Wall clock time and date at job start Tue Mar 31 2020 15:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38255 * 120.00016 * 2 1 4 4 N 1.48017 * 120.00160 * 0.04216 * 3 2 1 5 5 O 1.21799 * 120.00323 * 175.96034 * 4 3 2 6 6 O 1.21799 * 119.99892 * 355.96647 * 4 3 2 7 7 C 1.38213 * 119.99940 * 180.20377 * 3 2 1 8 8 C 1.38258 * 120.00142 * 359.85567 * 7 3 2 9 9 C 1.38211 * 119.99507 * 359.96000 * 8 7 3 10 10 C 1.38210 * 119.99945 * 179.81003 * 2 1 3 11 11 S 1.76205 * 120.00063 * 359.97438 * 10 2 1 12 12 O 1.42099 * 106.40241 * 180.15376 * 11 10 2 13 13 O 1.42096 * 106.39849 * 47.23497 * 11 10 2 14 14 N 1.65598 * 107.21613 * 293.69569 * 11 10 2 15 15 C 1.46501 * 120.00426 * 277.98969 * 14 11 10 16 16 C 1.46500 * 119.99892 * 97.99637 * 14 11 10 17 17 H 1.08997 * 109.47228 * 354.55670 * 16 14 11 18 18 C 1.53006 * 109.47020 * 114.55891 * 16 14 11 19 19 C 1.50697 * 109.47037 * 234.55725 * 16 14 11 20 20 H 1.07999 * 120.00053 * 0.02562 * 19 16 14 21 21 C 1.37883 * 119.99934 * 180.02562 * 19 16 14 22 22 N 1.31515 * 119.99920 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99875 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47040 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47004 * 119.99985 * 23 21 19 26 26 H 1.48494 * 109.46912 * 239.99749 * 23 21 19 27 27 H 1.08999 * 109.47474 * 277.33433 * 1 2 3 28 28 H 1.09002 * 109.47460 * 37.33498 * 1 2 3 29 29 H 1.08999 * 109.47152 * 157.33785 * 1 2 3 30 30 H 1.07997 * 120.00345 * 179.83576 * 7 3 2 31 31 H 1.08003 * 120.00214 * 179.97438 * 8 7 3 32 32 H 1.08005 * 119.99492 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47345 * 270.01043 * 15 14 11 34 34 H 1.09004 * 109.46470 * 30.00208 * 15 14 11 35 35 H 1.08994 * 109.47184 * 150.00291 * 15 14 11 36 36 H 1.08995 * 109.46929 * 299.99779 * 18 16 14 37 37 H 1.09004 * 109.46782 * 179.97438 * 18 16 14 38 38 H 1.09000 * 109.47029 * 60.00280 * 18 16 14 39 39 H 0.97002 * 119.99763 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 7 1.4582 2.4792 0.0009 5 8 2.0649 3.5327 0.0752 6 8 0.2424 2.4806 -0.0725 7 6 3.5804 1.1973 -0.0043 8 6 4.2717 0.0000 -0.0055 9 6 3.5805 -1.1969 -0.0016 10 6 2.1980 -1.1969 0.0040 11 16 1.3170 -2.7229 0.0097 12 8 2.2969 -3.7520 0.0166 13 8 0.3144 -2.6111 -0.9911 14 7 0.5220 -2.8244 1.4588 15 6 1.2328 -3.2862 2.6537 16 6 -0.8924 -2.4525 1.5460 17 1 -1.2208 -2.0461 0.5894 18 6 -1.7250 -3.6900 1.8873 19 6 -1.0731 -1.4131 2.6220 20 1 -0.2197 -1.0641 3.1844 21 6 -2.3279 -0.9076 2.8885 22 7 -3.3672 -1.3330 2.2040 23 14 -2.5518 0.3813 4.2219 24 1 -1.2366 0.6884 4.8393 25 1 -3.1187 1.6174 3.6253 26 1 -3.4779 -0.1367 5.2606 27 1 -0.3634 0.1312 1.0192 28 1 -0.3634 0.8171 -0.6232 29 1 -0.3633 -0.9483 -0.3959 30 1 4.1204 2.1326 -0.0069 31 1 5.3517 0.0000 -0.0092 32 1 4.1206 -2.1323 -0.0030 33 1 1.1413 -4.3693 2.7350 34 1 2.2859 -3.0154 2.5772 35 1 0.8004 -2.8175 3.5376 36 1 -1.5943 -4.4418 1.1089 37 1 -2.7773 -3.4132 1.9525 38 1 -1.3966 -4.0964 2.8439 39 1 -4.2499 -0.9772 2.3913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:56 Heat of formation + Delta-G solvation = -31.253272 kcal Electronic energy + Delta-G solvation = -27763.950353 eV Core-core repulsion = 23803.112579 eV Total energy + Delta-G solvation = -3960.837774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11367 -39.54526 -37.21485 -36.51521 -36.39164 -35.58018 -33.03891 -32.77178 -32.15735 -29.30226 -27.74229 -25.92961 -25.65251 -25.32168 -23.24747 -22.16640 -20.98942 -19.43193 -18.48234 -18.16514 -17.43063 -17.27246 -16.73904 -16.52068 -16.10463 -16.00976 -15.19683 -14.67573 -13.93773 -13.85469 -13.63715 -13.33575 -12.96470 -12.76788 -12.69128 -12.43538 -12.22329 -12.04187 -11.89873 -11.69331 -11.49359 -11.32310 -11.19989 -11.08542 -10.96001 -10.94506 -10.85270 -10.58645 -10.33679 -10.21634 -9.99596 -9.98047 -9.37565 -9.20383 -8.58254 -8.17286 -6.22915 -4.31459 -0.16118 0.50473 0.74271 1.33240 1.50835 2.91322 3.19572 3.28736 3.30030 3.38851 3.96588 4.20825 4.26527 4.35178 4.56548 4.58022 4.78838 5.03372 5.08068 5.21499 5.39423 5.42931 5.60367 5.67250 6.01626 6.05272 6.14133 6.18975 6.29407 6.52380 6.53863 6.74162 6.75714 6.94361 7.01707 7.24969 7.47974 7.64057 7.82193 7.90209 8.10052 8.70215 9.34574 10.81509 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.007487 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.208447 B = 3738.731149 C = 5576.606125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.114 3.886 3 C -0.080 4.080 4 N 0.036 4.964 5 O -0.180 6.180 6 O -0.141 6.141 7 C -0.005 4.005 8 C -0.159 4.159 9 C 0.029 3.971 10 C -0.691 4.691 11 S 2.687 3.313 12 O -0.969 6.969 13 O -0.947 6.947 14 N -0.975 5.975 15 C 0.102 3.898 16 C 0.257 3.743 17 H 0.072 0.928 18 C -0.146 4.146 19 C -0.532 4.532 20 H 0.064 0.936 21 C 0.072 3.928 22 N -0.876 5.876 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.282 1.282 27 H 0.141 0.859 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.013 0.987 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.633 0.334 -2.377 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.112 3.888 3 C -0.165 4.165 4 N 0.553 4.447 5 O -0.391 6.391 6 O -0.358 6.358 7 C -0.024 4.024 8 C -0.178 4.178 9 C 0.009 3.991 10 C -0.774 4.774 11 S 2.774 3.226 12 O -0.959 6.959 13 O -0.937 6.937 14 N -0.816 5.816 15 C -0.044 4.044 16 C 0.155 3.845 17 H 0.089 0.911 18 C -0.206 4.206 19 C -0.571 4.571 20 H 0.082 0.918 21 C -0.132 4.132 22 N -0.513 5.513 23 Si 0.718 3.282 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.208 1.208 27 H 0.159 0.841 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.032 0.968 37 H 0.114 0.886 38 H 0.053 0.947 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.819 -0.791 -3.067 13.204 hybrid contribution 0.091 1.865 1.129 2.182 sum 12.910 1.073 -1.938 13.098 Atomic orbital electron populations 1.22773 0.86229 1.08622 1.08947 1.19735 0.98821 0.88820 0.81442 1.21050 0.92576 0.83878 1.18969 1.43463 1.01337 1.02364 0.97575 1.94488 1.70214 1.19886 1.54466 1.94535 0.95356 1.93701 1.52257 1.21254 0.91075 1.00885 0.89172 1.21220 1.01039 0.90836 1.04727 1.21424 0.92136 1.00095 0.85402 1.31556 1.06348 1.20775 1.18758 1.02313 0.72976 0.73209 0.74074 1.93518 1.62253 1.52976 1.87129 1.93537 1.57058 1.86176 1.56959 1.57431 1.21442 1.79139 1.23603 1.21309 0.94245 0.99218 0.89642 1.19123 0.72477 0.93512 0.99412 0.91056 1.22096 1.04246 0.96388 0.97884 1.21294 0.93779 1.22407 1.19648 0.91770 1.24875 0.95780 0.96481 0.96093 1.69861 0.99538 1.42144 1.39767 0.86564 0.78352 0.81635 0.81699 1.19916 1.20419 1.20820 0.84148 0.87015 0.86755 0.82744 0.83090 0.82490 0.93076 0.93346 0.89505 0.96776 0.88588 0.94699 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.07 7.20 36.00 0.26 -3.81 16 2 C 0.11 1.97 5.87 -104.63 -0.61 1.35 16 3 C -0.08 -1.28 6.84 -79.95 -0.55 -1.83 16 4 N 0.04 0.63 4.45 33.96 0.15 0.78 16 5 O -0.18 -3.06 18.46 -29.46 -0.54 -3.60 16 6 O -0.14 -2.67 15.27 -29.46 -0.45 -3.12 16 7 C 0.00 -0.06 9.56 -39.58 -0.38 -0.43 16 8 C -0.16 -1.63 10.05 -39.58 -0.40 -2.02 16 9 C 0.03 0.35 9.55 -39.59 -0.38 -0.03 16 10 C -0.69 -10.93 5.91 -39.59 -0.23 -11.17 16 11 S 2.69 48.09 5.02 -107.50 -0.54 47.55 16 12 O -0.97 -17.40 16.33 -57.17 -0.93 -18.33 16 13 O -0.95 -19.43 14.21 -57.17 -0.81 -20.24 16 14 N -0.97 -18.25 3.04 -115.85 -0.35 -18.60 16 15 C 0.10 1.62 9.50 59.85 0.57 2.19 16 16 C 0.26 5.64 1.66 -69.08 -0.11 5.52 16 17 H 0.07 1.69 4.85 -51.93 -0.25 1.44 16 18 C -0.15 -3.20 9.05 37.16 0.34 -2.87 16 19 C -0.53 -12.36 5.74 -34.44 -0.20 -12.56 16 20 H 0.06 1.47 6.95 -52.49 -0.37 1.11 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.88 -22.34 11.32 55.43 0.63 -21.71 16 23 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.14 2.96 5.71 -51.93 -0.30 2.66 16 28 H 0.11 2.09 5.55 -51.93 -0.29 1.80 16 29 H 0.11 2.33 2.80 -51.93 -0.15 2.18 16 30 H 0.15 1.48 7.62 -52.49 -0.40 1.08 16 31 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.16 1.58 7.33 -52.48 -0.38 1.20 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.64 7.99 -51.93 -0.41 0.22 16 35 H 0.09 1.42 6.61 -51.93 -0.34 1.07 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 2.30 6.07 -51.93 -0.32 1.99 16 38 H 0.03 0.71 7.81 -51.93 -0.41 0.31 16 39 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -28.35 327.13 -8.75 -37.10 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.01 Total: 4.60 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -1.79 Total: -23.98 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.43 Total: -39.53 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -2.74 Total: -45.29 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 48.09 SS G_CDS: -0.54 Total: 47.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.35 -8.75 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.848 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds