Wall clock time and date at job start Tue Mar 31 2020 16:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 H 1.08993 * 109.47347 * 54.65417 * 3 2 1 5 5 C 1.50700 * 109.47028 * 174.65269 * 3 2 1 6 6 H 1.08000 * 120.00484 * 120.00169 * 5 3 2 7 7 C 1.37879 * 119.99830 * 299.99796 * 5 3 2 8 8 N 1.31518 * 120.00286 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99951 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47441 * 89.99821 * 9 7 5 11 11 H 1.48508 * 109.47185 * 209.99798 * 9 7 5 12 12 H 1.48502 * 109.47095 * 329.99661 * 9 7 5 13 13 N 1.46505 * 109.47066 * 294.64808 * 3 2 1 14 14 S 1.65604 * 119.99451 * 144.20566 * 13 3 2 15 15 O 1.42098 * 104.27624 * 307.62397 * 14 13 3 16 16 O 1.42101 * 104.27070 * 179.76704 * 14 13 3 17 17 C 1.81397 * 104.45086 * 63.69852 * 14 13 3 18 18 C 1.50703 * 109.46992 * 179.97438 * 17 14 13 19 19 C 1.38231 * 119.99967 * 269.72562 * 18 17 14 20 20 C 1.38234 * 119.99403 * 179.76600 * 19 18 17 21 21 C 1.38230 * 120.00841 * 0.48722 * 20 19 18 22 22 N 1.48010 * 120.00621 * 179.76938 * 21 20 19 23 23 O 1.21805 * 120.00119 * 180.02562 * 22 21 20 24 24 O 1.21805 * 120.00093 * 0.02562 * 22 21 20 25 25 C 1.38242 * 119.99472 * 359.78893 * 21 20 19 26 26 C 1.38234 * 119.99781 * 359.95555 * 25 21 20 27 27 H 1.08997 * 109.46859 * 295.70177 * 1 2 3 28 28 H 1.09000 * 109.47117 * 55.70550 * 1 2 3 29 29 H 1.08992 * 109.47217 * 175.70417 * 1 2 3 30 30 H 1.09001 * 109.47085 * 240.00486 * 2 1 3 31 31 H 1.08998 * 109.47387 * 120.00218 * 2 1 3 32 32 H 0.96993 * 120.00161 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99883 * 324.20178 * 13 3 2 34 34 H 1.08996 * 109.47438 * 59.99492 * 17 14 13 35 35 H 1.09003 * 109.46958 * 299.99335 * 17 14 13 36 36 H 1.07995 * 120.00125 * 0.02562 * 19 18 17 37 37 H 1.08009 * 119.99638 * 180.25281 * 20 19 18 38 38 H 1.07994 * 120.00223 * 179.97438 * 25 21 20 39 39 H 1.08005 * 119.99384 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9832 0.8382 5 6 3.5411 1.4446 0.1324 6 1 4.1509 1.8876 -0.6411 7 6 4.1362 0.8810 1.2412 8 7 5.4463 0.8823 1.3566 9 14 3.0816 0.1141 2.5788 10 1 2.8624 -1.3226 2.2738 11 1 3.7713 0.2427 3.8876 12 1 1.7725 0.8128 2.6384 13 7 1.6596 2.0949 -1.2554 14 16 1.2439 3.6979 -1.2625 15 8 0.2440 3.8051 -0.2587 16 8 0.9481 3.9770 -2.6241 17 6 2.7555 4.5599 -0.7500 18 6 2.5008 6.0449 -0.7185 19 6 2.7303 6.8096 -1.8469 20 6 2.4921 8.1710 -1.8193 21 6 2.0339 8.7693 -0.6604 22 7 1.7837 10.2278 -0.6294 23 8 1.3805 10.7549 0.3919 24 8 1.9810 10.9008 -1.6252 25 6 1.8099 8.0054 0.4698 26 6 2.0431 6.6432 0.4406 27 1 -0.3633 0.4457 0.9260 28 1 -0.3633 0.5790 -0.8490 29 1 -0.3633 -1.0247 -0.0770 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8648 0.4861 2.1367 33 1 1.6514 1.5880 -2.0823 34 1 3.5551 4.3437 -1.4585 35 1 3.0485 4.2200 0.2434 36 1 3.0917 6.3429 -2.7512 37 1 2.6675 8.7679 -2.7022 38 1 1.4524 8.4727 1.3753 39 1 1.8676 6.0463 1.3235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:01 Heat of formation + Delta-G solvation = -53.233459 kcal Electronic energy + Delta-G solvation = -25911.060468 eV Core-core repulsion = 21949.269561 eV Total energy + Delta-G solvation = -3961.790907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31226 -39.80923 -36.98659 -36.69790 -36.42178 -35.71497 -33.77702 -32.47257 -31.68715 -31.25264 -28.99329 -27.40847 -25.43343 -23.47424 -22.91779 -22.02102 -20.83668 -19.53477 -19.16754 -18.80416 -17.67995 -17.60516 -17.04486 -16.57423 -16.12347 -15.66511 -15.59770 -14.98918 -14.89687 -14.27583 -14.12248 -13.70214 -13.50183 -12.92681 -12.76262 -12.57206 -12.41941 -12.24235 -11.94517 -11.82541 -11.77884 -11.71642 -11.61123 -11.40503 -11.34875 -11.27413 -11.14311 -10.97920 -10.73367 -10.25322 -10.00665 -9.66989 -9.64208 -9.45213 -8.87657 -8.55574 -6.41364 -4.46686 -0.43516 0.49571 0.69035 1.20716 1.24123 3.00260 3.05386 3.06572 3.18480 3.19923 3.81321 4.09607 4.10804 4.21808 4.26780 4.38802 4.66231 4.67027 4.87934 5.01727 5.14156 5.39885 5.42767 5.49836 5.64166 5.69692 5.77499 5.85820 5.89740 6.01497 6.05344 6.28701 6.34095 6.44568 6.51977 6.75953 7.02590 7.26408 7.50182 7.59684 8.13934 8.59118 9.18436 10.70038 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.003495 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.547688 B = 8008.698710 C = 8619.159401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.553 4.553 6 H 0.084 0.916 7 C 0.081 3.919 8 N -0.885 5.885 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.259 1.259 13 N -1.093 6.093 14 S 2.616 3.384 15 O -0.955 6.955 16 O -0.970 6.970 17 C -0.598 4.598 18 C -0.025 4.025 19 C -0.109 4.109 20 C -0.051 4.051 21 C -0.049 4.049 22 N 0.031 4.969 23 O -0.162 6.162 24 O -0.163 6.163 25 C -0.050 4.050 26 C -0.107 4.107 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.411 0.589 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 7.637 -3.575 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C 0.136 3.864 4 H 0.068 0.932 5 C -0.591 4.591 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.521 5.521 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.183 1.183 13 N -0.852 5.852 14 S 2.707 3.293 15 O -0.945 6.945 16 O -0.961 6.961 17 C -0.723 4.723 18 C -0.027 4.027 19 C -0.129 4.129 20 C -0.071 4.071 21 C -0.132 4.132 22 N 0.550 4.450 23 O -0.378 6.378 24 O -0.378 6.378 25 C -0.069 4.069 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.725 7.329 -3.516 9.943 hybrid contribution 0.486 -0.516 0.685 0.986 sum -5.239 6.813 -2.832 9.049 Atomic orbital electron populations 1.21865 0.97245 1.00397 1.01810 1.22122 0.94089 0.98939 1.01969 1.19088 0.95690 0.90593 0.81049 0.93250 1.21437 0.89297 1.40977 1.07421 0.89803 1.24916 0.94812 0.94940 0.97766 1.69862 1.08898 1.43841 1.29532 0.87047 0.81048 0.80420 0.81185 1.19955 1.21934 1.18348 1.55268 1.86085 1.26548 1.17332 1.04692 0.76168 0.74357 0.74125 1.93586 1.53350 1.85939 1.61611 1.93559 1.83565 1.84718 1.34218 1.29983 1.24766 1.00628 1.16960 1.19710 0.94782 0.94220 0.93979 1.21292 0.99969 0.92249 0.99354 1.21049 0.93923 0.95326 0.96754 1.21181 1.13126 0.80159 0.98782 1.43611 0.97767 1.03475 1.00156 1.94538 1.47094 1.74348 1.21783 1.94532 1.55427 1.62638 1.25244 1.21078 0.94933 0.93559 0.97360 1.21357 0.98598 0.93572 0.99071 0.93086 0.92764 0.93718 0.91436 0.92204 0.92108 0.75494 0.82857 0.81514 0.82611 0.82461 0.82396 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.85 37.16 0.37 -2.15 16 2 C -0.13 -2.44 5.03 -26.73 -0.13 -2.58 16 3 C 0.24 4.71 1.75 -69.08 -0.12 4.59 16 4 H 0.05 1.00 6.58 -51.93 -0.34 0.66 16 5 C -0.55 -12.57 8.75 -34.44 -0.30 -12.87 16 6 H 0.08 2.01 8.06 -52.49 -0.42 1.58 16 7 C 0.08 1.98 5.45 -17.82 -0.10 1.89 16 8 N -0.89 -23.59 13.96 55.43 0.77 -22.82 16 9 Si 0.87 18.97 24.41 -169.99 -4.15 14.82 16 10 H -0.27 -5.82 6.83 56.52 0.39 -5.43 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.26 -5.36 6.53 56.52 0.37 -4.99 16 13 N -1.09 -18.02 4.74 -5.88 -0.03 -18.05 16 14 S 2.62 41.15 5.41 -107.50 -0.58 40.57 16 15 O -0.95 -17.40 17.45 -57.54 -1.00 -18.40 16 16 O -0.97 -16.49 18.08 -57.54 -1.04 -17.53 16 17 C -0.60 -7.95 5.83 36.01 0.21 -7.74 16 18 C -0.02 -0.31 5.14 -104.62 -0.54 -0.84 16 19 C -0.11 -1.19 9.70 -39.59 -0.38 -1.57 16 20 C -0.05 -0.55 9.55 -39.59 -0.38 -0.93 16 21 C -0.05 -0.60 6.85 -79.95 -0.55 -1.14 16 22 N 0.03 0.42 4.45 33.96 0.15 0.57 16 23 O -0.16 -2.28 18.45 -29.46 -0.54 -2.82 16 24 O -0.16 -2.27 18.45 -29.46 -0.54 -2.81 16 25 C -0.05 -0.56 9.56 -39.58 -0.38 -0.94 16 26 C -0.11 -1.23 9.70 -39.58 -0.38 -1.61 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.19 3.21 -51.93 -0.17 1.02 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.41 5.98 8.81 -34.48 -0.30 5.68 16 34 H 0.15 1.80 8.08 -51.93 -0.42 1.38 16 35 H 0.17 2.31 7.75 -51.92 -0.40 1.91 16 36 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.16 1.37 7.61 -52.48 -0.40 0.97 16 38 H 0.16 1.45 7.61 -52.49 -0.40 1.05 16 39 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -30.04 347.24 -8.97 -39.01 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.55 Total: 8.12 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -2.69 Total: -25.91 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.90 Total: -40.30 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -3.13 Total: -41.56 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.15 Total: 14.82 kcal Atomic # 16 Polarization: 41.15 SS G_CDS: -0.58 Total: 40.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.04 -8.97 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.220 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds