Wall clock time and date at job start Tue Mar 31 2020 15:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00005 * 2 1 4 4 N 1.48020 * 120.00125 * 359.97306 * 3 2 1 5 5 O 1.21796 * 120.00186 * 186.46596 * 4 3 2 6 6 O 1.21801 * 119.99729 * 6.47484 * 4 3 2 7 7 C 1.38219 * 119.99838 * 179.97438 * 3 2 1 8 8 C 1.38249 * 119.99861 * 359.97438 * 7 3 2 9 9 C 1.38210 * 120.00352 * 359.74218 * 8 7 3 10 10 C 1.38214 * 119.99875 * 179.97438 * 2 1 3 11 11 S 1.76203 * 120.00172 * 0.02562 * 10 2 1 12 12 O 1.42098 * 106.40238 * 81.30690 * 11 10 2 13 13 O 1.42103 * 106.39881 * 308.38668 * 11 10 2 14 14 N 1.65601 * 107.21664 * 194.85357 * 11 10 2 15 15 C 1.46503 * 119.99555 * 274.90526 * 14 11 10 16 16 C 1.46497 * 120.00279 * 94.90556 * 14 11 10 17 17 H 1.08993 * 109.47284 * 4.88699 * 16 14 11 18 18 C 1.52997 * 109.46857 * 244.88511 * 16 14 11 19 19 C 1.50702 * 109.46895 * 124.88786 * 16 14 11 20 20 H 1.07997 * 119.99900 * 359.97438 * 19 16 14 21 21 C 1.37872 * 119.99894 * 180.02562 * 19 16 14 22 22 N 1.31515 * 120.00166 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00165 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.46889 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47468 * 119.99720 * 23 21 19 26 26 H 1.48506 * 109.47277 * 240.00270 * 23 21 19 27 27 H 1.09000 * 109.47627 * 276.82688 * 1 2 3 28 28 H 1.09003 * 109.47042 * 36.82301 * 1 2 3 29 29 H 1.09001 * 109.47281 * 156.82305 * 1 2 3 30 30 H 1.07998 * 119.99644 * 179.97438 * 7 3 2 31 31 H 1.08001 * 119.99657 * 179.97438 * 8 7 3 32 32 H 1.08001 * 120.00072 * 180.27288 * 9 8 7 33 33 H 1.09002 * 109.47178 * 270.00513 * 15 14 11 34 34 H 1.09001 * 109.47041 * 29.99797 * 15 14 11 35 35 H 1.08994 * 109.47174 * 150.00558 * 15 14 11 36 36 H 1.08997 * 109.47289 * 54.77433 * 18 16 14 37 37 H 1.08996 * 109.47538 * 294.77096 * 18 16 14 38 38 H 1.09007 * 109.46736 * 174.77157 * 18 16 14 39 39 H 0.96995 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 7 1.4582 2.4792 -0.0006 5 8 2.0614 3.5306 -0.1194 6 8 0.2460 2.4826 0.1179 7 6 3.5805 1.1973 0.0005 8 6 4.2717 0.0000 0.0016 9 6 3.5806 -1.1970 0.0075 10 6 2.1981 -1.1970 0.0005 11 16 1.3171 -2.7230 0.0005 12 8 0.9385 -2.9677 -1.3470 13 8 0.3829 -2.6469 1.0687 14 7 2.3959 -3.9118 0.4067 15 6 3.2329 -4.5257 -0.6272 16 6 2.5134 -4.3497 1.7998 17 1 1.7581 -3.8468 2.4036 18 6 3.9056 -3.9992 2.3288 19 6 2.3073 -5.8405 1.8768 20 1 2.1084 -6.4053 0.9780 21 6 2.3718 -6.4833 3.0948 22 7 2.6127 -5.7954 4.1895 23 14 2.1157 -8.3312 3.1904 24 1 1.8608 -8.8667 1.8290 25 1 3.3312 -8.9709 3.7548 26 1 0.9508 -8.6250 4.0634 27 1 -0.3634 0.1222 1.0203 28 1 -0.3633 0.8227 -0.6159 29 1 -0.3634 -0.9447 -0.4045 30 1 4.1204 2.1326 0.0001 31 1 5.3517 0.0000 0.0016 32 1 4.1206 -2.1323 0.0128 33 1 2.7173 -5.3897 -1.0464 34 1 3.4260 -3.7996 -1.4168 35 1 4.1780 -4.8446 -0.1876 36 1 4.0906 -2.9344 2.1875 37 1 4.6559 -4.5735 1.7855 38 1 3.9621 -4.2401 3.3904 39 1 2.6584 -6.2477 5.0463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:00 Heat of formation + Delta-G solvation = -37.821966 kcal Electronic energy + Delta-G solvation = -26918.148546 eV Core-core repulsion = 22957.025932 eV Total energy + Delta-G solvation = -3961.122614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42590 -39.77254 -36.91479 -36.84256 -36.51602 -35.62546 -33.46728 -32.76985 -32.32323 -29.34987 -28.16988 -26.23799 -25.75823 -25.34100 -23.50550 -22.48518 -20.93397 -19.69934 -18.80503 -18.22020 -17.77411 -17.21099 -16.98484 -16.51988 -16.27674 -15.74971 -15.57817 -14.74264 -14.18816 -14.16322 -13.69549 -13.47818 -13.28759 -12.95596 -12.84401 -12.64249 -12.51049 -12.13470 -11.98524 -11.76813 -11.57424 -11.55804 -11.43574 -11.29060 -11.13802 -11.02276 -10.96382 -10.74896 -10.59365 -10.42798 -10.15836 -10.09995 -9.56767 -9.39044 -8.60239 -8.25188 -6.20401 -4.27537 -0.37565 0.32465 0.60161 1.09145 1.21510 2.77188 3.19947 3.20554 3.29469 3.33195 3.82615 3.96571 4.16362 4.29309 4.32432 4.51078 4.66399 4.91605 4.95054 5.00955 5.12043 5.28444 5.35916 5.39242 5.52327 5.58420 5.82711 5.86425 5.90257 6.13691 6.33143 6.40332 6.51577 6.60342 6.79958 7.17580 7.45858 7.50756 7.62006 7.86709 8.09682 8.75195 9.39191 10.85941 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.003800 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.533831 B = 7365.999613 C = 7545.810012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.085 3.915 3 C -0.071 4.071 4 N 0.035 4.965 5 O -0.168 6.168 6 O -0.154 6.154 7 C -0.010 4.010 8 C -0.142 4.142 9 C 0.027 3.973 10 C -0.676 4.676 11 S 2.682 3.318 12 O -0.961 6.961 13 O -0.938 6.938 14 N -0.978 5.978 15 C 0.100 3.900 16 C 0.261 3.739 17 H 0.068 0.932 18 C -0.151 4.151 19 C -0.522 4.522 20 H 0.066 0.934 21 C 0.065 3.935 22 N -0.888 5.888 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.008 0.992 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 10.320 -8.200 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.082 3.918 3 C -0.155 4.155 4 N 0.552 4.448 5 O -0.381 6.381 6 O -0.369 6.369 7 C -0.029 4.029 8 C -0.161 4.161 9 C 0.009 3.991 10 C -0.757 4.757 11 S 2.768 3.232 12 O -0.951 6.951 13 O -0.928 6.928 14 N -0.820 5.820 15 C -0.046 4.046 16 C 0.159 3.841 17 H 0.085 0.915 18 C -0.210 4.210 19 C -0.562 4.562 20 H 0.085 0.915 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.208 1.208 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.550 9.661 -8.200 13.464 hybrid contribution 0.536 -0.173 0.294 0.635 sum 5.085 9.488 -7.906 13.356 Atomic orbital electron populations 1.21722 0.87891 1.05015 1.06684 1.19347 0.97642 0.89297 0.85508 1.20972 0.92769 0.83322 1.18439 1.43457 1.01172 1.02503 0.97627 1.94521 1.70135 1.19857 1.53586 1.94494 0.96041 1.93688 1.52707 1.21257 0.90850 1.01083 0.89716 1.21331 1.01433 0.90728 1.02641 1.21521 0.92012 1.00414 0.85192 1.31796 1.07052 1.20800 1.16079 1.02700 0.74079 0.72592 0.73868 1.93579 1.80743 1.84235 1.36528 1.93624 1.57641 1.86180 1.55386 1.57463 1.57629 1.48917 1.17975 1.21341 0.96288 0.98045 0.88931 1.18960 0.95163 0.96386 0.73593 0.91451 1.22198 0.98340 0.95574 1.04929 1.21286 1.49613 0.91414 0.93914 0.91542 1.24909 0.94685 0.98715 0.95454 1.69869 1.48612 1.35682 0.98467 0.86412 0.77857 0.84685 0.78304 1.19637 1.20942 1.20814 0.86572 0.86846 0.91174 0.82389 0.82654 0.82434 0.92212 0.93154 0.90220 0.97279 0.94280 0.88756 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 7.71 36.01 0.28 -1.98 16 2 C 0.08 1.26 5.88 -104.62 -0.61 0.64 16 3 C -0.07 -0.96 6.83 -79.95 -0.55 -1.50 16 4 N 0.04 0.51 4.45 33.96 0.15 0.66 16 5 O -0.17 -2.37 18.47 -29.46 -0.54 -2.91 16 6 O -0.15 -2.27 15.36 -29.46 -0.45 -2.72 16 7 C -0.01 -0.11 9.56 -39.58 -0.38 -0.48 16 8 C -0.14 -1.36 10.05 -39.59 -0.40 -1.76 16 9 C 0.03 0.33 9.30 -39.58 -0.37 -0.04 16 10 C -0.68 -10.16 5.83 -39.58 -0.23 -10.39 16 11 S 2.68 48.77 4.20 -107.50 -0.45 48.32 16 12 O -0.96 -18.48 17.10 -57.17 -0.98 -19.46 16 13 O -0.94 -19.84 15.01 -57.17 -0.86 -20.70 16 14 N -0.98 -18.02 2.28 -115.86 -0.26 -18.29 16 15 C 0.10 1.50 8.43 59.85 0.50 2.01 16 16 C 0.26 5.82 2.67 -69.08 -0.18 5.63 16 17 H 0.07 1.69 6.73 -51.93 -0.35 1.34 16 18 C -0.15 -3.04 8.86 37.16 0.33 -2.71 16 19 C -0.52 -12.98 8.31 -34.44 -0.29 -13.27 16 20 H 0.07 1.63 7.37 -52.49 -0.39 1.25 16 21 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -23.41 11.38 55.43 0.63 -22.77 16 23 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.11 1.45 5.86 -51.93 -0.30 1.15 16 29 H 0.07 1.04 5.98 -51.93 -0.31 0.72 16 30 H 0.16 1.25 7.62 -52.49 -0.40 0.85 16 31 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.16 1.65 6.08 -52.49 -0.32 1.33 16 33 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 34 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 35 H 0.08 1.11 6.80 -51.93 -0.35 0.76 16 36 H 0.01 0.14 7.59 -51.93 -0.39 -0.25 16 37 H 0.04 0.73 7.05 -51.93 -0.37 0.36 16 38 H 0.09 2.17 6.23 -51.92 -0.32 1.85 16 39 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 335.44 15.07 5.05 5.05 Total: -1.00 -30.40 335.44 -9.03 -39.43 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.31 Total: 0.70 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.99 Total: -22.28 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.52 Total: -40.40 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -2.83 Total: -45.79 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 48.77 SS G_CDS: -0.45 Total: 48.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.40 -9.03 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.608 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds