Wall clock time and date at job start Tue Mar 31 2020 15:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00005 * 2 1 4 4 N 1.48020 * 120.00125 * 359.97306 * 3 2 1 5 5 O 1.21796 * 120.00186 * 186.46596 * 4 3 2 6 6 O 1.21801 * 119.99729 * 6.47484 * 4 3 2 7 7 C 1.38219 * 119.99838 * 179.97438 * 3 2 1 8 8 C 1.38249 * 119.99861 * 359.97438 * 7 3 2 9 9 C 1.38210 * 120.00352 * 359.74218 * 8 7 3 10 10 C 1.38214 * 119.99875 * 179.97438 * 2 1 3 11 11 S 1.76203 * 120.00172 * 0.02562 * 10 2 1 12 12 O 1.42098 * 106.40238 * 81.30690 * 11 10 2 13 13 O 1.42103 * 106.39881 * 308.38668 * 11 10 2 14 14 N 1.65601 * 107.21664 * 194.85357 * 11 10 2 15 15 C 1.46503 * 119.99555 * 274.90526 * 14 11 10 16 16 C 1.46497 * 120.00279 * 94.90556 * 14 11 10 17 17 H 1.08993 * 109.47284 * 4.88699 * 16 14 11 18 18 C 1.52997 * 109.46857 * 244.88511 * 16 14 11 19 19 C 1.50702 * 109.46895 * 124.88786 * 16 14 11 20 20 H 1.07997 * 119.99900 * 359.97438 * 19 16 14 21 21 C 1.37872 * 119.99894 * 180.02562 * 19 16 14 22 22 N 1.31515 * 120.00166 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00165 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.46889 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47468 * 119.99720 * 23 21 19 26 26 H 1.48506 * 109.47277 * 240.00270 * 23 21 19 27 27 H 1.09000 * 109.47627 * 276.82688 * 1 2 3 28 28 H 1.09003 * 109.47042 * 36.82301 * 1 2 3 29 29 H 1.09001 * 109.47281 * 156.82305 * 1 2 3 30 30 H 1.07998 * 119.99644 * 179.97438 * 7 3 2 31 31 H 1.08001 * 119.99657 * 179.97438 * 8 7 3 32 32 H 1.08001 * 120.00072 * 180.27288 * 9 8 7 33 33 H 1.09002 * 109.47178 * 270.00513 * 15 14 11 34 34 H 1.09001 * 109.47041 * 29.99797 * 15 14 11 35 35 H 1.08994 * 109.47174 * 150.00558 * 15 14 11 36 36 H 1.08997 * 109.47289 * 54.77433 * 18 16 14 37 37 H 1.08996 * 109.47538 * 294.77096 * 18 16 14 38 38 H 1.09007 * 109.46736 * 174.77157 * 18 16 14 39 39 H 0.96995 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 7 1.4582 2.4792 -0.0006 5 8 2.0614 3.5306 -0.1194 6 8 0.2460 2.4826 0.1179 7 6 3.5805 1.1973 0.0005 8 6 4.2717 0.0000 0.0016 9 6 3.5806 -1.1970 0.0075 10 6 2.1981 -1.1970 0.0005 11 16 1.3171 -2.7230 0.0005 12 8 0.9385 -2.9677 -1.3470 13 8 0.3829 -2.6469 1.0687 14 7 2.3959 -3.9118 0.4067 15 6 3.2329 -4.5257 -0.6272 16 6 2.5134 -4.3497 1.7998 17 1 1.7581 -3.8468 2.4036 18 6 3.9056 -3.9992 2.3288 19 6 2.3073 -5.8405 1.8768 20 1 2.1084 -6.4053 0.9780 21 6 2.3718 -6.4833 3.0948 22 7 2.6127 -5.7954 4.1895 23 14 2.1157 -8.3312 3.1904 24 1 1.8608 -8.8667 1.8290 25 1 3.3312 -8.9709 3.7548 26 1 0.9508 -8.6250 4.0634 27 1 -0.3634 0.1222 1.0203 28 1 -0.3633 0.8227 -0.6159 29 1 -0.3634 -0.9447 -0.4045 30 1 4.1204 2.1326 0.0001 31 1 5.3517 0.0000 0.0016 32 1 4.1206 -2.1323 0.0128 33 1 2.7173 -5.3897 -1.0464 34 1 3.4260 -3.7996 -1.4168 35 1 4.1780 -4.8446 -0.1876 36 1 4.0906 -2.9344 2.1875 37 1 4.6559 -4.5735 1.7855 38 1 3.9621 -4.2401 3.3904 39 1 2.6584 -6.2477 5.0463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:59 Heat of formation + Delta-G solvation = -56.659994 kcal Electronic energy + Delta-G solvation = -26918.965424 eV Core-core repulsion = 22957.025932 eV Total energy + Delta-G solvation = -3961.939492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.48810 -40.75580 -38.42584 -38.08926 -37.90231 -37.12221 -34.70134 -34.31433 -33.35745 -30.98784 -29.21395 -27.33719 -27.16618 -27.05478 -24.57202 -23.53069 -22.53672 -20.80515 -19.86487 -19.63530 -18.84844 -18.66477 -18.36797 -17.98424 -17.29083 -17.17041 -16.87012 -16.42288 -15.38599 -15.20187 -15.02583 -14.88505 -14.63141 -14.24690 -13.86208 -13.81479 -13.67731 -13.53571 -13.38496 -13.29982 -13.16412 -12.99966 -12.78485 -12.67657 -12.64317 -12.38342 -12.28377 -12.17792 -12.11254 -11.95897 -11.77546 -11.15096 -11.08931 -10.52092 -10.49990 -9.78639 -8.12608 -6.25169 -1.38531 -0.81587 -0.66267 0.08155 0.18336 1.42826 1.47300 1.56260 1.79616 1.88637 2.43941 2.50945 2.98221 3.17841 3.19419 3.33301 3.46634 3.65912 3.72666 3.99030 4.04654 4.09692 4.24700 4.48590 4.56251 4.65230 4.69144 4.72688 4.83102 4.95227 5.00859 5.06020 5.10696 5.21181 5.31766 5.62556 5.66267 5.85947 6.10491 6.28190 6.40944 6.83086 7.44302 8.92405 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.003800 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.533831 B = 7365.999613 C = 7545.810012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.065 3.935 3 C -0.083 4.083 4 N 0.035 4.965 5 O -0.151 6.151 6 O -0.187 6.187 7 C 0.002 3.998 8 C -0.119 4.119 9 C 0.024 3.976 10 C -0.688 4.688 11 S 2.691 3.309 12 O -0.981 6.981 13 O -0.983 6.983 14 N -0.981 5.981 15 C 0.089 3.911 16 C 0.265 3.735 17 H 0.029 0.971 18 C -0.139 4.139 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.021 3.979 22 N -0.913 5.913 23 Si 0.953 3.047 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.288 1.288 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.193 0.807 31 H 0.208 0.792 32 H 0.177 0.823 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.202 11.264 -9.268 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 C -0.168 4.168 4 N 0.550 4.450 5 O -0.370 6.370 6 O -0.394 6.394 7 C -0.016 4.016 8 C -0.138 4.138 9 C 0.005 3.995 10 C -0.774 4.774 11 S 2.782 3.218 12 O -0.971 6.971 13 O -0.973 6.973 14 N -0.823 5.823 15 C -0.056 4.056 16 C 0.162 3.838 17 H 0.047 0.953 18 C -0.199 4.199 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.180 4.180 22 N -0.552 5.552 23 Si 0.779 3.221 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.215 1.215 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.210 0.790 31 H 0.225 0.775 32 H 0.194 0.806 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.641 10.524 -9.284 15.979 hybrid contribution -0.372 -0.336 0.561 0.752 sum 7.269 10.188 -8.723 15.255 Atomic orbital electron populations 1.21744 0.88802 1.04632 1.06638 1.19352 0.97512 0.90125 0.86814 1.21150 0.93913 0.82215 1.19484 1.43615 1.01172 1.02859 0.97391 1.94489 1.69936 1.20195 1.52397 1.94506 0.96543 1.93891 1.54460 1.21818 0.89393 1.03158 0.87271 1.21901 1.03638 0.88808 0.99456 1.21908 0.90606 1.02625 0.84368 1.31103 1.08441 1.18479 1.19412 1.01917 0.73821 0.73316 0.72760 1.93542 1.81380 1.85140 1.37014 1.93566 1.59966 1.87097 1.56652 1.57234 1.58083 1.49853 1.17119 1.21633 0.96100 0.98767 0.89053 1.18617 0.95393 0.94599 0.75222 0.95315 1.21987 0.97076 0.97939 1.02865 1.21626 1.49007 0.93085 0.93749 0.91923 1.25585 0.94802 1.02205 0.95375 1.69988 1.49597 1.36913 0.98748 0.85579 0.77626 0.80694 0.78155 1.19212 1.20091 1.21469 0.87024 0.85828 0.92521 0.79017 0.77515 0.80615 0.93294 0.89543 0.88719 0.94011 0.92774 0.91780 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 7.71 71.24 0.55 -4.34 16 2 C 0.06 1.89 5.88 -19.87 -0.12 1.77 16 3 C -0.08 -2.07 6.83 36.37 0.25 -1.82 16 4 N 0.03 0.94 4.45 -46.46 -0.21 0.73 16 5 O -0.15 -3.90 18.47 18.89 0.35 -3.55 16 6 O -0.19 -5.52 15.36 18.88 0.29 -5.23 16 7 C 0.00 0.04 9.56 22.27 0.21 0.25 16 8 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 9 C 0.02 0.48 9.30 22.27 0.21 0.68 16 10 C -0.69 -19.84 5.83 22.27 0.13 -19.71 16 11 S 2.69 99.38 4.20 -56.49 -0.24 99.15 16 12 O -0.98 -38.28 17.10 -128.00 -2.19 -40.47 16 13 O -0.98 -43.93 15.01 -128.00 -1.92 -45.85 16 14 N -0.98 -35.70 2.28 -520.46 -1.19 -36.88 16 15 C 0.09 2.52 8.43 127.77 1.08 3.59 16 16 C 0.27 11.89 2.67 44.25 0.12 12.01 16 17 H 0.03 1.52 6.73 -2.39 -0.02 1.50 16 18 C -0.14 -5.42 8.86 71.98 0.64 -4.78 16 19 C -0.53 -26.82 8.31 25.60 0.21 -26.61 16 20 H 0.06 3.10 7.37 -2.91 -0.02 3.08 16 21 C 0.02 1.06 5.30 84.65 0.45 1.50 16 22 N -0.91 -48.91 11.38 21.45 0.24 -48.67 16 23 Si 0.95 41.16 29.54 68.60 2.03 43.19 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 27 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.12 3.34 5.86 -2.39 -0.01 3.33 16 29 H 0.06 1.80 5.98 -2.39 -0.01 1.79 16 30 H 0.19 1.88 7.62 -2.91 -0.02 1.86 16 31 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.18 2.88 6.08 -2.91 -0.02 2.86 16 33 H 0.05 1.47 8.02 -2.39 -0.02 1.45 16 34 H 0.09 1.79 7.75 -2.39 -0.02 1.77 16 35 H 0.09 2.38 6.80 -2.39 -0.02 2.36 16 36 H 0.04 1.30 7.59 -2.39 -0.02 1.29 16 37 H 0.05 1.90 7.05 -2.39 -0.02 1.88 16 38 H 0.06 2.93 6.23 -2.38 -0.01 2.91 16 39 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -69.03 335.44 2.21 -66.82 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.10 Total: 9.59 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.95 Total: -38.82 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.15 Total: -84.82 kcal Atomic # 8 Polarization: -91.63 SS G_CDS: -3.47 Total: -95.10 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 99.38 SS G_CDS: -0.24 Total: 99.15 kcal Total: -69.03 2.21 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds