Wall clock time and date at job start Tue Mar 31 2020 15:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38262 * 119.99872 * 2 1 4 4 C 1.38208 * 119.99908 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00010 * 359.97438 * 4 3 2 6 6 N 1.48022 * 119.99822 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.00043 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.38212 * 120.00081 * 359.74882 * 5 4 3 10 10 C 1.38210 * 120.00023 * 179.97438 * 2 1 3 11 11 S 1.76196 * 120.00173 * 359.97438 * 10 2 1 12 12 O 1.42104 * 106.40628 * 179.91329 * 11 10 2 13 13 O 1.42103 * 106.40219 * 46.98987 * 11 10 2 14 14 N 1.65601 * 107.21829 * 293.45289 * 11 10 2 15 15 C 1.46498 * 119.99824 * 277.53452 * 14 11 10 16 16 C 1.46497 * 120.00098 * 97.54175 * 14 11 10 17 17 H 1.08997 * 109.47000 * 354.03016 * 16 14 11 18 18 C 1.53003 * 109.47513 * 114.03489 * 16 14 11 19 19 C 1.50701 * 109.46993 * 234.03443 * 16 14 11 20 20 H 1.08000 * 119.99622 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99957 * 179.97438 * 19 16 14 22 22 N 1.31514 * 120.00342 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00071 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46930 * 59.99647 * 23 21 19 25 25 H 1.48498 * 109.47187 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46831 * 300.00351 * 23 21 19 27 27 H 1.09000 * 109.46946 * 264.26244 * 1 2 3 28 28 H 1.09000 * 109.47574 * 24.26448 * 1 2 3 29 29 H 1.09000 * 109.47383 * 144.26606 * 1 2 3 30 30 H 1.07999 * 119.99715 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.00197 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.00097 * 180.26837 * 9 5 4 33 33 H 1.08997 * 109.47563 * 270.00025 * 15 14 11 34 34 H 1.08998 * 109.47417 * 30.00693 * 15 14 11 35 35 H 1.09002 * 109.47125 * 149.99941 * 15 14 11 36 36 H 1.08998 * 109.46919 * 59.99480 * 18 16 14 37 37 H 1.09003 * 109.46605 * 299.99747 * 18 16 14 38 38 H 1.08996 * 109.46886 * 179.97438 * 18 16 14 39 39 H 0.97000 * 120.00432 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0000 0.0016 6 7 5.7518 0.0001 0.0028 7 8 6.3608 1.0549 0.0023 8 8 6.3608 -1.0547 0.0032 9 6 3.5806 -1.1969 0.0074 10 6 2.1980 -1.1969 0.0005 11 16 1.3171 -2.7229 0.0019 12 8 2.2970 -3.7520 0.0001 13 8 0.3108 -2.6061 -0.9946 14 7 0.5273 -2.8317 1.4534 15 6 1.2400 -3.3089 2.6410 16 6 -0.8840 -2.4509 1.5498 17 1 -1.2110 -2.0251 0.6012 18 6 -1.7253 -3.6878 1.8708 19 6 -1.0549 -1.4292 2.6444 20 1 -0.1979 -1.0966 3.2112 21 6 -2.3052 -0.9184 2.9214 22 7 -3.3488 -1.3231 2.2309 23 14 -2.5173 0.3474 4.2787 24 1 -1.7001 1.5478 3.9681 25 1 -3.9479 0.7336 4.3763 26 1 -2.0725 -0.2333 5.5711 27 1 -0.3633 -0.1027 1.0225 28 1 -0.3634 0.9368 -0.4223 29 1 -0.3634 -0.8342 -0.6002 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 0.0010 32 1 4.1206 -2.1322 0.0126 33 1 1.1412 -4.3920 2.7134 34 1 2.2946 -3.0447 2.5626 35 1 0.8146 -2.8450 3.5309 36 1 -1.3982 -4.1135 2.8194 37 1 -1.6016 -4.4267 1.0790 38 1 -2.7753 -3.4043 1.9429 39 1 -4.2284 -0.9635 2.4256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:05 Heat of formation + Delta-G solvation = -43.550604 kcal Electronic energy + Delta-G solvation = -27206.013808 eV Core-core repulsion = 23244.642781 eV Total energy + Delta-G solvation = -3961.371027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.21823 -39.66549 -37.19401 -36.60555 -36.47496 -35.58503 -33.40470 -32.88586 -31.77086 -29.38920 -28.53229 -25.69680 -25.57667 -24.96408 -23.76471 -21.96266 -21.04073 -19.92243 -18.75400 -18.22359 -17.58710 -17.22293 -16.69378 -16.39870 -16.07206 -15.80792 -15.26579 -14.73258 -14.39620 -14.02311 -13.72250 -13.38591 -13.00486 -12.69186 -12.60946 -12.35371 -12.11998 -12.10083 -11.91439 -11.65809 -11.60924 -11.47825 -11.34050 -11.24999 -11.18797 -11.13124 -11.04380 -10.72825 -10.58033 -10.35155 -10.27430 -9.90649 -9.45163 -9.31739 -8.71548 -8.23378 -6.35492 -4.44753 -0.22258 0.39674 0.70739 1.26062 1.34631 2.89295 3.07855 3.15917 3.17463 3.36682 3.93310 4.12489 4.18400 4.34850 4.53561 4.58153 4.75107 4.93724 5.03189 5.25160 5.39302 5.42481 5.47013 5.60385 5.96037 6.00073 6.08886 6.15254 6.20321 6.37193 6.48557 6.65075 6.70442 6.78407 6.90405 7.19622 7.37882 7.54199 7.60341 7.81034 7.99987 8.58035 9.20813 10.68154 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.004951 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.135892 B = 5654.565207 C = 6570.782856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.097 3.903 3 C -0.147 4.147 4 C -0.007 4.007 5 C -0.087 4.087 6 N 0.035 4.965 7 O -0.168 6.168 8 O -0.162 6.162 9 C 0.048 3.952 10 C -0.689 4.689 11 S 2.686 3.314 12 O -0.966 6.966 13 O -0.948 6.948 14 N -0.975 5.975 15 C 0.101 3.899 16 C 0.257 3.743 17 H 0.071 0.929 18 C -0.147 4.147 19 C -0.535 4.535 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.875 5.875 23 Si 0.894 3.106 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.150 0.850 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.014 0.986 38 H 0.095 0.905 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 3.422 -2.214 8.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.096 3.904 3 C -0.166 4.166 4 C -0.026 4.026 5 C -0.171 4.171 6 N 0.553 4.447 7 O -0.383 6.383 8 O -0.378 6.378 9 C 0.027 3.973 10 C -0.772 4.772 11 S 2.773 3.227 12 O -0.956 6.956 13 O -0.938 6.938 14 N -0.816 5.816 15 C -0.045 4.045 16 C 0.155 3.845 17 H 0.088 0.912 18 C -0.207 4.207 19 C -0.573 4.573 20 H 0.084 0.916 21 C -0.134 4.134 22 N -0.512 5.512 23 Si 0.721 3.279 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.167 0.833 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.113 0.887 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.102 2.881 -2.911 7.349 hybrid contribution 0.629 1.546 1.121 2.010 sum 6.731 4.427 -1.790 8.253 Atomic orbital electron populations 1.22509 0.87502 1.06606 1.09843 1.20303 0.98167 0.91027 0.80923 1.21314 0.92379 0.99300 1.03636 1.21235 0.94860 0.96956 0.89578 1.21065 0.79274 0.97158 1.19576 1.43535 1.03487 1.00414 0.97222 1.94508 1.69054 1.20778 1.53914 1.94555 1.69021 1.20620 1.53588 1.20768 0.92642 0.98083 0.85769 1.31536 1.04130 1.22853 1.18673 1.02355 0.73008 0.73250 0.74044 1.93540 1.62076 1.53006 1.86958 1.93526 1.56957 1.86200 1.57092 1.57434 1.21551 1.78593 1.24024 1.21328 0.94308 0.99187 0.89710 1.19095 0.72747 0.93453 0.99220 0.91166 1.22100 1.04106 0.96541 0.97981 1.21278 0.93943 1.23370 1.18750 0.91579 1.24919 0.95716 0.96612 0.96136 1.69856 0.99604 1.42191 1.39522 0.86631 0.77412 0.81489 0.82387 1.20145 1.21018 1.20067 0.83255 0.89975 0.86411 0.82811 0.82664 0.81498 0.92992 0.93238 0.89480 0.94643 0.96680 0.88660 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.31 8.09 36.00 0.29 -3.02 16 2 C 0.10 1.43 5.87 -104.63 -0.61 0.82 16 3 C -0.15 -1.77 9.68 -39.58 -0.38 -2.16 16 4 C -0.01 -0.09 9.56 -39.58 -0.38 -0.46 16 5 C -0.09 -1.25 6.85 -79.95 -0.55 -1.79 16 6 N 0.04 0.54 4.45 33.96 0.15 0.70 16 7 O -0.17 -2.55 18.45 -29.46 -0.54 -3.10 16 8 O -0.16 -2.62 18.45 -29.46 -0.54 -3.17 16 9 C 0.05 0.71 9.06 -39.58 -0.36 0.36 16 10 C -0.69 -10.85 5.91 -39.58 -0.23 -11.08 16 11 S 2.69 47.75 5.03 -107.50 -0.54 47.21 16 12 O -0.97 -18.12 16.31 -57.17 -0.93 -19.05 16 13 O -0.95 -18.71 13.99 -57.17 -0.80 -19.51 16 14 N -0.97 -17.72 3.05 -115.86 -0.35 -18.07 16 15 C 0.10 1.59 9.52 59.85 0.57 2.16 16 16 C 0.26 5.35 1.62 -69.08 -0.11 5.24 16 17 H 0.07 1.55 4.88 -51.93 -0.25 1.30 16 18 C -0.15 -3.12 9.06 37.16 0.34 -2.78 16 19 C -0.53 -11.57 5.58 -34.44 -0.19 -11.76 16 20 H 0.07 1.40 6.92 -52.49 -0.36 1.03 16 21 C 0.07 1.61 5.30 -17.82 -0.09 1.52 16 22 N -0.88 -20.95 11.32 55.43 0.63 -20.32 16 23 Si 0.89 18.05 29.54 -169.99 -5.02 13.03 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H 0.15 2.67 4.72 -51.93 -0.24 2.42 16 28 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.12 2.07 4.01 -51.93 -0.21 1.86 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.16 1.48 7.61 -52.48 -0.40 1.08 16 32 H 0.17 2.42 6.89 -52.49 -0.36 2.05 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 35 H 0.09 1.39 6.58 -51.93 -0.34 1.05 16 36 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 39 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -26.30 332.18 -8.80 -35.10 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.13 Total: 5.15 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -1.72 Total: -22.96 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.43 Total: -37.70 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.82 Total: -44.83 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -0.54 Total: 47.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.30 -8.80 -35.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.452 kcal (2) G-P(sol) polarization free energy of solvation -26.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds