Wall clock time and date at job start Tue Mar 31 2020 16:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38131 * 119.98828 * 359.97438 * 3 2 1 5 5 C 1.39813 * 119.86542 * 179.97438 * 4 3 2 6 6 C 1.47416 * 120.07899 * 179.97438 * 5 4 3 7 7 O 1.21545 * 119.99730 * 0.02562 * 6 5 4 8 8 O 1.34767 * 119.99951 * 180.02562 * 6 5 4 9 9 C 1.34864 * 117.00009 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99903 * 359.97438 * 9 8 6 11 11 C 1.38789 * 120.00130 * 180.02562 * 9 8 6 12 12 N 1.31426 * 120.00309 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 120.00101 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47279 * 59.99700 * 13 11 9 15 15 H 1.48499 * 109.47180 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46629 * 299.99727 * 13 11 9 17 17 C 1.39811 * 119.84499 * 0.02562 * 5 4 3 18 18 C 1.37851 * 119.98068 * 359.97438 * 17 5 4 19 19 Cl 1.73599 * 119.93199 * 179.97438 * 18 17 5 20 20 C 1.38963 * 120.13706 * 359.72986 * 18 17 5 21 21 O 1.35814 * 119.92413 * 180.29560 * 20 18 17 22 22 C 1.42904 * 116.99616 * 270.25243 * 21 20 18 23 23 C 1.53001 * 109.46579 * 180.02562 * 22 21 20 24 24 C 1.53005 * 109.47011 * 174.99688 * 23 22 21 25 25 C 1.52994 * 109.47284 * 294.99651 * 23 22 21 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 29 29 H 1.08007 * 120.07016 * 359.97438 * 4 3 2 30 30 H 0.96993 * 120.00339 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.00577 * 179.97438 * 17 5 4 32 32 H 1.08998 * 109.46966 * 299.99700 * 22 21 20 33 33 H 1.08996 * 109.47731 * 60.00209 * 22 21 20 34 34 H 1.09001 * 109.47610 * 55.00375 * 23 22 21 35 35 H 1.09010 * 109.46948 * 59.99859 * 24 23 22 36 36 H 1.08997 * 109.47319 * 179.97438 * 24 23 22 37 37 H 1.08999 * 109.47440 * 300.00583 * 24 23 22 38 38 H 1.08999 * 109.47398 * 300.00083 * 25 23 22 39 39 H 1.09002 * 109.47112 * 60.00359 * 25 23 22 40 40 H 1.09003 * 109.46981 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2940 2.3701 -0.0005 5 6 1.9315 3.6144 0.0000 6 6 1.1331 4.8536 -0.0011 7 8 -0.0809 4.7943 -0.0021 8 8 1.7492 6.0522 -0.0011 9 6 0.9604 7.1461 -0.0017 10 1 -0.1142 7.0371 -0.0025 11 6 1.5294 8.4120 -0.0022 12 7 2.8370 8.5448 -0.0017 13 14 0.4368 9.9272 -0.0022 14 1 -0.4201 9.9196 1.2105 15 1 1.2829 11.1476 -0.0035 16 1 -0.4209 9.9189 -1.2145 17 6 3.3281 3.6808 0.0005 18 6 4.0728 2.5207 0.0011 19 17 5.8067 2.6046 0.0011 20 6 3.4384 1.2844 0.0067 21 8 4.1763 0.1442 0.0133 22 6 4.5348 -0.4038 -1.2569 23 6 5.3575 -1.6769 -1.0490 24 6 5.6354 -2.3315 -2.4038 25 6 6.6832 -1.3227 -0.3723 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2154 2.3147 -0.0014 30 1 3.2346 9.4295 -0.0025 31 1 3.8232 4.6406 0.0006 32 1 3.6312 -0.6430 -1.8174 33 1 5.1254 0.3241 -1.8131 34 1 4.8013 -2.3701 -0.4180 35 1 6.1917 -1.6383 -3.0349 36 1 6.2218 -3.2382 -2.2558 37 1 4.6909 -2.5837 -2.8860 38 1 7.2395 -0.6297 -1.0034 39 1 6.4853 -0.8565 0.5928 40 1 7.2695 -2.2297 -0.2247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057651752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:18 Heat of formation + Delta-G solvation = -161.689189 kcal Electronic energy + Delta-G solvation = -25577.307645 eV Core-core repulsion = 21576.477287 eV Total energy + Delta-G solvation = -4000.830358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93735 -40.93362 -39.56119 -38.49782 -37.58300 -37.10386 -36.09094 -34.38147 -31.66192 -31.40246 -28.56412 -27.98863 -27.82679 -27.12828 -24.84326 -23.59135 -22.24332 -21.22757 -19.99850 -19.85717 -18.99018 -18.16110 -17.61598 -17.21237 -16.92075 -16.62399 -16.41199 -16.26767 -16.10402 -15.94963 -15.38073 -14.89830 -14.52029 -14.37934 -14.22836 -13.70865 -13.59784 -13.52652 -13.28095 -13.14384 -12.93931 -12.84917 -12.53990 -12.45628 -12.29028 -12.17565 -12.08212 -11.95926 -11.93669 -11.88622 -11.56220 -11.26978 -10.97017 -10.74796 -9.97950 -9.49243 -8.60484 -6.37325 -0.71824 -0.09096 0.77883 1.27892 1.33993 1.50373 1.53863 2.01487 2.14098 2.23193 2.50460 2.58468 2.97474 3.64581 3.80907 3.84583 3.90161 3.93305 4.00113 4.02794 4.25563 4.34084 4.39588 4.49444 4.56731 4.70461 4.71729 4.74953 4.80650 4.84488 5.01307 5.03834 5.06406 5.09380 5.15119 5.23361 5.42066 5.46747 5.74314 5.92010 6.36227 6.50213 6.83084 7.62502 8.59078 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.003245 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.027502 B = 8625.698083 C = 9932.379809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.304 6.304 3 C 0.120 3.880 4 C -0.136 4.136 5 C -0.064 4.064 6 C 0.432 3.568 7 O -0.572 6.572 8 O -0.224 6.224 9 C -0.419 4.419 10 H 0.088 0.912 11 C 0.000 4.000 12 N -0.891 5.891 13 Si 1.019 2.981 14 H -0.260 1.260 15 H -0.259 1.259 16 H -0.260 1.260 17 C -0.088 4.088 18 C -0.029 4.029 19 Cl -0.031 7.031 20 C 0.098 3.902 21 O -0.316 6.316 22 C 0.064 3.936 23 C -0.088 4.088 24 C -0.142 4.142 25 C -0.144 4.144 26 H 0.135 0.865 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.159 0.841 30 H 0.282 0.718 31 H 0.141 0.859 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 -20.129 -2.990 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.217 6.217 3 C 0.074 3.926 4 C -0.155 4.155 5 C -0.066 4.066 6 C 0.282 3.718 7 O -0.472 6.472 8 O -0.132 6.132 9 C -0.494 4.494 10 H 0.106 0.894 11 C -0.202 4.202 12 N -0.527 5.527 13 Si 0.838 3.162 14 H -0.185 1.185 15 H -0.183 1.183 16 H -0.184 1.184 17 C -0.108 4.108 18 C -0.057 4.057 19 Cl -0.002 7.002 20 C 0.052 3.948 21 O -0.233 6.233 22 C -0.010 4.010 23 C -0.106 4.106 24 C -0.199 4.199 25 C -0.201 4.201 26 H 0.153 0.847 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.176 0.824 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.657 -20.268 -2.847 20.990 hybrid contribution -0.628 1.287 -0.056 1.433 sum 4.030 -18.980 -2.903 19.619 Atomic orbital electron populations 1.23509 0.75947 1.06375 1.02404 1.86153 1.23531 1.23875 1.88183 1.18795 0.90620 0.85244 0.97990 1.21314 1.01802 0.89324 1.03079 1.18867 0.92558 0.90756 1.04411 1.21231 0.86585 0.85295 0.78721 1.90593 1.15972 1.88175 1.52432 1.83919 1.40306 1.13522 1.75429 1.21532 0.91048 0.82183 1.54646 0.89429 1.26605 0.98211 1.01043 0.94337 1.70049 1.11372 1.26209 1.45108 0.84661 0.77148 0.74497 0.79942 1.18456 1.18306 1.18409 1.21160 0.92253 0.98410 0.98965 1.20788 0.86586 0.92712 1.05577 1.98364 1.06631 1.98539 1.96684 1.17694 0.86792 0.85815 1.04529 1.86032 1.69778 1.36614 1.30890 1.23132 0.98767 0.95877 0.83236 1.21103 0.96191 0.94366 0.98971 1.21767 1.02355 1.01008 0.94756 1.21785 0.96143 1.01746 1.00430 0.84670 0.91801 0.92004 0.82400 0.90822 0.84097 0.92377 0.92772 0.90199 0.92280 0.90534 0.91983 0.92876 0.93374 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.30 -7.73 10.27 -79.53 -0.82 -8.54 16 3 C 0.12 3.64 6.69 22.52 0.15 3.79 16 4 C -0.14 -4.66 8.58 22.63 0.19 -4.47 16 5 C -0.06 -2.67 5.87 -20.10 -0.12 -2.78 16 6 C 0.43 22.51 7.83 70.24 0.55 23.06 16 7 O -0.57 -31.43 15.59 19.69 0.31 -31.13 16 8 O -0.22 -13.24 8.98 10.88 0.10 -13.14 16 9 C -0.42 -25.10 9.65 67.95 0.66 -24.44 16 10 H 0.09 5.27 6.86 -2.91 -0.02 5.25 16 11 C 0.00 0.00 5.50 84.89 0.47 0.46 16 12 N -0.89 -51.56 13.67 21.63 0.30 -51.27 16 13 Si 1.02 42.34 29.55 68.60 2.03 44.36 16 14 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 C -0.09 -3.41 9.38 22.56 0.21 -3.20 16 18 C -0.03 -0.96 6.32 22.35 0.14 -0.82 16 19 Cl -0.03 -0.91 28.48 -2.72 -0.08 -0.99 16 20 C 0.10 3.01 5.74 22.72 0.13 3.14 16 21 O -0.32 -8.67 8.81 -77.43 -0.68 -9.35 16 22 C 0.06 1.38 5.44 71.98 0.39 1.77 16 23 C -0.09 -1.48 3.16 -10.79 -0.03 -1.51 16 24 C -0.14 -1.76 9.19 71.98 0.66 -1.09 16 25 C -0.14 -2.44 9.09 71.98 0.65 -1.79 16 26 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 28 H 0.06 1.12 7.66 -2.38 -0.02 1.10 16 29 H 0.16 5.09 5.87 -2.91 -0.02 5.07 16 30 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.14 5.92 7.60 -2.91 -0.02 5.90 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.01 363.97 7.38 -62.63 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.06 Total: 13.98 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.17 Total: -6.56 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.30 Total: -51.27 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -1.09 Total: -62.16 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -70.01 7.38 -62.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057651752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.055 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds