Wall clock time and date at job start Tue Mar 31 2020 16:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 H 1.08993 * 109.47347 * 54.65417 * 3 2 1 5 5 C 1.50700 * 109.47028 * 174.65269 * 3 2 1 6 6 H 1.08000 * 120.00484 * 120.00169 * 5 3 2 7 7 C 1.37879 * 119.99830 * 299.99796 * 5 3 2 8 8 N 1.31518 * 120.00286 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99951 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47441 * 89.99821 * 9 7 5 11 11 H 1.48508 * 109.47185 * 209.99798 * 9 7 5 12 12 H 1.48502 * 109.47095 * 329.99661 * 9 7 5 13 13 N 1.46505 * 109.47066 * 294.64808 * 3 2 1 14 14 S 1.65604 * 119.99451 * 144.20566 * 13 3 2 15 15 O 1.42098 * 104.27624 * 307.62397 * 14 13 3 16 16 O 1.42101 * 104.27070 * 179.76704 * 14 13 3 17 17 C 1.81397 * 104.45086 * 63.69852 * 14 13 3 18 18 C 1.50703 * 109.46992 * 179.97438 * 17 14 13 19 19 C 1.38231 * 119.99967 * 269.72562 * 18 17 14 20 20 C 1.38234 * 119.99403 * 179.76600 * 19 18 17 21 21 C 1.38230 * 120.00841 * 0.48722 * 20 19 18 22 22 N 1.48010 * 120.00621 * 179.76938 * 21 20 19 23 23 O 1.21805 * 120.00119 * 180.02562 * 22 21 20 24 24 O 1.21805 * 120.00093 * 0.02562 * 22 21 20 25 25 C 1.38242 * 119.99472 * 359.78893 * 21 20 19 26 26 C 1.38234 * 119.99781 * 359.95555 * 25 21 20 27 27 H 1.08997 * 109.46859 * 295.70177 * 1 2 3 28 28 H 1.09000 * 109.47117 * 55.70550 * 1 2 3 29 29 H 1.08992 * 109.47217 * 175.70417 * 1 2 3 30 30 H 1.09001 * 109.47085 * 240.00486 * 2 1 3 31 31 H 1.08998 * 109.47387 * 120.00218 * 2 1 3 32 32 H 0.96993 * 120.00161 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99883 * 324.20178 * 13 3 2 34 34 H 1.08996 * 109.47438 * 59.99492 * 17 14 13 35 35 H 1.09003 * 109.46958 * 299.99335 * 17 14 13 36 36 H 1.07995 * 120.00125 * 0.02562 * 19 18 17 37 37 H 1.08009 * 119.99638 * 180.25281 * 20 19 18 38 38 H 1.07994 * 120.00223 * 179.97438 * 25 21 20 39 39 H 1.08005 * 119.99384 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9832 0.8382 5 6 3.5411 1.4446 0.1324 6 1 4.1509 1.8876 -0.6411 7 6 4.1362 0.8810 1.2412 8 7 5.4463 0.8823 1.3566 9 14 3.0816 0.1141 2.5788 10 1 2.8624 -1.3226 2.2738 11 1 3.7713 0.2427 3.8876 12 1 1.7725 0.8128 2.6384 13 7 1.6596 2.0949 -1.2554 14 16 1.2439 3.6979 -1.2625 15 8 0.2440 3.8051 -0.2587 16 8 0.9481 3.9770 -2.6241 17 6 2.7555 4.5599 -0.7500 18 6 2.5008 6.0449 -0.7185 19 6 2.7303 6.8096 -1.8469 20 6 2.4921 8.1710 -1.8193 21 6 2.0339 8.7693 -0.6604 22 7 1.7837 10.2278 -0.6294 23 8 1.3805 10.7549 0.3919 24 8 1.9810 10.9008 -1.6252 25 6 1.8099 8.0054 0.4698 26 6 2.0431 6.6432 0.4406 27 1 -0.3633 0.4457 0.9260 28 1 -0.3633 0.5790 -0.8490 29 1 -0.3633 -1.0247 -0.0770 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8648 0.4861 2.1367 33 1 1.6514 1.5880 -2.0823 34 1 3.5551 4.3437 -1.4585 35 1 3.0485 4.2200 0.2434 36 1 3.0917 6.3429 -2.7512 37 1 2.6675 8.7679 -2.7022 38 1 1.4524 8.4727 1.3753 39 1 1.8676 6.0463 1.3235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:01 Heat of formation + Delta-G solvation = -73.027002 kcal Electronic energy + Delta-G solvation = -25911.918780 eV Core-core repulsion = 21949.269561 eV Total energy + Delta-G solvation = -3962.649219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.33185 -40.71983 -38.36797 -37.87094 -37.74847 -37.05263 -34.76195 -34.27582 -32.61049 -32.55209 -30.03756 -29.04068 -26.46053 -24.50033 -24.34410 -23.00280 -22.33097 -20.49644 -20.46666 -19.83649 -19.10189 -18.69444 -18.57221 -17.78839 -17.41599 -16.87312 -16.64273 -16.34606 -15.83161 -15.72204 -15.21573 -14.95536 -14.53163 -14.44388 -13.99458 -13.89531 -13.67582 -13.54121 -13.29477 -13.20865 -13.12230 -12.85439 -12.81643 -12.55205 -12.52368 -12.45409 -12.35261 -12.29597 -12.23828 -11.72310 -11.62999 -11.26974 -10.70784 -10.52411 -10.52045 -10.01860 -8.29911 -6.35564 -1.45502 -0.71671 -0.16377 0.19635 0.26315 1.33793 1.42999 1.48375 1.77943 2.10222 2.31871 2.64609 3.04697 3.13589 3.16941 3.30073 3.41562 3.68286 3.77784 4.10752 4.21074 4.22469 4.29155 4.47716 4.49536 4.57561 4.64169 4.65539 4.75996 4.93038 4.99625 5.05217 5.07562 5.15968 5.34308 5.35565 5.53058 5.57141 6.23290 6.36668 6.42946 6.73518 7.32337 8.84167 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.003495 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.547688 B = 8008.698710 C = 8619.159401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.243 3.757 4 H 0.047 0.953 5 C -0.535 4.535 6 H 0.066 0.934 7 C 0.033 3.967 8 N -0.933 5.933 9 Si 0.916 3.084 10 H -0.266 1.266 11 H -0.302 1.302 12 H -0.243 1.243 13 N -1.092 6.092 14 S 2.624 3.376 15 O -0.981 6.981 16 O -0.982 6.982 17 C -0.584 4.584 18 C -0.041 4.041 19 C -0.109 4.109 20 C -0.048 4.048 21 C -0.060 4.060 22 N 0.031 4.969 23 O -0.177 6.177 24 O -0.169 6.169 25 C -0.049 4.049 26 C -0.113 4.113 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.420 0.580 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 7.615 -4.135 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C 0.136 3.864 4 H 0.065 0.935 5 C -0.574 4.574 6 H 0.085 0.915 7 C -0.167 4.167 8 N -0.572 5.572 9 Si 0.743 3.257 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.167 1.167 13 N -0.852 5.852 14 S 2.718 3.282 15 O -0.971 6.971 16 O -0.972 6.972 17 C -0.712 4.712 18 C -0.043 4.043 19 C -0.128 4.128 20 C -0.067 4.067 21 C -0.143 4.143 22 N 0.548 4.452 23 O -0.391 6.391 24 O -0.385 6.385 25 C -0.068 4.068 26 C -0.133 4.133 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.196 0.804 38 H 0.192 0.808 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.764 7.294 -4.095 10.757 hybrid contribution 0.821 -0.433 0.766 1.204 sum -5.943 6.861 -3.328 9.668 Atomic orbital electron populations 1.21846 0.95246 1.02089 1.01914 1.22108 0.95951 0.97723 1.01833 1.18895 0.93456 0.91787 0.82216 0.93512 1.21690 0.91011 1.38646 1.06041 0.91538 1.25526 0.95388 0.95916 0.99869 1.69979 1.10555 1.46220 1.30408 0.86355 0.80364 0.80303 0.78644 1.19251 1.22980 1.16656 1.55127 1.86042 1.27214 1.16822 1.04363 0.76460 0.73976 0.73446 1.93550 1.55316 1.86154 1.62118 1.93541 1.84209 1.84705 1.34789 1.29772 1.23228 1.01228 1.16962 1.19786 0.95931 0.93603 0.94993 1.21584 0.99255 0.92215 0.99731 1.21316 0.92910 0.95427 0.97018 1.21396 1.13913 0.79260 0.99779 1.43814 0.97441 1.04073 0.99914 1.94532 1.47739 1.74850 1.21936 1.94518 1.55527 1.63180 1.25261 1.21264 0.94413 0.93350 0.97798 1.21560 0.98395 0.93879 0.99440 0.93502 0.92101 0.91385 0.90598 0.93387 0.92441 0.74484 0.81243 0.82066 0.80325 0.80418 0.80849 0.81264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.85 71.98 0.71 -3.84 16 2 C -0.14 -4.78 5.03 30.60 0.15 -4.63 16 3 C 0.24 9.12 1.75 44.25 0.08 9.20 16 4 H 0.05 1.82 6.58 -2.39 -0.02 1.80 16 5 C -0.53 -23.99 8.75 25.60 0.22 -23.77 16 6 H 0.07 3.17 8.06 -2.91 -0.02 3.14 16 7 C 0.03 1.63 5.45 84.65 0.46 2.09 16 8 N -0.93 -50.36 13.96 21.45 0.30 -50.06 16 9 Si 0.92 38.41 24.41 68.60 1.67 40.08 16 10 H -0.27 -10.79 6.83 99.48 0.68 -10.12 16 11 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.24 -9.44 6.53 99.48 0.65 -8.79 16 13 N -1.09 -34.30 4.74 -172.52 -0.82 -35.12 16 14 S 2.62 78.58 5.41 -56.49 -0.31 78.27 16 15 O -0.98 -34.48 17.45 -127.65 -2.23 -36.71 16 16 O -0.98 -31.64 18.08 -127.65 -2.31 -33.95 16 17 C -0.58 -14.61 5.83 71.24 0.42 -14.20 16 18 C -0.04 -0.93 5.14 -19.87 -0.10 -1.03 16 19 C -0.11 -2.11 9.70 22.27 0.22 -1.89 16 20 C -0.05 -0.92 9.55 22.27 0.21 -0.71 16 21 C -0.06 -1.36 6.85 36.38 0.25 -1.11 16 22 N 0.03 0.81 4.45 -46.47 -0.21 0.60 16 23 O -0.18 -4.85 18.45 18.88 0.35 -4.50 16 24 O -0.17 -4.52 18.45 18.88 0.35 -4.17 16 25 C -0.05 -1.02 9.56 22.27 0.21 -0.81 16 26 C -0.11 -2.44 9.70 22.27 0.22 -2.23 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.70 7.65 -2.39 -0.02 1.69 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 1.80 3.21 -2.39 -0.01 1.79 16 32 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 33 H 0.42 11.50 8.81 -96.75 -0.85 10.64 16 34 H 0.17 3.66 8.08 -2.39 -0.02 3.64 16 35 H 0.16 4.30 7.75 -2.39 -0.02 4.28 16 36 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.18 2.63 7.61 -2.91 -0.02 2.61 16 38 H 0.17 2.94 7.61 -2.91 -0.02 2.92 16 39 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -63.00 347.24 0.01 -62.99 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.16 Total: 25.49 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.05 Total: -42.92 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -0.72 Total: -84.58 kcal Atomic # 8 Polarization: -75.50 SS G_CDS: -3.84 Total: -79.34 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.67 Total: 40.08 kcal Atomic # 16 Polarization: 78.58 SS G_CDS: -0.31 Total: 78.27 kcal Total: -63.00 0.01 -62.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.038 kcal (2) G-P(sol) polarization free energy of solvation -63.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds