Wall clock time and date at job start Tue Mar 31 2020 15:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38262 * 119.99872 * 2 1 4 4 C 1.38208 * 119.99908 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00010 * 359.97438 * 4 3 2 6 6 N 1.48022 * 119.99822 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.00043 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.38212 * 120.00081 * 359.74882 * 5 4 3 10 10 C 1.38210 * 120.00023 * 179.97438 * 2 1 3 11 11 S 1.76196 * 120.00173 * 359.97438 * 10 2 1 12 12 O 1.42104 * 106.40628 * 179.91329 * 11 10 2 13 13 O 1.42103 * 106.40219 * 46.98987 * 11 10 2 14 14 N 1.65601 * 107.21829 * 293.45289 * 11 10 2 15 15 C 1.46498 * 119.99824 * 277.53452 * 14 11 10 16 16 C 1.46497 * 120.00098 * 97.54175 * 14 11 10 17 17 H 1.08997 * 109.47000 * 354.03016 * 16 14 11 18 18 C 1.53003 * 109.47513 * 114.03489 * 16 14 11 19 19 C 1.50701 * 109.46993 * 234.03443 * 16 14 11 20 20 H 1.08000 * 119.99622 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99957 * 179.97438 * 19 16 14 22 22 N 1.31514 * 120.00342 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00071 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46930 * 59.99647 * 23 21 19 25 25 H 1.48498 * 109.47187 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46831 * 300.00351 * 23 21 19 27 27 H 1.09000 * 109.46946 * 264.26244 * 1 2 3 28 28 H 1.09000 * 109.47574 * 24.26448 * 1 2 3 29 29 H 1.09000 * 109.47383 * 144.26606 * 1 2 3 30 30 H 1.07999 * 119.99715 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.00197 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.00097 * 180.26837 * 9 5 4 33 33 H 1.08997 * 109.47563 * 270.00025 * 15 14 11 34 34 H 1.08998 * 109.47417 * 30.00693 * 15 14 11 35 35 H 1.09002 * 109.47125 * 149.99941 * 15 14 11 36 36 H 1.08998 * 109.46919 * 59.99480 * 18 16 14 37 37 H 1.09003 * 109.46605 * 299.99747 * 18 16 14 38 38 H 1.08996 * 109.46886 * 179.97438 * 18 16 14 39 39 H 0.97000 * 120.00432 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0000 0.0016 6 7 5.7518 0.0001 0.0028 7 8 6.3608 1.0549 0.0023 8 8 6.3608 -1.0547 0.0032 9 6 3.5806 -1.1969 0.0074 10 6 2.1980 -1.1969 0.0005 11 16 1.3171 -2.7229 0.0019 12 8 2.2970 -3.7520 0.0001 13 8 0.3108 -2.6061 -0.9946 14 7 0.5273 -2.8317 1.4534 15 6 1.2400 -3.3089 2.6410 16 6 -0.8840 -2.4509 1.5498 17 1 -1.2110 -2.0251 0.6012 18 6 -1.7253 -3.6878 1.8708 19 6 -1.0549 -1.4292 2.6444 20 1 -0.1979 -1.0966 3.2112 21 6 -2.3052 -0.9184 2.9214 22 7 -3.3488 -1.3231 2.2309 23 14 -2.5173 0.3474 4.2787 24 1 -1.7001 1.5478 3.9681 25 1 -3.9479 0.7336 4.3763 26 1 -2.0725 -0.2333 5.5711 27 1 -0.3633 -0.1027 1.0225 28 1 -0.3634 0.9368 -0.4223 29 1 -0.3634 -0.8342 -0.6002 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 0.0010 32 1 4.1206 -2.1322 0.0126 33 1 1.1412 -4.3920 2.7134 34 1 2.2946 -3.0447 2.5626 35 1 0.8146 -2.8450 3.5309 36 1 -1.3982 -4.1135 2.8194 37 1 -1.6016 -4.4267 1.0790 38 1 -2.7753 -3.4043 1.9429 39 1 -4.2284 -0.9635 2.4256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:04 Heat of formation + Delta-G solvation = -58.045923 kcal Electronic energy + Delta-G solvation = -27206.642372 eV Core-core repulsion = 23244.642781 eV Total energy + Delta-G solvation = -3961.999591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.38870 -40.78030 -38.66689 -37.99421 -37.79349 -37.06452 -34.56463 -34.52585 -32.86213 -30.98626 -29.73515 -27.26220 -27.07877 -26.19581 -24.87269 -23.10855 -22.63681 -21.12980 -19.92947 -19.62191 -18.77120 -18.66962 -18.29589 -17.69855 -17.38264 -16.95273 -16.70829 -16.20570 -15.38542 -15.30553 -15.19334 -14.76075 -14.56600 -13.94938 -13.82473 -13.76054 -13.51996 -13.39755 -13.25696 -13.17430 -12.92406 -12.84383 -12.79096 -12.68786 -12.62980 -12.42284 -12.39475 -12.24280 -12.08953 -11.95511 -11.74758 -11.14274 -10.93705 -10.52211 -10.39201 -9.72817 -8.07405 -6.19968 -1.36981 -0.81981 -0.58604 0.11708 0.19899 1.48678 1.53785 1.57571 1.74777 2.04188 2.47050 2.56573 3.05492 3.21559 3.24468 3.40399 3.44643 3.64454 3.84003 4.05724 4.21011 4.33209 4.44565 4.53718 4.68861 4.78827 4.87189 4.94064 5.00313 5.01943 5.02916 5.17000 5.24250 5.25651 5.49294 5.62869 5.69804 5.85121 6.10008 6.30432 6.39608 6.87322 7.47636 8.96160 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.004951 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.135892 B = 5654.565207 C = 6570.782856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.087 3.913 3 C -0.131 4.131 4 C 0.008 3.992 5 C -0.092 4.092 6 N 0.035 4.965 7 O -0.147 6.147 8 O -0.198 6.198 9 C 0.040 3.960 10 C -0.693 4.693 11 S 2.695 3.305 12 O -0.981 6.981 13 O -0.974 6.974 14 N -0.980 5.980 15 C 0.093 3.907 16 C 0.262 3.738 17 H 0.055 0.945 18 C -0.146 4.146 19 C -0.525 4.525 20 H 0.072 0.928 21 C 0.033 3.967 22 N -0.905 5.905 23 Si 0.944 3.056 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.278 1.278 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.194 0.806 31 H 0.191 0.809 32 H 0.165 0.835 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 5.858 -1.783 10.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.086 3.914 3 C -0.150 4.150 4 C -0.011 4.011 5 C -0.177 4.177 6 N 0.552 4.448 7 O -0.368 6.368 8 O -0.405 6.405 9 C 0.019 3.981 10 C -0.780 4.780 11 S 2.786 3.214 12 O -0.971 6.971 13 O -0.964 6.964 14 N -0.820 5.820 15 C -0.052 4.052 16 C 0.158 3.842 17 H 0.073 0.927 18 C -0.206 4.206 19 C -0.565 4.565 20 H 0.090 0.910 21 C -0.168 4.168 22 N -0.543 5.543 23 Si 0.771 3.229 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.204 1.204 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.211 0.789 31 H 0.208 0.792 32 H 0.182 0.818 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.430 5.197 -2.470 9.397 hybrid contribution 0.309 0.881 0.940 1.324 sum 7.738 6.077 -1.531 9.958 Atomic orbital electron populations 1.22371 0.88437 1.07228 1.08338 1.20363 0.97659 0.91796 0.81631 1.21704 0.92355 0.99574 1.01373 1.21671 0.94885 0.97284 0.87228 1.21219 0.78643 0.97828 1.19969 1.43675 1.03913 1.00263 0.96988 1.94482 1.69351 1.20573 1.52411 1.94575 1.69457 1.20879 1.55571 1.20738 0.92343 0.98716 0.86268 1.31037 1.04213 1.22036 1.20687 1.01758 0.72569 0.73630 0.73452 1.93514 1.62190 1.54405 1.87036 1.93498 1.58034 1.86830 1.58022 1.57305 1.20859 1.79090 1.24783 1.21512 0.95244 0.99687 0.88784 1.18851 0.74013 0.92964 0.98340 0.92712 1.22040 1.03087 0.97008 0.98420 1.21415 0.93852 1.22831 1.18357 0.91038 1.25469 0.95655 0.98065 0.97653 1.69972 0.99801 1.43542 1.41034 0.85827 0.76785 0.80109 0.80180 1.19070 1.21905 1.20369 0.85231 0.87212 0.88683 0.78880 0.79218 0.81766 0.92280 0.91214 0.89568 0.94061 0.96332 0.90695 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.31 8.09 71.23 0.58 -5.74 16 2 C 0.09 2.37 5.87 -19.87 -0.12 2.25 16 3 C -0.13 -2.58 9.68 22.27 0.22 -2.36 16 4 C 0.01 0.16 9.56 22.27 0.21 0.37 16 5 C -0.09 -2.40 6.85 36.37 0.25 -2.16 16 6 N 0.04 1.00 4.45 -46.46 -0.21 0.79 16 7 O -0.15 -3.98 18.45 18.89 0.35 -3.64 16 8 O -0.20 -6.24 18.45 18.88 0.35 -5.89 16 9 C 0.04 1.14 9.06 22.27 0.20 1.34 16 10 C -0.69 -21.03 5.91 22.27 0.13 -20.90 16 11 S 2.69 96.23 5.03 -56.49 -0.28 95.95 16 12 O -0.98 -37.02 16.31 -128.00 -2.09 -39.10 16 13 O -0.97 -39.35 13.99 -128.00 -1.79 -41.14 16 14 N -0.98 -35.54 3.05 -520.46 -1.59 -37.12 16 15 C 0.09 2.87 9.52 127.77 1.22 4.09 16 16 C 0.26 10.99 1.62 44.25 0.07 11.06 16 17 H 0.06 2.50 4.88 -2.39 -0.01 2.48 16 18 C -0.15 -6.28 9.06 71.98 0.65 -5.63 16 19 C -0.53 -22.53 5.58 25.60 0.14 -22.38 16 20 H 0.07 2.94 6.92 -2.91 -0.02 2.92 16 21 C 0.03 1.50 5.30 84.65 0.45 1.95 16 22 N -0.91 -43.96 11.32 21.45 0.24 -43.72 16 23 Si 0.94 36.39 29.54 68.60 2.03 38.42 16 24 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 27 H 0.13 4.51 4.72 -2.39 -0.01 4.50 16 28 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 29 H 0.09 3.36 4.01 -2.39 -0.01 3.36 16 30 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.19 2.46 7.61 -2.91 -0.02 2.44 16 32 H 0.16 4.72 6.89 -2.91 -0.02 4.70 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.84 7.98 -2.39 -0.02 1.82 16 35 H 0.09 2.67 6.58 -2.39 -0.02 2.65 16 36 H 0.04 1.66 7.82 -2.39 -0.02 1.64 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 39 H 0.26 12.50 8.31 -92.71 -0.77 11.73 16 Total: -1.00 -56.63 332.18 2.12 -54.52 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.11 Total: 19.05 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.00 Total: -38.11 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.55 Total: -80.05 kcal Atomic # 8 Polarization: -86.59 SS G_CDS: -3.18 Total: -89.77 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 16 Polarization: 96.23 SS G_CDS: -0.28 Total: 95.95 kcal Total: -56.63 2.12 -54.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.531 kcal (2) G-P(sol) polarization free energy of solvation -56.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds