Wall clock time and date at job start Tue Mar 31 2020 15:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.99745 * 2 1 4 4 C 1.38213 * 119.99544 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00240 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99998 * 359.95897 * 5 4 3 7 7 N 1.48021 * 120.00013 * 180.02562 * 6 5 4 8 8 O 1.21805 * 119.99613 * 312.37226 * 7 6 5 9 9 O 1.21796 * 120.00132 * 132.09436 * 7 6 5 10 10 C 1.38213 * 120.00348 * 180.19897 * 2 1 3 11 11 S 1.76202 * 119.99715 * 0.02896 * 10 2 1 12 12 O 1.42103 * 106.40408 * 30.22609 * 11 10 2 13 13 O 1.42100 * 106.40359 * 163.15122 * 11 10 2 14 14 N 1.65600 * 107.21491 * 276.68921 * 11 10 2 15 15 C 1.46501 * 120.00284 * 63.25413 * 14 11 10 16 16 C 1.46503 * 119.99847 * 243.24938 * 14 11 10 17 17 H 1.08999 * 109.47374 * 0.02562 * 16 14 11 18 18 C 1.52995 * 109.47468 * 239.99907 * 16 14 11 19 19 C 1.50703 * 109.46555 * 120.00274 * 16 14 11 20 20 H 1.07997 * 120.00529 * 26.80199 * 19 16 14 21 21 C 1.37882 * 119.99658 * 206.79444 * 19 16 14 22 22 N 1.31520 * 119.99630 * 180.90354 * 21 19 16 23 23 Si 1.86794 * 120.00133 * 0.90679 * 21 19 16 24 24 H 1.48501 * 109.47060 * 91.86545 * 23 21 19 25 25 H 1.48503 * 109.47206 * 211.86119 * 23 21 19 26 26 H 1.48497 * 109.47288 * 331.86149 * 23 21 19 27 27 H 1.09001 * 109.46554 * 88.79426 * 1 2 3 28 28 H 1.08998 * 109.46676 * 208.79434 * 1 2 3 29 29 H 1.08999 * 109.47194 * 328.79386 * 1 2 3 30 30 H 1.07994 * 120.00315 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.99735 * 179.97438 * 4 3 2 32 32 H 1.08006 * 119.99570 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47071 * 84.39686 * 15 14 11 34 34 H 1.08996 * 109.47290 * 204.39264 * 15 14 11 35 35 H 1.09003 * 109.47133 * 324.40071 * 15 14 11 36 36 H 1.09005 * 109.47345 * 184.54805 * 18 16 14 37 37 H 1.09001 * 109.47796 * 304.55315 * 18 16 14 38 38 H 1.09006 * 109.46692 * 64.55377 * 18 16 14 39 39 H 0.96998 * 119.99764 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 0.0009 7 7 4.3208 -2.4788 0.0014 8 8 5.2405 -2.6513 -0.7783 9 8 4.0134 -3.3591 0.7850 10 6 2.1982 -1.1969 -0.0042 11 16 1.3172 -2.7229 -0.0102 12 8 0.0968 -2.4789 -0.6961 13 8 2.2466 -3.7212 -0.4087 14 7 0.9119 -3.0610 1.5594 15 6 0.0137 -2.1660 2.2932 16 6 1.4515 -4.2554 2.2142 17 1 2.0946 -4.7927 1.5172 18 6 0.2993 -5.1631 2.6491 19 6 2.2527 -3.8465 3.4233 20 1 2.0239 -2.9240 3.9361 21 6 3.2780 -4.6503 3.8749 22 7 3.9657 -4.3023 4.9406 23 14 3.6902 -6.2333 2.9730 24 1 4.7360 -5.9644 1.9536 25 1 4.1919 -7.2395 3.9432 26 1 2.4705 -6.7547 2.3054 27 1 -0.3632 0.0216 -1.0275 28 1 -0.3632 -0.9006 0.4950 29 1 -0.3633 0.8790 0.5324 30 1 1.6583 2.1327 -0.0004 31 1 4.1205 2.1327 -0.0010 32 1 5.3518 0.0001 -0.0014 33 1 -1.0209 -2.4265 2.0699 34 1 0.1917 -2.2702 3.3635 35 1 0.2020 -1.1355 1.9920 36 1 0.6957 -6.0115 3.2071 37 1 -0.3874 -4.6009 3.2821 38 1 -0.2315 -5.5239 1.7680 39 1 4.6872 -4.8676 5.2580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:50 Heat of formation + Delta-G solvation = -36.849745 kcal Electronic energy + Delta-G solvation = -28484.479573 eV Core-core repulsion = 24523.399117 eV Total energy + Delta-G solvation = -3961.080456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22674 -40.73046 -38.66280 -38.10470 -37.48856 -37.12145 -34.62635 -34.29251 -33.21542 -31.68782 -28.65021 -27.73166 -27.22185 -26.95158 -24.39525 -23.06718 -22.43537 -20.43893 -19.85984 -19.65175 -19.33656 -18.70047 -18.44452 -18.37603 -17.28541 -16.72545 -16.47241 -16.07156 -15.39675 -15.26046 -15.11993 -14.72742 -14.42369 -14.33127 -14.18334 -13.89493 -13.69118 -13.49733 -13.31798 -13.20636 -13.14054 -13.02929 -12.95553 -12.65644 -12.54934 -12.29007 -12.25503 -11.93091 -11.83972 -11.77459 -11.64400 -11.19455 -10.89500 -10.62596 -10.38245 -9.74038 -8.22743 -6.21375 -1.27844 -0.85829 -0.48566 -0.06551 0.30492 1.36380 1.47723 1.55935 1.73829 2.02345 2.44180 2.46583 2.90426 3.20375 3.32448 3.53321 3.68438 3.78627 3.82378 3.96681 4.15155 4.35030 4.50983 4.55852 4.65990 4.66377 4.76445 4.81417 4.85016 4.88904 4.94785 5.04850 5.16771 5.22547 5.35104 5.43068 5.48404 5.65846 5.90739 6.38341 6.42447 6.80010 7.44974 8.92436 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.007244 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.912845 B = 3864.558940 C = 4604.284774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.022 3.978 3 C -0.086 4.086 4 C -0.038 4.038 5 C -0.097 4.097 6 C 0.034 3.966 7 N 0.000 5.000 8 O -0.180 6.180 9 O -0.115 6.115 10 C -0.663 4.663 11 S 2.670 3.330 12 O -0.960 6.960 13 O -0.991 6.991 14 N -0.969 5.969 15 C 0.076 3.924 16 C 0.233 3.767 17 H 0.052 0.948 18 C -0.147 4.147 19 C -0.492 4.492 20 H 0.058 0.942 21 C 0.045 3.955 22 N -0.938 5.938 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.240 1.240 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.206 0.794 31 H 0.207 0.793 32 H 0.162 0.838 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 16.911 -9.403 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 C -0.104 4.104 4 C -0.056 4.056 5 C -0.116 4.116 6 C -0.048 4.048 7 N 0.522 4.478 8 O -0.391 6.391 9 O -0.341 6.341 10 C -0.751 4.751 11 S 2.761 3.239 12 O -0.949 6.949 13 O -0.981 6.981 14 N -0.810 5.810 15 C -0.068 4.068 16 C 0.128 3.872 17 H 0.069 0.931 18 C -0.207 4.207 19 C -0.532 4.532 20 H 0.076 0.924 21 C -0.154 4.154 22 N -0.579 5.579 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.163 1.163 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.223 0.777 31 H 0.224 0.776 32 H 0.180 0.820 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.013 17.021 -10.098 21.352 hybrid contribution 1.646 -1.243 0.175 2.070 sum -6.367 15.778 -9.923 19.697 Atomic orbital electron populations 1.21823 0.86836 1.06531 1.06376 1.20213 0.98237 0.90260 0.89308 1.22226 0.94579 0.98980 0.94630 1.22114 0.94796 0.97737 0.90965 1.21518 1.02678 0.89797 0.97651 1.20788 0.91342 0.84274 1.08417 1.44152 1.00736 1.03267 0.99658 1.94393 1.22495 1.86691 1.35499 1.94779 1.69687 1.36549 1.33051 1.30610 1.02540 1.23653 1.18253 1.02525 0.73816 0.73290 0.74222 1.93563 1.43097 1.85901 1.72362 1.93621 1.64253 1.58078 1.82179 1.57197 1.59129 1.34163 1.30497 1.21956 0.93127 0.92177 0.99562 1.19064 0.92821 0.82399 0.92896 0.93067 1.22241 0.98623 0.99368 1.00452 1.21171 1.14432 1.07325 1.10279 0.92374 1.25293 0.95359 0.99918 0.94839 1.69969 1.22745 1.39762 1.25404 0.86613 0.80792 0.81718 0.79299 1.20306 1.21031 1.16341 0.87553 0.90539 0.85069 0.77711 0.77594 0.82017 0.90259 0.90143 0.90084 0.92844 0.91015 0.93653 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 7.57 71.24 0.54 -2.23 16 2 C 0.02 0.48 5.45 -19.86 -0.11 0.37 16 3 C -0.09 -1.11 9.71 22.27 0.22 -0.89 16 4 C -0.04 -0.52 10.05 22.27 0.22 -0.29 16 5 C -0.10 -2.39 9.79 22.27 0.22 -2.17 16 6 C 0.03 1.22 6.31 36.37 0.23 1.45 16 7 N 0.00 0.02 3.35 -46.47 -0.16 -0.14 16 8 O -0.18 -8.18 19.10 18.88 0.36 -7.82 16 9 O -0.12 -6.20 14.34 26.45 0.38 -5.82 16 10 C -0.66 -22.19 5.75 22.27 0.13 -22.06 16 11 S 2.67 106.93 4.75 -56.49 -0.27 106.67 16 12 O -0.96 -35.59 14.67 -128.00 -1.88 -37.46 16 13 O -0.99 -48.77 11.94 -118.29 -1.41 -50.18 16 14 N -0.97 -38.79 3.05 -520.44 -1.59 -40.38 16 15 C 0.08 2.31 8.29 127.77 1.06 3.37 16 16 C 0.23 11.05 1.70 44.24 0.08 11.12 16 17 H 0.05 2.71 3.67 -2.39 -0.01 2.71 16 18 C -0.15 -6.03 8.82 71.98 0.63 -5.39 16 19 C -0.49 -26.77 8.62 25.60 0.22 -26.55 16 20 H 0.06 3.32 6.96 -2.91 -0.02 3.30 16 21 C 0.05 2.63 5.47 84.66 0.46 3.09 16 22 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 23 Si 0.89 46.92 26.25 68.60 1.80 48.72 16 24 H -0.28 -15.45 7.11 99.48 0.71 -14.74 16 25 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.24 -11.73 5.91 99.48 0.59 -11.14 16 27 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 28 H 0.08 1.68 2.90 -2.39 -0.01 1.68 16 29 H 0.13 1.03 8.09 -2.39 -0.02 1.01 16 30 H 0.21 0.38 8.06 -2.91 -0.02 0.36 16 31 H 0.21 0.59 8.06 -2.91 -0.02 0.57 16 32 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.08 2.63 6.70 -2.39 -0.02 2.62 16 35 H 0.08 1.95 4.82 -2.39 -0.01 1.94 16 36 H 0.05 2.25 6.64 -2.38 -0.02 2.23 16 37 H 0.07 2.61 7.52 -2.39 -0.02 2.59 16 38 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -83.62 323.22 2.42 -81.20 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 0.99 Total: 2.93 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 3.90 Total: -40.18 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -1.45 Total: -98.05 kcal Atomic # 8 Polarization: -98.73 SS G_CDS: -2.55 Total: -101.28 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.80 Total: 48.72 kcal Atomic # 16 Polarization: 106.93 SS G_CDS: -0.27 Total: 106.67 kcal Total: -83.62 2.42 -81.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.348 kcal (2) G-P(sol) polarization free energy of solvation -83.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds