Wall clock time and date at job start Tue Mar 31 2020 15:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38255 * 120.00016 * 2 1 4 4 N 1.48017 * 120.00160 * 0.04216 * 3 2 1 5 5 O 1.21799 * 120.00323 * 175.96034 * 4 3 2 6 6 O 1.21799 * 119.99892 * 355.96647 * 4 3 2 7 7 C 1.38213 * 119.99940 * 180.20377 * 3 2 1 8 8 C 1.38258 * 120.00142 * 359.85567 * 7 3 2 9 9 C 1.38211 * 119.99507 * 359.96000 * 8 7 3 10 10 C 1.38210 * 119.99945 * 179.81003 * 2 1 3 11 11 S 1.76205 * 120.00063 * 359.97438 * 10 2 1 12 12 O 1.42099 * 106.40241 * 180.15376 * 11 10 2 13 13 O 1.42096 * 106.39849 * 47.23497 * 11 10 2 14 14 N 1.65598 * 107.21613 * 293.69569 * 11 10 2 15 15 C 1.46501 * 120.00426 * 277.98969 * 14 11 10 16 16 C 1.46500 * 119.99892 * 97.99637 * 14 11 10 17 17 H 1.08997 * 109.47228 * 354.55670 * 16 14 11 18 18 C 1.53006 * 109.47020 * 114.55891 * 16 14 11 19 19 C 1.50697 * 109.47037 * 234.55725 * 16 14 11 20 20 H 1.07999 * 120.00053 * 0.02562 * 19 16 14 21 21 C 1.37883 * 119.99934 * 180.02562 * 19 16 14 22 22 N 1.31515 * 119.99920 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99875 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47040 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47004 * 119.99985 * 23 21 19 26 26 H 1.48494 * 109.46912 * 239.99749 * 23 21 19 27 27 H 1.08999 * 109.47474 * 277.33433 * 1 2 3 28 28 H 1.09002 * 109.47460 * 37.33498 * 1 2 3 29 29 H 1.08999 * 109.47152 * 157.33785 * 1 2 3 30 30 H 1.07997 * 120.00345 * 179.83576 * 7 3 2 31 31 H 1.08003 * 120.00214 * 179.97438 * 8 7 3 32 32 H 1.08005 * 119.99492 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47345 * 270.01043 * 15 14 11 34 34 H 1.09004 * 109.46470 * 30.00208 * 15 14 11 35 35 H 1.08994 * 109.47184 * 150.00291 * 15 14 11 36 36 H 1.08995 * 109.46929 * 299.99779 * 18 16 14 37 37 H 1.09004 * 109.46782 * 179.97438 * 18 16 14 38 38 H 1.09000 * 109.47029 * 60.00280 * 18 16 14 39 39 H 0.97002 * 119.99763 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 7 1.4582 2.4792 0.0009 5 8 2.0649 3.5327 0.0752 6 8 0.2424 2.4806 -0.0725 7 6 3.5804 1.1973 -0.0043 8 6 4.2717 0.0000 -0.0055 9 6 3.5805 -1.1969 -0.0016 10 6 2.1980 -1.1969 0.0040 11 16 1.3170 -2.7229 0.0097 12 8 2.2969 -3.7520 0.0166 13 8 0.3144 -2.6111 -0.9911 14 7 0.5220 -2.8244 1.4588 15 6 1.2328 -3.2862 2.6537 16 6 -0.8924 -2.4525 1.5460 17 1 -1.2208 -2.0461 0.5894 18 6 -1.7250 -3.6900 1.8873 19 6 -1.0731 -1.4131 2.6220 20 1 -0.2197 -1.0641 3.1844 21 6 -2.3279 -0.9076 2.8885 22 7 -3.3672 -1.3330 2.2040 23 14 -2.5518 0.3813 4.2219 24 1 -1.2366 0.6884 4.8393 25 1 -3.1187 1.6174 3.6253 26 1 -3.4779 -0.1367 5.2606 27 1 -0.3634 0.1312 1.0192 28 1 -0.3634 0.8171 -0.6232 29 1 -0.3633 -0.9483 -0.3959 30 1 4.1204 2.1326 -0.0069 31 1 5.3517 0.0000 -0.0092 32 1 4.1206 -2.1323 -0.0030 33 1 1.1413 -4.3693 2.7350 34 1 2.2859 -3.0154 2.5772 35 1 0.8004 -2.8175 3.5376 36 1 -1.5943 -4.4418 1.1089 37 1 -2.7773 -3.4132 1.9525 38 1 -1.3966 -4.0964 2.8439 39 1 -4.2499 -0.9772 2.3913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:55 Heat of formation + Delta-G solvation = -48.758368 kcal Electronic energy + Delta-G solvation = -27764.709431 eV Core-core repulsion = 23803.112579 eV Total energy + Delta-G solvation = -3961.596852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.40875 -40.67628 -38.68558 -37.98725 -37.82194 -37.05172 -34.54316 -34.20331 -33.29111 -30.98873 -29.03721 -27.34414 -27.08182 -26.96464 -24.45307 -23.34540 -22.67173 -20.70239 -19.74046 -19.58518 -18.77594 -18.73510 -18.31630 -17.90698 -17.42092 -17.13432 -16.73762 -16.21316 -15.33043 -15.18786 -14.90355 -14.69551 -14.57091 -14.21672 -13.84757 -13.74478 -13.59765 -13.46689 -13.33554 -13.23732 -12.99347 -12.94639 -12.73890 -12.69413 -12.57744 -12.33074 -12.24242 -12.16929 -12.08071 -11.88415 -11.45772 -11.16336 -11.00872 -10.49591 -10.34809 -9.71413 -8.11142 -6.22039 -1.33936 -0.76597 -0.52834 0.14653 0.28491 1.40027 1.46229 1.51001 1.78142 2.06557 2.42533 2.59516 3.10492 3.18412 3.19511 3.38759 3.56180 3.73732 3.92023 4.06560 4.20185 4.28947 4.61879 4.67784 4.70516 4.73269 4.79758 4.86241 4.99305 5.02504 5.05693 5.16709 5.23276 5.28182 5.51241 5.62246 5.67691 5.85355 6.08949 6.28270 6.45266 6.84696 7.45306 8.93409 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.007487 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.208447 B = 3738.731149 C = 5576.606125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.092 3.908 3 C -0.097 4.097 4 N 0.036 4.964 5 O -0.146 6.146 6 O -0.208 6.208 7 C 0.005 3.995 8 C -0.127 4.127 9 C 0.034 3.966 10 C -0.699 4.699 11 S 2.697 3.303 12 O -0.968 6.968 13 O -0.983 6.983 14 N -0.984 5.984 15 C 0.092 3.908 16 C 0.262 3.738 17 H 0.048 0.952 18 C -0.142 4.142 19 C -0.520 4.520 20 H 0.066 0.934 21 C 0.031 3.969 22 N -0.906 5.906 23 Si 0.937 3.063 24 H -0.269 1.269 25 H -0.289 1.289 26 H -0.280 1.280 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.189 0.811 31 H 0.210 0.790 32 H 0.187 0.813 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.283 0.633 -1.860 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.089 3.911 3 C -0.181 4.181 4 N 0.549 4.451 5 O -0.368 6.368 6 O -0.410 6.410 7 C -0.014 4.014 8 C -0.146 4.146 9 C 0.015 3.985 10 C -0.786 4.786 11 S 2.788 3.212 12 O -0.958 6.958 13 O -0.974 6.974 14 N -0.824 5.824 15 C -0.053 4.053 16 C 0.159 3.841 17 H 0.065 0.935 18 C -0.202 4.202 19 C -0.560 4.560 20 H 0.084 0.916 21 C -0.171 4.171 22 N -0.545 5.545 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.206 1.206 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.206 0.794 31 H 0.227 0.773 32 H 0.204 0.796 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.333 -0.593 -2.538 17.528 hybrid contribution -1.040 1.828 0.915 2.294 sum 16.293 1.235 -1.623 16.420 Atomic orbital electron populations 1.22480 0.88876 1.07349 1.07232 1.19511 0.97403 0.90323 0.83843 1.21283 0.93979 0.82240 1.20609 1.43767 1.01256 1.03072 0.97032 1.94428 1.69827 1.20613 1.51934 1.94566 0.96348 1.94082 1.55986 1.21829 0.89053 1.03396 0.87085 1.21882 1.03499 0.88646 1.00571 1.21933 0.90388 1.02616 0.83560 1.31107 1.08007 1.18486 1.20992 1.01703 0.72631 0.73715 0.73164 1.93509 1.61746 1.53588 1.86983 1.93497 1.58704 1.86942 1.58233 1.57305 1.20513 1.79691 1.24883 1.21541 0.95619 0.99864 0.88229 1.18766 0.74492 0.93050 0.97801 0.93468 1.21997 1.02910 0.96675 0.98640 1.21455 0.93434 1.21913 1.19173 0.91567 1.25436 0.95966 0.97988 0.97669 1.69968 0.99732 1.43507 1.41250 0.85822 0.78236 0.79555 0.79934 1.19357 1.21548 1.20577 0.86740 0.87755 0.88354 0.79390 0.77286 0.79578 0.92003 0.90233 0.90262 0.96033 0.90973 0.93714 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -8.39 7.20 71.23 0.51 -7.88 16 2 C 0.09 3.13 5.87 -19.87 -0.12 3.01 16 3 C -0.10 -2.89 6.84 36.37 0.25 -2.65 16 4 N 0.04 1.23 4.45 -46.47 -0.21 1.02 16 5 O -0.15 -4.63 18.46 18.89 0.35 -4.28 16 6 O -0.21 -8.34 15.27 18.89 0.29 -8.05 16 7 C 0.01 0.10 9.56 22.27 0.21 0.31 16 8 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 9 C 0.03 0.67 9.55 22.27 0.21 0.88 16 10 C -0.70 -20.75 5.91 22.27 0.13 -20.62 16 11 S 2.70 95.00 5.02 -56.49 -0.28 94.72 16 12 O -0.97 -32.63 16.33 -128.00 -2.09 -34.72 16 13 O -0.98 -41.78 14.21 -128.00 -1.82 -43.59 16 14 N -0.98 -36.72 3.04 -520.45 -1.58 -38.30 16 15 C 0.09 2.79 9.50 127.77 1.21 4.00 16 16 C 0.26 11.91 1.66 44.25 0.07 11.99 16 17 H 0.05 2.40 4.85 -2.39 -0.01 2.39 16 18 C -0.14 -6.42 9.05 71.98 0.65 -5.77 16 19 C -0.52 -24.85 5.74 25.60 0.15 -24.70 16 20 H 0.07 3.07 6.95 -2.91 -0.02 3.05 16 21 C 0.03 1.55 5.30 84.66 0.45 2.00 16 22 N -0.91 -48.45 11.32 21.45 0.24 -48.20 16 23 Si 0.94 41.42 29.54 68.60 2.03 43.45 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 H 0.11 5.19 5.71 -2.39 -0.01 5.18 16 28 H 0.10 4.30 5.55 -2.39 -0.01 4.29 16 29 H 0.10 4.32 2.80 -2.39 -0.01 4.31 16 30 H 0.19 2.36 7.62 -2.91 -0.02 2.34 16 31 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.19 2.61 7.33 -2.91 -0.02 2.59 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.86 7.99 -2.39 -0.02 1.84 16 35 H 0.08 2.50 6.61 -2.39 -0.02 2.48 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 38 H 0.04 1.86 7.81 -2.39 -0.02 1.84 16 39 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -65.75 327.13 2.00 -63.75 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.11 Total: 15.14 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 3.96 Total: -40.94 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.55 Total: -85.48 kcal Atomic # 8 Polarization: -87.37 SS G_CDS: -3.27 Total: -90.64 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 95.00 SS G_CDS: -0.28 Total: 94.72 kcal Total: -65.75 2.00 -63.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.995 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds