 29 1 -0.3633 0.5897 0.8418 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 2.8297 0.2922 -3.4953 33 1 0.6773 2.5255 1.2158 34 1 3.1469 5.0274 2.5876 35 1 5.1620 6.2807 1.9310 36 1 8.1938 5.2823 1.7486 37 1 7.2017 6.3322 0.7085 38 1 7.9137 4.8410 0.0472 39 1 5.0533 1.3785 1.4739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:21 Heat of formation + Delta-G solvation = -75.236265 kcal Electronic energy + Delta-G solvation = -26877.836784 eV Core-core repulsion = 22915.091764 eV Total energy + Delta-G solvation = -3962.745020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.47980 -40.69056 -38.49935 -37.89400 -37.80753 -37.03430 -34.45951 -34.15069 -33.15547 -32.09551 -29.14970 -28.29739 -27.32672 -25.45884 -24.02040 -23.59249 -21.92112 -21.23163 -19.90663 -19.73347 -19.09353 -18.82941 -18.11167 -18.00196 -17.31200 -16.95413 -16.70281 -16.18720 -15.41417 -15.35069 -15.09770 -14.95154 -14.56568 -14.13532 -13.93166 -13.64552 -13.57789 -13.55189 -13.46462 -13.28366 -13.16109 -12.85086 -12.69500 -12.60432 -12.45888 -12.39213 -12.27331 -12.13374 -11.87151 -11.79704 -11.51072 -11.08160 -10.94392 -10.61144 -10.50600 -10.10047 -8.12616 -6.26158 -1.35027 -0.80725 -0.55369 0.11928 0.23111 1.41662 1.45450 1.53360 1.76608 2.07836 2.43493 2.63488 3.03908 3.13060 3.17829 3.37059 3.57518 3.66964 3.88840 4.20949 4.24457 4.40556 4.51778 4.59399 4.62231 4.67312 4.76405 4.85104 4.88742 4.94386 5.07825 5.22226 5.40449 5.45467 5.53812 5.67958 5.70727 6.06621 6.08757 6.39550 6.41775 6.83897 7.42806 8.91813 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.005705 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.767544 B = 4906.906972 C = 6081.608987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.283 3.717 4 H 0.016 0.984 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.261 1.261 13 N -1.091 6.091 14 S 2.709 3.291 15 O -0.987 6.987 16 O -0.972 6.972 17 C -0.687 4.687 18 C 0.035 3.965 19 C -0.126 4.126 20 C 0.032 3.968 21 C -0.138 4.138 22 C -0.091 4.091 23 N 0.034 4.966 24 O -0.234 6.234 25 O -0.115 6.115 26 C 0.036 3.964 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.422 0.578 34 H 0.189 0.811 35 H 0.209 0.791 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 13.062 8.384 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.178 3.822 4 H 0.034 0.966 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.854 5.854 14 S 2.797 3.203 15 O -0.977 6.977 16 O -0.962 6.962 17 C -0.773 4.773 18 C 0.016 3.984 19 C -0.144 4.144 20 C 0.031 3.969 21 C -0.194 4.194 22 C -0.175 4.175 23 N 0.548 4.452 24 O -0.431 6.431 25 O -0.344 6.344 26 C 0.015 3.985 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.259 0.741 34 H 0.206 0.794 35 H 0.226 0.774 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.328 12.707 9.314 16.102 hybrid contribution 0.348 -0.255 -1.749 1.801 sum 3.676 12.451 7.565 15.026 Atomic orbital electron populations 1.21454 0.95519 0.99619 1.01231 1.21920 0.97044 0.98641 1.00240 1.18299 0.92930 0.89334 0.81648 0.96613 1.21471 1.32341 1.12384 0.90210 0.90784 1.25605 0.95249 0.95513 1.01628 1.70006 1.37409 1.23787 1.23989 0.85651 0.79108 0.78156 0.79304 1.20763 1.21630 1.18474 1.55291 1.28613 1.70888 1.30592 1.01300 0.73045 0.73329 0.72612 1.93563 1.83108 1.37292 1.83725 1.93537 1.72441 1.70228 1.59959 1.31136 1.18571 1.08808 1.18822 1.21858 0.99827 0.90409 0.86270 1.21858 0.90122 1.03455 0.99007 1.20700 0.99046 0.89047 0.88138 1.21550 0.92537 1.01236 1.04087 1.21231 0.88251 0.93965 1.14085 1.43693 1.02320 1.01035 0.98152 1.94642 1.90920 0.98565 1.58933 1.94359 1.18748 1.67611 1.53640 1.20694 0.89520 1.01529 0.86743 0.93374 0.94050 0.92857 0.91009 0.95205 0.92840 0.74114 0.79404 0.77405 0.87102 0.86561 0.89572 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.48 71.98 0.68 -4.12 16 2 C -0.14 -6.40 5.67 30.59 0.17 -6.23 16 3 C 0.28 12.77 2.49 44.24 0.11 12.88 16 4 H 0.02 0.80 6.93 -2.39 -0.02 0.78 16 5 C -0.52 -25.01 7.57 25.60 0.19 -24.81 16 6 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 7 C 0.02 1.03 5.30 84.66 0.45 1.48 16 8 N -0.91 -49.63 11.32 21.45 0.24 -49.39 16 9 Si 0.95 40.27 29.54 68.60 2.03 42.30 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 N -1.09 -39.22 4.78 -172.53 -0.82 -40.05 16 14 S 2.71 91.60 5.65 -56.49 -0.32 91.28 16 15 O -0.99 -40.35 16.72 -128.00 -2.14 -42.49 16 16 O -0.97 -31.86 17.28 -128.00 -2.21 -34.07 16 17 C -0.69 -20.86 5.67 22.27 0.13 -20.74 16 18 C 0.04 0.76 9.52 22.27 0.21 0.97 16 19 C -0.13 -2.08 9.68 22.27 0.22 -1.87 16 20 C 0.03 0.71 5.88 -19.87 -0.12 0.59 16 21 C -0.14 -2.08 8.69 71.23 0.62 -1.46 16 22 C -0.09 -2.87 6.83 36.38 0.25 -2.62 16 23 N 0.03 1.19 4.45 -46.46 -0.21 0.98 16 24 O -0.23 -9.68 18.47 18.88 0.35 -9.34 16 25 O -0.11 -3.54 15.37 18.88 0.29 -3.25 16 26 C 0.04 1.24 8.24 22.27 0.18 1.42 16 27 H 0.05 2.00 7.39 -2.39 -0.02 1.99 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.87 7.21 -2.38 -0.02 1.85 16 30 H 0.07 3.75 6.08 -2.38 -0.01 3.73 16 31 H 0.03 1.35 7.75 -2.38 -0.02 1.34 16 32 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.42 13.17 8.45 -96.75 -0.82 12.35 16 34 H 0.19 2.85 7.62 -2.91 -0.02 2.83 16 35 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 0.92 8.04 -2.39 -0.02 0.90 16 38 H 0.09 1.65 5.86 -2.39 -0.01 1.64 16 39 H 0.14 5.59 7.19 -2.91 -0.02 5.57 16 Total: -1.00 -68.43 342.90 0.59 -67.84 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.29 Total: 20.68 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.10 Total: -44.50 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -0.79 Total: -88.45 kcal Atomic # 8 Polarization: -85.44 SS G_CDS: -3.71 Total: -89.15 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 91.60 SS G_CDS: -0.32 Total: 91.28 kcal Total: -68.43 0.59 -67.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.396 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds