Wall clock time and date at job start Tue Mar 31 2020 15:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 120.00443 * 2 1 4 4 C 1.38211 * 120.00286 * 180.25731 * 3 2 1 5 5 C 1.38257 * 119.99886 * 359.49444 * 4 3 2 6 6 N 1.48020 * 120.00122 * 180.27365 * 5 4 3 7 7 O 1.21796 * 119.99777 * 0.02562 * 6 5 4 8 8 O 1.21795 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.38210 * 120.00048 * 0.25359 * 5 4 3 10 10 C 1.38217 * 119.99869 * 179.77317 * 2 1 3 11 11 S 1.76198 * 119.99801 * 359.97438 * 10 2 1 12 12 O 1.42094 * 106.40554 * 48.70506 * 11 10 2 13 13 O 1.42108 * 106.40023 * 181.62062 * 11 10 2 14 14 N 1.65599 * 107.22049 * 295.15997 * 11 10 2 15 15 C 1.46507 * 119.99759 * 98.52367 * 14 11 10 16 16 C 1.46495 * 120.00086 * 278.52690 * 14 11 10 17 17 H 1.09001 * 109.47420 * 0.02562 * 16 14 11 18 18 C 1.52997 * 109.47085 * 239.99551 * 16 14 11 19 19 C 1.50709 * 109.47058 * 119.99950 * 16 14 11 20 20 H 1.08000 * 119.99618 * 359.97438 * 19 16 14 21 21 C 1.37875 * 119.99824 * 180.02562 * 19 16 14 22 22 N 1.31510 * 120.00343 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99696 * 179.97438 * 21 19 16 24 24 H 1.48508 * 109.47084 * 89.99833 * 23 21 19 25 25 H 1.48499 * 109.47043 * 209.99467 * 23 21 19 26 26 H 1.48501 * 109.47451 * 329.99912 * 23 21 19 27 27 H 1.09007 * 109.47037 * 264.32562 * 1 2 3 28 28 H 1.09000 * 109.47362 * 24.32098 * 1 2 3 29 29 H 1.08999 * 109.47699 * 144.32702 * 1 2 3 30 30 H 1.08004 * 119.99567 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.00089 * 179.76381 * 4 3 2 32 32 H 1.07996 * 120.00398 * 180.02562 * 9 5 4 33 33 H 1.08999 * 109.46714 * 95.21944 * 15 14 11 34 34 H 1.08999 * 109.46843 * 215.22398 * 15 14 11 35 35 H 1.08996 * 109.46823 * 335.22254 * 15 14 11 36 36 H 1.08999 * 109.46868 * 60.00101 * 18 16 14 37 37 H 1.09002 * 109.47091 * 180.02562 * 18 16 14 38 38 H 1.09002 * 109.47177 * 299.99869 * 18 16 14 39 39 H 0.96999 * 120.00539 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0002 6 7 5.7519 -0.0002 0.0002 7 8 6.3609 1.0546 -0.0036 8 8 6.3608 -1.0549 0.0052 9 6 3.5806 -1.1970 0.0051 10 6 2.1980 -1.1970 0.0047 11 16 1.3169 -2.7229 0.0115 12 8 0.3368 -2.6249 -1.0127 13 8 2.2964 -3.7516 0.0539 14 7 0.4900 -2.8052 1.4438 15 6 -0.9289 -2.4435 1.4923 16 6 1.1772 -3.2395 2.6625 17 1 2.2187 -3.4638 2.4321 18 6 0.4948 -4.4931 3.2135 19 6 1.1164 -2.1408 3.6922 20 1 0.6163 -1.2118 3.4617 21 6 1.7002 -2.3213 4.9282 22 7 2.3097 -3.4524 5.2087 23 14 1.6255 -0.9592 6.2043 24 1 0.4043 -1.1238 7.0331 25 1 2.8272 -1.0293 7.0740 26 1 1.5856 0.3583 5.5203 27 1 -0.3633 -0.1016 1.0227 28 1 -0.3634 0.9364 -0.4232 29 1 -0.3634 -0.8348 -0.5993 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 -0.0092 32 1 4.1205 -2.1323 0.0095 33 1 -1.5367 -3.3429 1.3933 34 1 -1.1482 -1.9596 2.4440 35 1 -1.1574 -1.7589 0.6755 36 1 0.5387 -5.2878 2.4687 37 1 1.0058 -4.8161 4.1205 38 1 -0.5466 -4.2684 3.4441 39 1 2.7201 -3.5796 6.0783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:10 Heat of formation + Delta-G solvation = -40.905023 kcal Electronic energy + Delta-G solvation = -27266.952610 eV Core-core repulsion = 23305.696304 eV Total energy + Delta-G solvation = -3961.256306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.13572 -39.69134 -37.17474 -36.51016 -36.47091 -35.60894 -33.61777 -32.75432 -31.75941 -29.43918 -28.60619 -25.92939 -25.35468 -24.96712 -23.82085 -22.02971 -20.94829 -19.91042 -18.66688 -18.22540 -17.49510 -17.23433 -16.74309 -16.31925 -16.07983 -15.93212 -15.34974 -14.64530 -14.45420 -14.30740 -13.67915 -13.45514 -13.03753 -12.91831 -12.77973 -12.39062 -12.27300 -12.19887 -11.91608 -11.57714 -11.54130 -11.49389 -11.36288 -11.20475 -11.07856 -11.06526 -10.96857 -10.71663 -10.58559 -10.37293 -10.24601 -9.86968 -9.48668 -9.41719 -8.63008 -8.19766 -6.23759 -4.33894 -0.20060 0.43270 0.71135 1.27869 1.42063 2.88944 3.13861 3.21016 3.23075 3.34495 3.92351 4.13164 4.22514 4.33242 4.39316 4.54283 4.72298 4.97185 5.07162 5.20226 5.24329 5.33198 5.43136 5.45415 5.53497 5.74365 5.87299 5.98502 6.06755 6.17296 6.43853 6.45216 6.70490 6.75713 6.94761 7.21997 7.43980 7.61422 7.69455 7.88518 8.08127 8.67937 9.33571 10.81147 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010007 B = 0.006286 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.235263 B = 4452.988906 C = 5578.014202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 C -0.143 4.143 4 C -0.007 4.007 5 C -0.075 4.075 6 N 0.033 4.967 7 O -0.168 6.168 8 O -0.154 6.154 9 C 0.054 3.946 10 C -0.672 4.672 11 S 2.687 3.313 12 O -0.966 6.966 13 O -0.950 6.950 14 N -0.973 5.973 15 C 0.085 3.915 16 C 0.268 3.732 17 H 0.056 0.944 18 C -0.144 4.144 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.068 3.932 22 N -0.882 5.882 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.171 0.829 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.016 0.984 37 H 0.094 0.906 38 H 0.034 0.966 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 8.000 -9.178 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.075 3.925 3 C -0.162 4.162 4 C -0.026 4.026 5 C -0.158 4.158 6 N 0.553 4.447 7 O -0.382 6.382 8 O -0.371 6.371 9 C 0.034 3.966 10 C -0.754 4.754 11 S 2.774 3.226 12 O -0.956 6.956 13 O -0.940 6.940 14 N -0.814 5.814 15 C -0.061 4.061 16 C 0.166 3.834 17 H 0.074 0.926 18 C -0.203 4.203 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.136 4.136 22 N -0.519 5.519 23 Si 0.722 3.278 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.188 0.812 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.218 7.338 -9.692 13.229 hybrid contribution 0.808 1.571 1.250 2.164 sum -4.410 8.909 -8.442 13.042 Atomic orbital electron populations 1.22125 0.89360 1.07041 1.05846 1.19959 0.97044 0.91518 0.83932 1.21194 0.92558 0.98865 1.03588 1.21221 0.94840 0.97053 0.89524 1.21105 0.79588 0.97100 1.18053 1.43500 1.03386 1.00490 0.97361 1.94499 1.68975 1.20797 1.53894 1.94577 1.68874 1.20532 1.53131 1.20784 0.92662 0.98359 0.84786 1.31470 1.04500 1.22456 1.17020 1.02328 0.73419 0.73490 0.73378 1.93481 1.59149 1.86746 1.56226 1.93585 1.61413 1.52438 1.86538 1.57418 1.18154 1.79918 1.25930 1.21690 0.80640 1.00422 1.03305 1.18809 0.91762 0.93249 0.79610 0.92607 1.22043 0.99932 0.96497 1.01876 1.21314 1.37036 1.00754 0.98221 0.91908 1.24903 0.94791 0.95730 0.98186 1.69855 1.35383 1.23889 1.22788 0.86566 0.77822 0.81977 0.81455 1.20405 1.21020 1.20055 0.87347 0.89211 0.86504 0.82944 0.82543 0.81182 0.93046 0.89940 0.91381 0.96490 0.88724 0.94637 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 7.88 36.00 0.28 -1.75 16 2 C 0.08 1.03 5.87 -104.63 -0.61 0.41 16 3 C -0.14 -1.61 9.68 -39.58 -0.38 -1.99 16 4 C -0.01 -0.09 9.56 -39.58 -0.38 -0.47 16 5 C -0.07 -1.17 6.85 -79.95 -0.55 -1.72 16 6 N 0.03 0.57 4.45 33.96 0.15 0.72 16 7 O -0.17 -2.75 18.45 -29.46 -0.54 -3.30 16 8 O -0.15 -2.79 18.45 -29.46 -0.54 -3.33 16 9 C 0.05 0.91 9.06 -39.58 -0.36 0.55 16 10 C -0.67 -10.84 5.91 -39.58 -0.23 -11.08 16 11 S 2.69 47.81 5.03 -107.50 -0.54 47.27 16 12 O -0.97 -16.69 14.38 -57.17 -0.82 -17.51 16 13 O -0.95 -19.76 15.83 -57.17 -0.91 -20.66 16 14 N -0.97 -17.88 3.01 -115.85 -0.35 -18.22 16 15 C 0.09 1.26 8.14 59.85 0.49 1.75 16 16 C 0.27 6.03 2.59 -69.08 -0.18 5.85 16 17 H 0.06 1.40 7.16 -51.93 -0.37 1.03 16 18 C -0.14 -3.18 8.97 37.16 0.33 -2.84 16 19 C -0.53 -12.75 8.03 -34.44 -0.28 -13.03 16 20 H 0.06 1.43 7.25 -52.49 -0.38 1.05 16 21 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -23.32 11.32 55.43 0.63 -22.69 16 23 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.11 1.15 6.56 -51.92 -0.34 0.81 16 28 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 29 H 0.12 1.38 4.02 -51.93 -0.21 1.17 16 30 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.16 1.54 7.61 -52.48 -0.40 1.14 16 32 H 0.17 2.88 6.89 -52.49 -0.36 2.52 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.23 6.96 -51.93 -0.36 0.87 16 35 H 0.07 0.82 4.10 -51.93 -0.21 0.61 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 38 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -29.79 334.61 -9.04 -38.83 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.17 Total: 1.90 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.96 Total: -22.71 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.43 Total: -40.20 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.81 Total: -44.80 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 47.81 SS G_CDS: -0.54 Total: 47.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.79 -9.04 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.074 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds